RNA–Protein interactions for RNA: ENST00000553683.1

VRK1-202, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 247 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-202ENST00000553683 DUSP15Q9H1R2 295 aaPredicted RBP5.54□□□□□ -1.52
VRK1-202ENST00000553683 GPATCH2Q9NW75 528 aa5.54□□□□□ -1.52
VRK1-202ENST00000553683 BIN1O00499 593 aa5.53□□□□□ -1.52
VRK1-202ENST00000553683 UBOX5O94941 541 aa5.53□□□□□ -1.52
VRK1-202ENST00000553683 TCF3P15923 654 aa5.53□□□□□ -1.52
VRK1-202ENST00000553683 ITGB5P18084 799 aa5.53□□□□□ -1.52
VRK1-202ENST00000553683 IKZF1Q13422 519 aa5.53□□□□□ -1.52
VRK1-202ENST00000553683 GAB4Q2WGN9 574 aa5.53□□□□□ -1.52
VRK1-202ENST00000553683 ZNF574Q6ZN55 896 aaPredicted RBP5.53□□□□□ -1.52
VRK1-202ENST00000553683 ATG4DQ86TL0 474 aaPredicted RBP5.53□□□□□ -1.52
VRK1-202ENST00000553683 PRR13Q9NZ81 148 aa5.53□□□□□ -1.52
VRK1-202ENST00000553683 STRIP2Q9ULQ0 834 aa5.53□□□□□ -1.52
VRK1-202ENST00000553683 ZP2Q05996 745 aa5.52□□□□□ -1.53
VRK1-202ENST00000553683 ZNF792Q3KQV3 632 aa5.52□□□□□ -1.53
VRK1-202ENST00000553683 NBPF12Q5TAG4 269 aaPredicted RBP5.52□□□□□ -1.53
VRK1-202ENST00000553683 CDKAL1Q5VV42 579 aa5.52□□□□□ -1.53
VRK1-202ENST00000553683 TSPYL5Q86VY4 417 aaPredicted RBP5.52□□□□□ -1.53
VRK1-202ENST00000553683 C19orf47Q8N9M1 422 aaKnown RBP5.52□□□□□ -1.53
VRK1-202ENST00000553683 FERD3LQ96RJ6 166 aa5.52□□□□□ -1.53
VRK1-202ENST00000553683 SLC12A7Q9Y666 1083 aa5.52□□□□□ -1.53
VRK1-202ENST00000553683 H3BS24 57 aa5.51□□□□□ -1.53
VRK1-202ENST00000553683 CLEC3AO75596 197 aa5.51□□□□□ -1.53
VRK1-202ENST00000553683 FLAD1Q8NFF5 587 aa5.51□□□□□ -1.53
VRK1-202ENST00000553683 SMARCC1Q92922 1105 aaPredicted RBP5.51□□□□□ -1.53
VRK1-202ENST00000553683 UBE2FQ969M7 185 aa5.51□□□□□ -1.53
VRK1-202ENST00000553683 CCSER2Q9H7U1 834 aa5.51□□□□□ -1.53
VRK1-202ENST00000553683 ATP13A1Q9HD20 1204 aa5.51□□□□□ -1.53
VRK1-202ENST00000553683 MBNL3Q9NUK0 354 aaKnown RBP5.51□□□□□ -1.53
VRK1-202ENST00000553683 RNASE1P07998 156 aaKnown RBP5.5□□□□□ -1.53
VRK1-202ENST00000553683 TAL1P17542 331 aaPredicted RBP5.5□□□□□ -1.53
VRK1-202ENST00000553683 GUCY2CP25092 1073 aa5.5□□□□□ -1.53
VRK1-202ENST00000553683 NBPF9Q3BBW0 867 aa5.5□□□□□ -1.53
VRK1-202ENST00000553683 BBS9Q3SYG4 887 aa5.5□□□□□ -1.53
VRK1-202ENST00000553683 DAGLBQ8NCG7 672 aa5.5□□□□□ -1.53
VRK1-202ENST00000553683 SYTL5Q8TDW5 730 aaPredicted RBP5.5□□□□□ -1.53
VRK1-202ENST00000553683 CRBNQ96SW2 442 aa5.5□□□□□ -1.53
VRK1-202ENST00000553683 ASCC2Q9H1I8 757 aaPredicted RBP5.5□□□□□ -1.53
VRK1-202ENST00000553683 IGSF5Q9NSI5 407 aa5.5□□□□□ -1.53
VRK1-202ENST00000553683 GINM1Q9NU53 330 aa5.5□□□□□ -1.53
VRK1-202ENST00000553683 ZSWIM5Q9P217 1185 aa5.5□□□□□ -1.53
VRK1-202ENST00000553683 E9PSI1 815 aa5.49□□□□□ -1.53
VRK1-202ENST00000553683 ESR1P03372 595 aa5.49□□□□□ -1.53
VRK1-202ENST00000553683 ERCC5P28715 1186 aaPredicted RBP5.49□□□□□ -1.53
VRK1-202ENST00000553683 TPP2P29144 1249 aaPredicted RBP5.49□□□□□ -1.53
VRK1-202ENST00000553683 GDNFP39905 211 aa5.49□□□□□ -1.53
VRK1-202ENST00000553683 CD96P40200 585 aa5.49□□□□□ -1.53
VRK1-202ENST00000553683 GIPRP48546 466 aa5.49□□□□□ -1.53
VRK1-202ENST00000553683 GNL2Q13823 731 aaKnown RBP5.49□□□□□ -1.53
VRK1-202ENST00000553683 ANKRD39Q53RE8 183 aa5.49□□□□□ -1.53
VRK1-202ENST00000553683 C9orf131Q5VYM1 1079 aa5.49□□□□□ -1.53
VRK1-202ENST00000553683 VPS37DQ86XT2 251 aa5.49□□□□□ -1.53
VRK1-202ENST00000553683 ZNF655Q8N720 491 aaPredicted RBP5.49□□□□□ -1.53
VRK1-202ENST00000553683 ASIC4Q96FT7 647 aa5.49□□□□□ -1.53
VRK1-202ENST00000553683 SLC9A7Q96T83 725 aa5.49□□□□□ -1.53
VRK1-202ENST00000553683 SRRTQ9BXP5 876 aaKnown RBP5.49□□□□□ -1.53
VRK1-202ENST00000553683 ANTXR1Q9H6X2 564 aa5.49□□□□□ -1.53
VRK1-202ENST00000553683 CARS2Q9HA77 564 aaKnown RBP5.49□□□□□ -1.53
VRK1-202ENST00000553683 RC3H2Q9HBD1 1191 aaKnown RBP5.49□□□□□ -1.53
VRK1-202ENST00000553683 SUCOQ9UBS9 1254 aaKnown RBP5.49□□□□□ -1.53
VRK1-202ENST00000553683 EFR3BQ9Y2G0 817 aa5.49□□□□□ -1.53
VRK1-202ENST00000553683 INPP5FQ9Y2H2 1132 aa5.49□□□□□ -1.53
VRK1-202ENST00000553683 PAX4O43316 350 aa5.48□□□□□ -1.53
VRK1-202ENST00000553683 ENDOUP21128 410 aaKnown RBP5.48□□□□□ -1.53
VRK1-202ENST00000553683 PMS1P54277 932 aaKnown RBP5.48□□□□□ -1.53
VRK1-202ENST00000553683 EIF6P56537 245 aaKnown RBP5.48□□□□□ -1.53
VRK1-202ENST00000553683 TMEM192Q8IY95 271 aa5.48□□□□□ -1.53
VRK1-202ENST00000553683 ALPK1Q96QP1 1244 aa5.48□□□□□ -1.53
VRK1-202ENST00000553683 ADAMTS6Q9UKP5 1117 aa5.48□□□□□ -1.53
VRK1-202ENST00000553683 PPT2Q9UMR5 302 aa5.48□□□□□ -1.53
VRK1-202ENST00000553683 ACRP10323 421 aa5.47□□□□□ -1.53
VRK1-202ENST00000553683 POLR2BP30876 1174 aaKnown RBP5.47□□□□□ -1.53
VRK1-202ENST00000553683 AFMP43652 599 aa5.47□□□□□ -1.53
VRK1-202ENST00000553683 RBM25P49756 843 aaKnown RBP5.47□□□□□ -1.53
VRK1-202ENST00000553683 CASP7P55210 303 aa5.47□□□□□ -1.53
VRK1-202ENST00000553683 NMIQ13287 307 aaPredicted RBP5.47□□□□□ -1.53
VRK1-202ENST00000553683 CLEC16AQ2KHT3 1053 aa5.47□□□□□ -1.53
VRK1-202ENST00000553683 RNF111Q6ZNA4 994 aa5.47□□□□□ -1.53
VRK1-202ENST00000553683 LSRQ86X29 649 aaPredicted RBP5.47□□□□□ -1.53
VRK1-202ENST00000553683 LRRN4CLQ8ND94 238 aa5.47□□□□□ -1.53
VRK1-202ENST00000553683 SLC6A18Q96N87 628 aa5.47□□□□□ -1.53
VRK1-202ENST00000553683 FMNL2Q96PY5 1086 aa5.47□□□□□ -1.53
VRK1-202ENST00000553683 ACBD3Q9H3P7 528 aa5.47□□□□□ -1.53
VRK1-202ENST00000553683 DUSP13Q9UII6 198 aa5.47□□□□□ -1.53
VRK1-202ENST00000553683 CTNND2Q9UQB3 1225 aa5.47□□□□□ -1.53
VRK1-202ENST00000553683 ZNF281Q9Y2X9 895 aa5.47□□□□□ -1.53
VRK1-202ENST00000553683 SIGLEC6O43699 453 aa5.46□□□□□ -1.54
VRK1-202ENST00000553683 LRRN2O75325 713 aa5.46□□□□□ -1.54
VRK1-202ENST00000553683 ATF4P18848 351 aaPredicted RBP5.46□□□□□ -1.54
VRK1-202ENST00000553683 NASPP49321 788 aaPredicted RBP5.46□□□□□ -1.54
VRK1-202ENST00000553683 FBXW10Q5XX13 1052 aa5.46□□□□□ -1.54
VRK1-202ENST00000553683 CREG2Q8IUH2 290 aa5.46□□□□□ -1.54
VRK1-202ENST00000553683 SLC43A3Q8NBI5 491 aa5.46□□□□□ -1.54
VRK1-202ENST00000553683 DHX38Q92620 1227 aaKnown RBP5.46□□□□□ -1.54
VRK1-202ENST00000553683 SYTL4Q96C24 671 aaPredicted RBP5.46□□□□□ -1.54
VRK1-202ENST00000553683 SHDQ96IW2 340 aa5.46□□□□□ -1.54
VRK1-202ENST00000553683 HDAC8Q9BY41 377 aa5.46□□□□□ -1.54
VRK1-202ENST00000553683 PHAXQ9H814 394 aaKnown RBP5.46□□□□□ -1.54
VRK1-202ENST00000553683 CAPN10Q9HC96 672 aa5.46□□□□□ -1.54
VRK1-202ENST00000553683 ZNF214Q9UL59 606 aaPredicted RBP5.46□□□□□ -1.54
VRK1-202ENST00000553683 PCDHB12Q9Y5F1 795 aa5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms