RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 BACE1P56817 501 aa12.96□□□□□ -0.33
VPS29-208ENST00000550267 PDE3AQ14432 1141 aa12.96□□□□□ -0.33
VPS29-208ENST00000550267 Q3C1V9 767 aa12.96□□□□□ -0.33
VPS29-208ENST00000550267 FAM109BQ6ICB4 259 aaPredicted RBP12.96□□□□□ -0.33
VPS29-208ENST00000550267 PI16Q6UXB8 463 aa12.96□□□□□ -0.33
VPS29-208ENST00000550267 TBC1D9Q6ZT07 1266 aa12.96□□□□□ -0.33
VPS29-208ENST00000550267 TEX11Q8IYF3 940 aa12.96□□□□□ -0.33
VPS29-208ENST00000550267 NSUN4Q96CB9 384 aaKnown RBP12.96□□□□□ -0.33
VPS29-208ENST00000550267 WDR18Q9BV38 432 aa12.96□□□□□ -0.33
VPS29-208ENST00000550267 PORCNQ9H237 461 aa12.96□□□□□ -0.33
VPS29-208ENST00000550267 COPRSQ9NQ92 184 aa12.96□□□□□ -0.33
VPS29-208ENST00000550267 TMOD4Q9NZQ9 345 aa12.96□□□□□ -0.33
VPS29-208ENST00000550267 HMG20BQ9P0W2 317 aa12.96□□□□□ -0.33
VPS29-208ENST00000550267 RBPJLQ9UBG7 517 aa12.96□□□□□ -0.33
VPS29-208ENST00000550267 HERC5Q9UII4 1024 aaKnown RBP12.96□□□□□ -0.33
VPS29-208ENST00000550267 UNC80Q8N2C7 3258 aa12.95□□□□□ -0.34
VPS29-208ENST00000550267 MAP4K4O95819 1239 aaPredicted RBP12.95□□□□□ -0.34
VPS29-208ENST00000550267 LDHCP07864 332 aa12.95□□□□□ -0.34
VPS29-208ENST00000550267 MAPK4P31152 587 aa12.95□□□□□ -0.34
VPS29-208ENST00000550267 GGCXP38435 758 aa12.95□□□□□ -0.34
VPS29-208ENST00000550267 RGS2P41220 211 aa12.95□□□□□ -0.34
VPS29-208ENST00000550267 SLC4A3P48751 1232 aa12.95□□□□□ -0.34
VPS29-208ENST00000550267 ERVK-9P63128 1117 aa12.95□□□□□ -0.34
VPS29-208ENST00000550267 ERVK-24P63145 666 aa12.95□□□□□ -0.34
VPS29-208ENST00000550267 GSTO1P78417 241 aa12.95□□□□□ -0.34
VPS29-208ENST00000550267 TFCP2Q12800 502 aa12.95□□□□□ -0.34
VPS29-208ENST00000550267 MVPQ14764 893 aaKnown RBP12.95□□□□□ -0.34
VPS29-208ENST00000550267 SHROOM1Q2M3G4 852 aaPredicted RBP12.95□□□□□ -0.34
VPS29-208ENST00000550267 MORN1Q5T089 497 aa12.95□□□□□ -0.34
VPS29-208ENST00000550267 GPR142Q7Z601 462 aa12.95□□□□□ -0.34
VPS29-208ENST00000550267 SH3RF3Q8TEJ3 882 aaPredicted RBP12.95□□□□□ -0.34
VPS29-208ENST00000550267 PAGR1Q9BTK6 254 aa12.95□□□□□ -0.34
VPS29-208ENST00000550267 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.95□□□□□ -0.34
VPS29-208ENST00000550267 PLEKHH3Q7Z736 793 aa12.94□□□□□ -0.34
VPS29-208ENST00000550267 CCAR1Q8IX12 1150 aaKnown RBP12.94□□□□□ -0.34
VPS29-208ENST00000550267 SPATA5Q8NB90 893 aa12.94□□□□□ -0.34
VPS29-208ENST00000550267 NEUROD6Q96NK8 337 aa12.94□□□□□ -0.34
VPS29-208ENST00000550267 APBA2Q99767 749 aa12.94□□□□□ -0.34
VPS29-208ENST00000550267 LBHD1Q9BQE6 289 aaPredicted RBP12.94□□□□□ -0.34
VPS29-208ENST00000550267 TMUB1Q9BVT8 246 aa12.94□□□□□ -0.34
VPS29-208ENST00000550267 SENP6Q9GZR1 1112 aaPredicted RBP12.94□□□□□ -0.34
VPS29-208ENST00000550267 DNAJC18Q9H819 358 aa12.94□□□□□ -0.34
VPS29-208ENST00000550267 RAI14Q9P0K7 980 aa12.94□□□□□ -0.34
VPS29-208ENST00000550267 AKAP2Q9Y2D5 859 aa12.94□□□□□ -0.34
VPS29-208ENST00000550267 SIPA1L1O43166 1804 aa12.93□□□□□ -0.34
VPS29-208ENST00000550267 C19orf81C9J6K1 198 aa12.93□□□□□ -0.34
VPS29-208ENST00000550267 USP17L10C9JJH3 530 aa12.93□□□□□ -0.34
VPS29-208ENST00000550267 ANP32CO43423 234 aa12.93□□□□□ -0.34
VPS29-208ENST00000550267 GDF11O95390 407 aa12.93□□□□□ -0.34
VPS29-208ENST00000550267 ASNSP08243 561 aa12.93□□□□□ -0.34
VPS29-208ENST00000550267 COPS2P61201 443 aa12.93□□□□□ -0.34
VPS29-208ENST00000550267 ZNF697Q5TEC3 545 aa12.93□□□□□ -0.34
VPS29-208ENST00000550267 CWC22Q9HCG8 908 aaKnown RBP12.93□□□□□ -0.34
VPS29-208ENST00000550267 SMC4Q9NTJ3 1288 aa12.93□□□□□ -0.34
VPS29-208ENST00000550267 PI4KBQ9UBF8 816 aa12.93□□□□□ -0.34
VPS29-208ENST00000550267 MAST2Q6P0Q8 1798 aa12.93□□□□□ -0.34
VPS29-208ENST00000550267 MAP2K5Q13163 448 aa12.92□□□□□ -0.34
VPS29-208ENST00000550267 ALDH1L2Q3SY69 923 aa12.92□□□□□ -0.34
VPS29-208ENST00000550267 EDC3Q96F86 508 aaKnown RBP12.92□□□□□ -0.34
VPS29-208ENST00000550267 CDX2Q99626 313 aaPredicted RBP12.92□□□□□ -0.34
VPS29-208ENST00000550267 MEIS3Q99687 375 aa12.92□□□□□ -0.34
VPS29-208ENST00000550267 PRR14Q9BWN1 585 aa12.92□□□□□ -0.34
VPS29-208ENST00000550267 FLRT1Q9NZU1 646 aa12.92□□□□□ -0.34
VPS29-208ENST00000550267 NDUFB9Q9Y6M9 179 aa12.92□□□□□ -0.34
VPS29-208ENST00000550267 E9PSI1 815 aa12.91□□□□□ -0.34
VPS29-208ENST00000550267 CNMDO75829 334 aa12.91□□□□□ -0.34
VPS29-208ENST00000550267 GORABQ5T7V8 394 aa12.91□□□□□ -0.34
VPS29-208ENST00000550267 MAPKAPK5Q8IW41 473 aa12.91□□□□□ -0.34
VPS29-208ENST00000550267 GTF3C2Q8WUA4 911 aaPredicted RBP12.91□□□□□ -0.34
VPS29-208ENST00000550267 TGFBRAP1Q8WUH2 860 aa12.91□□□□□ -0.34
VPS29-208ENST00000550267 NOL10Q9BSC4 688 aaKnown RBP12.91□□□□□ -0.34
VPS29-208ENST00000550267 DHX36Q9H2U1 1008 aaKnown RBP12.91□□□□□ -0.34
VPS29-208ENST00000550267 AATFQ9NY61 560 aaKnown RBP eCLIP12.91□□□□□ -0.34
VPS29-208ENST00000550267 LRP2BPQ9P2M1 347 aa12.91□□□□□ -0.34
VPS29-208ENST00000550267 DDX20Q9UHI6 824 aaKnown RBP12.91□□□□□ -0.34
VPS29-208ENST00000550267 ZBTB21Q9ULJ3 1066 aa12.91□□□□□ -0.34
VPS29-208ENST00000550267 FRMPD3Q5JV73 1810 aa12.9□□□□□ -0.34
VPS29-208ENST00000550267 SRGAP3O43295 1099 aa12.9□□□□□ -0.34
VPS29-208ENST00000550267 ARID4AP29374 1257 aaPredicted RBP12.9□□□□□ -0.34
VPS29-208ENST00000550267 CNGA1P29973 690 aa12.9□□□□□ -0.34
VPS29-208ENST00000550267 MCAMP43121 646 aa12.9□□□□□ -0.34
VPS29-208ENST00000550267 RTP1P59025 263 aa12.9□□□□□ -0.34
VPS29-208ENST00000550267 SHHQ15465 462 aa12.9□□□□□ -0.34
VPS29-208ENST00000550267 WDR78Q5VTH9 848 aa12.9□□□□□ -0.34
VPS29-208ENST00000550267 MFSD14CQ5VZR4 134 aa12.9□□□□□ -0.34
VPS29-208ENST00000550267 USP17L2Q6R6M4 530 aa12.9□□□□□ -0.34
VPS29-208ENST00000550267 METTL16Q86W50 562 aaKnown RBP12.9□□□□□ -0.34
VPS29-208ENST00000550267 FOXP4Q8IVH2 680 aaPredicted RBP12.9□□□□□ -0.34
VPS29-208ENST00000550267 CRACR2BQ8N4Y2 399 aaPredicted RBP12.9□□□□□ -0.34
VPS29-208ENST00000550267 MAFAQ8NHW3 353 aaPredicted RBP12.9□□□□□ -0.34
VPS29-208ENST00000550267 TRIM34Q9BYJ4 488 aa12.9□□□□□ -0.34
VPS29-208ENST00000550267 PRKAG2Q9UGJ0 569 aa12.9□□□□□ -0.34
VPS29-208ENST00000550267 PALD1Q9ULE6 856 aa12.9□□□□□ -0.34
VPS29-208ENST00000550267 NOB1Q9ULX3 412 aaKnown RBP12.9□□□□□ -0.34
VPS29-208ENST00000550267 HDAC5Q9UQL6 1122 aa12.9□□□□□ -0.34
VPS29-208ENST00000550267 CUL9Q8IWT3 2517 aa12.9□□□□□ -0.34
VPS29-208ENST00000550267 FLT1P17948 1338 aa12.89□□□□□ -0.35
VPS29-208ENST00000550267 BAG3O95817 575 aa12.89□□□□□ -0.35
VPS29-208ENST00000550267 SLFN5Q08AF3 891 aa12.89□□□□□ -0.35
VPS29-208ENST00000550267 ZYXQ15942 572 aaKnown RBP12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms