RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 MS4A4AQ96JQ5 239 aa8.84□□□□□ -0.99
LIMA1-216ENST00000552909 SEC62Q99442 399 aaKnown RBP8.84□□□□□ -0.99
LIMA1-216ENST00000552909 BEGAINQ9BUH8 593 aa8.84□□□□□ -0.99
LIMA1-216ENST00000552909 DDX24Q9GZR7 859 aaKnown RBP eCLIP8.84□□□□□ -0.99
LIMA1-216ENST00000552909 RNF186Q9NXI6 227 aa8.84□□□□□ -0.99
LIMA1-216ENST00000552909 CCDC171Q6TFL3 1326 aa8.84□□□□□ -0.99
LIMA1-216ENST00000552909 IRF6O14896 467 aa8.83□□□□□ -1
LIMA1-216ENST00000552909 ZBTB48P10074 688 aaPredicted RBP8.83□□□□□ -1
LIMA1-216ENST00000552909 TM4SF4P48230 202 aa8.83□□□□□ -1
LIMA1-216ENST00000552909 JAG1P78504 1218 aa8.83□□□□□ -1
LIMA1-216ENST00000552909 ELF2Q15723 593 aa8.83□□□□□ -1
LIMA1-216ENST00000552909 SHROOM1Q2M3G4 852 aaPredicted RBP8.83□□□□□ -1
LIMA1-216ENST00000552909 COL13A1Q5TAT6 717 aaPredicted RBP8.83□□□□□ -1
LIMA1-216ENST00000552909 TMED8Q6PL24 325 aaPredicted RBP8.83□□□□□ -1
LIMA1-216ENST00000552909 AIDAQ96BJ3 306 aa8.83□□□□□ -1
LIMA1-216ENST00000552909 PTPN18Q99952 460 aa8.83□□□□□ -1
LIMA1-216ENST00000552909 IL25Q9H293 177 aa8.83□□□□□ -1
LIMA1-216ENST00000552909 YY1AP1Q9H869 796 aa8.83□□□□□ -1
LIMA1-216ENST00000552909 XPO5Q9HAV4 1204 aaKnown RBP eCLIP8.83□□□□□ -1
LIMA1-216ENST00000552909 PI4KBQ9UBF8 816 aa8.83□□□□□ -1
LIMA1-216ENST00000552909 NOL12Q9UGY1 213 aaKnown RBP eCLIP8.83□□□□□ -1
LIMA1-216ENST00000552909 V9GYY5 206 aaPredicted RBP8.83□□□□□ -1
LIMA1-216ENST00000552909 CASP8AP2Q9UKL3 1982 aa8.83□□□□□ -1
LIMA1-216ENST00000552909 BAZ2AQ9UIF9 1905 aaKnown RBP8.83□□□□□ -1
LIMA1-216ENST00000552909 SPDYE5A6NIY4 337 aa8.83□□□□□ -1
LIMA1-216ENST00000552909 HIP1O00291 1037 aa8.83□□□□□ -1
LIMA1-216ENST00000552909 IGF2BP3O00425 579 aaKnown RBP eCLIP8.83□□□□□ -1
LIMA1-216ENST00000552909 STX6O43752 255 aa8.83□□□□□ -1
LIMA1-216ENST00000552909 TBC1D12O60347 775 aa8.83□□□□□ -1
LIMA1-216ENST00000552909 F13A1P00488 732 aa8.83□□□□□ -1
LIMA1-216ENST00000552909 HSPA8P11142 646 aaKnown RBP8.83□□□□□ -1
LIMA1-216ENST00000552909 CHRM1P11229 460 aaPredicted RBP8.83□□□□□ -1
LIMA1-216ENST00000552909 ZNF75DP51815 510 aa8.83□□□□□ -1
LIMA1-216ENST00000552909 ERO1BQ86YB8 467 aa8.83□□□□□ -1
LIMA1-216ENST00000552909 RUFY2Q8WXA3 655 aa8.83□□□□□ -1
LIMA1-216ENST00000552909 FAM227BQ96M60 508 aa8.83□□□□□ -1
LIMA1-216ENST00000552909 UPF3BQ9BZI7 483 aaKnown RBP8.83□□□□□ -1
LIMA1-216ENST00000552909 TRIM5Q9C035 493 aa8.83□□□□□ -1
LIMA1-216ENST00000552909 DHX36Q9H2U1 1008 aaKnown RBP8.83□□□□□ -1
LIMA1-216ENST00000552909 R3HDMLQ9H3Y0 253 aa8.83□□□□□ -1
LIMA1-216ENST00000552909 DCP1AQ9NPI6 582 aaPredicted RBP8.83□□□□□ -1
LIMA1-216ENST00000552909 ANO2Q9NQ90 1003 aa8.83□□□□□ -1
LIMA1-216ENST00000552909 ZKSCAN7Q9P0L1 754 aaPredicted RBP8.83□□□□□ -1
LIMA1-216ENST00000552909 NRBP1Q9UHY1 535 aa8.83□□□□□ -1
LIMA1-216ENST00000552909 COL2A1P02458 1487 aaPredicted RBP8.83□□□□□ -1
LIMA1-216ENST00000552909 RNF113AO15541 343 aaKnown RBP8.82□□□□□ -1
LIMA1-216ENST00000552909 SGSM2O43147 1006 aa8.82□□□□□ -1
LIMA1-216ENST00000552909 SLU7O95391 586 aaKnown RBP8.82□□□□□ -1
LIMA1-216ENST00000552909 CYP2D6P10635 497 aa8.82□□□□□ -1
LIMA1-216ENST00000552909 NMIQ13287 307 aaPredicted RBP8.82□□□□□ -1
LIMA1-216ENST00000552909 PTPN14Q15678 1187 aa8.82□□□□□ -1
LIMA1-216ENST00000552909 TEX35Q5T0J7 233 aa8.82□□□□□ -1
LIMA1-216ENST00000552909 LUZP1Q86V48 1076 aa8.82□□□□□ -1
LIMA1-216ENST00000552909 METTL16Q86W50 562 aaKnown RBP8.82□□□□□ -1
LIMA1-216ENST00000552909 PLA2G4DQ86XP0 818 aa8.82□□□□□ -1
LIMA1-216ENST00000552909 TXLNBQ8N3L3 684 aa8.82□□□□□ -1
LIMA1-216ENST00000552909 CRNKL1Q9BZJ0 848 aaKnown RBP8.82□□□□□ -1
LIMA1-216ENST00000552909 RASSF4Q9H2L5 321 aa8.82□□□□□ -1
LIMA1-216ENST00000552909 CYP2D7A0A087X1C5 515 aa8.82□□□□□ -1
LIMA1-216ENST00000552909 M0R2C6 588 aa8.82□□□□□ -1
LIMA1-216ENST00000552909 CTNND1O60716 968 aaKnown RBP8.82□□□□□ -1
LIMA1-216ENST00000552909 TBC1D8O95759 1140 aa8.82□□□□□ -1
LIMA1-216ENST00000552909 PTPRAP18433 802 aa8.82□□□□□ -1
LIMA1-216ENST00000552909 CTCFP49711 727 aaPredicted RBP8.82□□□□□ -1
LIMA1-216ENST00000552909 TYRO3Q06418 890 aa8.82□□□□□ -1
LIMA1-216ENST00000552909 NOL9Q5SY16 702 aaKnown RBP8.82□□□□□ -1
LIMA1-216ENST00000552909 IFNL1Q8IU54 200 aa8.82□□□□□ -1
LIMA1-216ENST00000552909 BRI3BPQ8WY22 251 aa8.82□□□□□ -1
LIMA1-216ENST00000552909 APPBP2Q92624 585 aa8.82□□□□□ -1
LIMA1-216ENST00000552909 IL17RAQ96F46 866 aa8.82□□□□□ -1
LIMA1-216ENST00000552909 STRBPQ96SI9 672 aaKnown RBP8.82□□□□□ -1
LIMA1-216ENST00000552909 ZNF446Q9NWS9 450 aa8.82□□□□□ -1
LIMA1-216ENST00000552909 MCM9Q9NXL9 1143 aa8.82□□□□□ -1
LIMA1-216ENST00000552909 MRVI1Q9Y6F6 885 aa8.82□□□□□ -1
LIMA1-216ENST00000552909 ZHX2Q9Y6X8 837 aa8.82□□□□□ -1
LIMA1-216ENST00000552909 MANSC4A6NHS7 340 aaPredicted RBP8.81□□□□□ -1
LIMA1-216ENST00000552909 NEMFO60524 1076 aa8.81□□□□□ -1
LIMA1-216ENST00000552909 SYT1P21579 422 aa8.81□□□□□ -1
LIMA1-216ENST00000552909 CAP2P40123 477 aa8.81□□□□□ -1
LIMA1-216ENST00000552909 PPATQ06203 517 aa8.81□□□□□ -1
LIMA1-216ENST00000552909 MUM1L1Q5H9M0 696 aa8.81□□□□□ -1
LIMA1-216ENST00000552909 FOXP4Q8IVH2 680 aaPredicted RBP8.81□□□□□ -1
LIMA1-216ENST00000552909 SCYL3Q8IZE3 742 aa8.81□□□□□ -1
LIMA1-216ENST00000552909 CRACR2BQ8N4Y2 399 aaPredicted RBP8.81□□□□□ -1
LIMA1-216ENST00000552909 CACTINQ8WUQ7 758 aaKnown RBP8.81□□□□□ -1
LIMA1-216ENST00000552909 GTF3C6Q969F1 213 aa8.81□□□□□ -1
LIMA1-216ENST00000552909 CLIP2Q9UDT6 1046 aa8.81□□□□□ -1
LIMA1-216ENST00000552909 RSPH14Q9UHP6 348 aa8.81□□□□□ -1
LIMA1-216ENST00000552909 HERC5Q9UII4 1024 aaKnown RBP8.81□□□□□ -1
LIMA1-216ENST00000552909 SLC4A4Q9Y6R1 1079 aa8.81□□□□□ -1
LIMA1-216ENST00000552909 CCL15-CCL14A0A0B4J2E2 113 aa8.8□□□□□ -1
LIMA1-216ENST00000552909 TESPA1A2RU30 521 aaPredicted RBP8.8□□□□□ -1
LIMA1-216ENST00000552909 GDF11O95390 407 aa8.8□□□□□ -1
LIMA1-216ENST00000552909 POLR3DP05423 398 aaPredicted RBP8.8□□□□□ -1
LIMA1-216ENST00000552909 HLA-DOAP06340 250 aa8.8□□□□□ -1
LIMA1-216ENST00000552909 SREBF2Q12772 1141 aa8.8□□□□□ -1
LIMA1-216ENST00000552909 PPIL2Q13356 520 aa8.8□□□□□ -1
LIMA1-216ENST00000552909 CCL15Q16663 113 aa8.8□□□□□ -1
LIMA1-216ENST00000552909 NYAP1Q6ZVC0 841 aa8.8□□□□□ -1
LIMA1-216ENST00000552909 SLC44A5Q8NCS7 719 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms