RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 IPO9Q96P70 1041 aaKnown RBP8.61□□□□□ -1.03
LIMA1-210ENST00000552045 FOXQ1Q9C009 403 aa8.61□□□□□ -1.03
LIMA1-210ENST00000552045 PIDD1Q9HB75 910 aa8.61□□□□□ -1.03
LIMA1-210ENST00000552045 APEX2Q9UBZ4 518 aa8.61□□□□□ -1.03
LIMA1-210ENST00000552045 A0A087X0B3 334 aa8.6□□□□□ -1.03
LIMA1-210ENST00000552045 SPDYE3A6NKU9 549 aa8.6□□□□□ -1.03
LIMA1-210ENST00000552045 RAPGEF3O95398 923 aa8.6□□□□□ -1.03
LIMA1-210ENST00000552045 TIAF1O95411 115 aa8.6□□□□□ -1.03
LIMA1-210ENST00000552045 ITGAVP06756 1048 aa8.6□□□□□ -1.03
LIMA1-210ENST00000552045 STAT3P40763 770 aa8.6□□□□□ -1.03
LIMA1-210ENST00000552045 ASPAP45381 313 aa8.6□□□□□ -1.03
LIMA1-210ENST00000552045 ANKRD39Q53RE8 183 aa8.6□□□□□ -1.03
LIMA1-210ENST00000552045 DCAF15Q66K64 600 aa8.6□□□□□ -1.03
LIMA1-210ENST00000552045 SCUBE1Q8IWY4 988 aa8.6□□□□□ -1.03
LIMA1-210ENST00000552045 SVOPQ8N4V2 548 aa8.6□□□□□ -1.03
LIMA1-210ENST00000552045 C12orf50Q8NA57 414 aaPredicted RBP8.6□□□□□ -1.03
LIMA1-210ENST00000552045 PPP1R13LQ8WUF5 828 aa8.6□□□□□ -1.03
LIMA1-210ENST00000552045 CHAC2Q8WUX2 184 aa8.6□□□□□ -1.03
LIMA1-210ENST00000552045 ZNF512BQ96KM6 892 aaPredicted RBP8.6□□□□□ -1.03
LIMA1-210ENST00000552045 FGD4Q96M96 766 aa8.6□□□□□ -1.03
LIMA1-210ENST00000552045 SSU72Q9NP77 194 aaKnown RBP8.6□□□□□ -1.03
LIMA1-210ENST00000552045 PDGFRBP09619 1106 aa8.59□□□□□ -1.03
LIMA1-210ENST00000552045 CNGA1P29973 690 aa8.59□□□□□ -1.03
LIMA1-210ENST00000552045 NOL8Q76FK4 1167 aaKnown RBP8.59□□□□□ -1.03
LIMA1-210ENST00000552045 ADAT2Q7Z6V5 191 aaKnown RBP8.59□□□□□ -1.03
LIMA1-210ENST00000552045 ZNF227Q86WZ6 799 aa8.59□□□□□ -1.03
LIMA1-210ENST00000552045 SMYD4Q8IYR2 804 aaPredicted RBP8.59□□□□□ -1.03
LIMA1-210ENST00000552045 XAGE3Q8WTP9 111 aa8.59□□□□□ -1.03
LIMA1-210ENST00000552045 PPP1R14AQ96A00 147 aa8.59□□□□□ -1.03
LIMA1-210ENST00000552045 CAAP1Q9H8G2 361 aa8.59□□□□□ -1.03
LIMA1-210ENST00000552045 ACTL7BQ9Y614 415 aa8.59□□□□□ -1.03
LIMA1-210ENST00000552045 KCNQ2O43526 872 aa8.58□□□□□ -1.04
LIMA1-210ENST00000552045 LRIG2O94898 1065 aa8.58□□□□□ -1.04
LIMA1-210ENST00000552045 ARHGEF15O94989 841 aa8.58□□□□□ -1.04
LIMA1-210ENST00000552045 PARNO95453 639 aaKnown RBP8.58□□□□□ -1.04
LIMA1-210ENST00000552045 CAPNS1P04632 268 aa8.58□□□□□ -1.04
LIMA1-210ENST00000552045 FGFR1P11362 822 aa8.58□□□□□ -1.04
LIMA1-210ENST00000552045 POU3F3P20264 500 aaPredicted RBP8.58□□□□□ -1.04
LIMA1-210ENST00000552045 NBPF12Q5TAG4 269 aaPredicted RBP8.58□□□□□ -1.04
LIMA1-210ENST00000552045 IGF2-ASQ6U949 168 aa8.58□□□□□ -1.04
LIMA1-210ENST00000552045 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.58□□□□□ -1.04
LIMA1-210ENST00000552045 JAMLQ86YT9 394 aa8.58□□□□□ -1.04
LIMA1-210ENST00000552045 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.58□□□□□ -1.04
LIMA1-210ENST00000552045 MFSD2AQ8NA29 543 aa8.58□□□□□ -1.04
LIMA1-210ENST00000552045 C2CD4AQ8NCU7 369 aaPredicted RBP8.58□□□□□ -1.04
LIMA1-210ENST00000552045 TRIM11Q96F44 468 aa8.58□□□□□ -1.04
LIMA1-210ENST00000552045 CLUHP3Q96NS8 147 aa8.58□□□□□ -1.04
LIMA1-210ENST00000552045 LGR4Q9BXB1 951 aa8.58□□□□□ -1.04
LIMA1-210ENST00000552045 MRPL4Q9BYD3 311 aaKnown RBP8.58□□□□□ -1.04
LIMA1-210ENST00000552045 FAM126AQ9BYI3 521 aaPredicted RBP8.58□□□□□ -1.04
LIMA1-210ENST00000552045 MKRN2Q9H000 416 aaKnown RBP8.58□□□□□ -1.04
LIMA1-210ENST00000552045 GBP3Q9H0R5 595 aa8.58□□□□□ -1.04
LIMA1-210ENST00000552045 MRPL18Q9H0U6 180 aaKnown RBP8.58□□□□□ -1.04
LIMA1-210ENST00000552045 RRAGCQ9HB90 399 aa8.58□□□□□ -1.04
LIMA1-210ENST00000552045 ENAMQ9NRM1 1142 aa8.58□□□□□ -1.04
LIMA1-210ENST00000552045 FAM105AQ9NUU6 356 aa8.58□□□□□ -1.04
LIMA1-210ENST00000552045 PCOLCE2Q9UKZ9 415 aa8.58□□□□□ -1.04
LIMA1-210ENST00000552045 ATP8A1Q9Y2Q0 1164 aa8.58□□□□□ -1.04
LIMA1-210ENST00000552045 ZNF451Q9Y4E5 1061 aa8.58□□□□□ -1.04
LIMA1-210ENST00000552045 PDE8AO60658 829 aa8.57□□□□□ -1.04
LIMA1-210ENST00000552045 PPM1BO75688 479 aa8.57□□□□□ -1.04
LIMA1-210ENST00000552045 CD247P20963 164 aa8.57□□□□□ -1.04
LIMA1-210ENST00000552045 FDX2Q6P4F2 183 aa8.57□□□□□ -1.04
LIMA1-210ENST00000552045 ARMCX6Q7L4S7 300 aa8.57□□□□□ -1.04
LIMA1-210ENST00000552045 PRPF38AQ8NAV1 312 aaKnown RBP8.57□□□□□ -1.04
LIMA1-210ENST00000552045 BVESQ8NE79 360 aa8.57□□□□□ -1.04
LIMA1-210ENST00000552045 CEP131Q9UPN4 1083 aa8.57□□□□□ -1.04
LIMA1-210ENST00000552045 SUGT1Q9Y2Z0 365 aa8.57□□□□□ -1.04
LIMA1-210ENST00000552045 DNAJC25-GNG10A0A024R161 153 aa8.56□□□□□ -1.04
LIMA1-210ENST00000552045 PRODHO43272 600 aa8.56□□□□□ -1.04
LIMA1-210ENST00000552045 S100BP04271 92 aaPredicted RBP8.56□□□□□ -1.04
LIMA1-210ENST00000552045 PABPC1P11940 636 aaKnown RBP8.56□□□□□ -1.04
LIMA1-210ENST00000552045 SOX5P35711 763 aa8.56□□□□□ -1.04
LIMA1-210ENST00000552045 GRIA2P42262 883 aa8.56□□□□□ -1.04
LIMA1-210ENST00000552045 SUMO1P63165 101 aaKnown RBP8.56□□□□□ -1.04
LIMA1-210ENST00000552045 NSMFQ6X4W1 530 aa8.56□□□□□ -1.04
LIMA1-210ENST00000552045 C7orf61Q8IZ16 206 aa8.56□□□□□ -1.04
LIMA1-210ENST00000552045 DNAJB8Q8NHS0 232 aa8.56□□□□□ -1.04
LIMA1-210ENST00000552045 VWCEQ96DN2 955 aa8.56□□□□□ -1.04
LIMA1-210ENST00000552045 HOMER2Q9NSB8 354 aa8.56□□□□□ -1.04
LIMA1-210ENST00000552045 WHRNQ9P202 907 aa8.56□□□□□ -1.04
LIMA1-210ENST00000552045 COL17A1Q9UMD9 1497 aaPredicted RBP8.56□□□□□ -1.04
LIMA1-210ENST00000552045 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP8.55□□□□□ -1.04
LIMA1-210ENST00000552045 SHOXO15266 292 aa8.55□□□□□ -1.04
LIMA1-210ENST00000552045 TBX1O43435 398 aa8.55□□□□□ -1.04
LIMA1-210ENST00000552045 CDKN1CP49918 316 aaPredicted RBP8.55□□□□□ -1.04
LIMA1-210ENST00000552045 RNF4P78317 190 aa8.55□□□□□ -1.04
LIMA1-210ENST00000552045 AUHQ13825 339 aaKnown RBP8.55□□□□□ -1.04
LIMA1-210ENST00000552045 ANKRD34AQ69YU3 496 aa8.55□□□□□ -1.04
LIMA1-210ENST00000552045 RNF180Q86T96 592 aa8.55□□□□□ -1.04
LIMA1-210ENST00000552045 FERMT3Q86UX7 667 aa8.55□□□□□ -1.04
LIMA1-210ENST00000552045 OSBP2Q969R2 916 aa8.55□□□□□ -1.04
LIMA1-210ENST00000552045 RCC1LQ96I51 464 aaKnown RBP8.55□□□□□ -1.04
LIMA1-210ENST00000552045 MRGPRX3Q96LB0 322 aa8.55□□□□□ -1.04
LIMA1-210ENST00000552045 KREMEN1Q96MU8 473 aa8.55□□□□□ -1.04
LIMA1-210ENST00000552045 PLVAPQ9BX97 442 aa8.55□□□□□ -1.04
LIMA1-210ENST00000552045 GP6Q9HCN6 339 aa8.55□□□□□ -1.04
LIMA1-210ENST00000552045 KRBA1A5PL33 1030 aa8.54□□□□□ -1.04
LIMA1-210ENST00000552045 GSG1L2A8MUP6 293 aa8.54□□□□□ -1.04
LIMA1-210ENST00000552045 NOP56O00567 594 aaKnown RBP8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms