RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 ACBD3Q9H3P7 528 aa6.55□□□□□ -1.36
VPS29-205ENST00000548539 CCSER2Q9H7U1 834 aa6.55□□□□□ -1.36
VPS29-205ENST00000548539 PEX10O60683 326 aa6.54□□□□□ -1.36
VPS29-205ENST00000548539 SEMA7AO75326 666 aa6.54□□□□□ -1.36
VPS29-205ENST00000548539 PAGE1O75459 146 aa6.54□□□□□ -1.36
VPS29-205ENST00000548539 CAP2P40123 477 aa6.54□□□□□ -1.36
VPS29-205ENST00000548539 INPP5AQ14642 412 aa6.54□□□□□ -1.36
VPS29-205ENST00000548539 NKG7Q16617 165 aa6.54□□□□□ -1.36
VPS29-205ENST00000548539 ZNF605Q86T29 641 aa6.54□□□□□ -1.36
VPS29-205ENST00000548539 USP48Q86UV5 1035 aa6.54□□□□□ -1.36
VPS29-205ENST00000548539 CREG2Q8IUH2 290 aa6.54□□□□□ -1.36
VPS29-205ENST00000548539 C8orf37Q96NL8 207 aa6.54□□□□□ -1.36
VPS29-205ENST00000548539 ENC1O14682 589 aa6.53□□□□□ -1.36
VPS29-205ENST00000548539 TNNI2P48788 182 aa6.53□□□□□ -1.36
VPS29-205ENST00000548539 ST13P50502 369 aaKnown RBP6.53□□□□□ -1.36
VPS29-205ENST00000548539 ETF1P62495 437 aaKnown RBP6.53□□□□□ -1.36
VPS29-205ENST00000548539 RACK1P63244 317 aaKnown RBP6.53□□□□□ -1.36
VPS29-205ENST00000548539 LRFN4Q6PJG9 635 aa6.53□□□□□ -1.36
VPS29-205ENST00000548539 HDXQ7Z353 690 aa6.53□□□□□ -1.36
VPS29-205ENST00000548539 PDZD8Q8NEN9 1154 aa6.53□□□□□ -1.36
VPS29-205ENST00000548539 TGIF2Q9GZN2 237 aa6.53□□□□□ -1.36
VPS29-205ENST00000548539 WNT10AQ9GZT5 417 aa6.53□□□□□ -1.36
VPS29-205ENST00000548539 C19orf44Q9H6X5 657 aa6.53□□□□□ -1.36
VPS29-205ENST00000548539 CAPN10Q9HC96 672 aa6.53□□□□□ -1.36
VPS29-205ENST00000548539 COPRSQ9NQ92 184 aa6.53□□□□□ -1.36
VPS29-205ENST00000548539 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.53□□□□□ -1.36
VPS29-205ENST00000548539 KCTD3Q9Y597 815 aa6.53□□□□□ -1.36
VPS29-205ENST00000548539 MYOCOSA0A1B0GUC4 107 aa6.52□□□□□ -1.37
VPS29-205ENST00000548539 RFXAPO00287 272 aa6.52□□□□□ -1.37
VPS29-205ENST00000548539 CCDC85BQ15834 202 aaPredicted RBP6.52□□□□□ -1.37
VPS29-205ENST00000548539 MAP3K11Q16584 847 aa6.52□□□□□ -1.37
VPS29-205ENST00000548539 HID1Q8IV36 788 aa6.52□□□□□ -1.37
VPS29-205ENST00000548539 TMEM151BQ8IW70 566 aa6.52□□□□□ -1.37
VPS29-205ENST00000548539 LILRA2Q8N149 483 aa6.52□□□□□ -1.37
VPS29-205ENST00000548539 OXR1Q8N573 874 aa6.52□□□□□ -1.37
VPS29-205ENST00000548539 CXorf38Q8TB03 319 aa6.52□□□□□ -1.37
VPS29-205ENST00000548539 PIWIL2Q8TC59 973 aaKnown RBP6.52□□□□□ -1.37
VPS29-205ENST00000548539 RTEL1Q9NZ71 1219 aa6.52□□□□□ -1.37
VPS29-205ENST00000548539 DDX41Q9UJV9 622 aaKnown RBP6.52□□□□□ -1.37
VPS29-205ENST00000548539 CYP8B1Q9UNU6 501 aa6.52□□□□□ -1.37
VPS29-205ENST00000548539 TEX51A0A1B0GUA7 166 aa6.51□□□□□ -1.37
VPS29-205ENST00000548539 TRIM13O60858 407 aa6.51□□□□□ -1.37
VPS29-205ENST00000548539 PRRT2Q7Z6L0 340 aaPredicted RBP6.51□□□□□ -1.37
VPS29-205ENST00000548539 XAGE3Q8WTP9 111 aa6.51□□□□□ -1.37
VPS29-205ENST00000548539 CWC22Q9HCG8 908 aaKnown RBP6.51□□□□□ -1.37
VPS29-205ENST00000548539 KBTBD4Q9NVX7 518 aa6.51□□□□□ -1.37
VPS29-205ENST00000548539 PPP1R1BQ9UD71 204 aaPredicted RBP6.51□□□□□ -1.37
VPS29-205ENST00000548539 WASH4PA8MWX3 477 aa6.5□□□□□ -1.37
VPS29-205ENST00000548539 SASH1O94885 1247 aa6.5□□□□□ -1.37
VPS29-205ENST00000548539 CST3P01034 146 aaPredicted RBP6.5□□□□□ -1.37
VPS29-205ENST00000548539 CELA3AP09093 270 aa6.5□□□□□ -1.37
VPS29-205ENST00000548539 TPP2P29144 1249 aaPredicted RBP6.5□□□□□ -1.37
VPS29-205ENST00000548539 RASIP1Q5U651 963 aa6.5□□□□□ -1.37
VPS29-205ENST00000548539 PRAMEF13Q5VWM6 474 aa6.5□□□□□ -1.37
VPS29-205ENST00000548539 ERMP1Q7Z2K6 904 aa6.5□□□□□ -1.37
VPS29-205ENST00000548539 CDH24Q86UP0 819 aa6.5□□□□□ -1.37
VPS29-205ENST00000548539 ZNF654Q8IZM8 581 aa6.5□□□□□ -1.37
VPS29-205ENST00000548539 PLPPR2Q96GM1 343 aa6.5□□□□□ -1.37
VPS29-205ENST00000548539 TINF2Q9BSI4 451 aa6.5□□□□□ -1.37
VPS29-205ENST00000548539 ZNF552Q9H707 407 aaPredicted RBP6.5□□□□□ -1.37
VPS29-205ENST00000548539 SP110Q9HB58 689 aa6.5□□□□□ -1.37
VPS29-205ENST00000548539 MINDY4BA8MYZ0 360 aa6.49□□□□□ -1.37
VPS29-205ENST00000548539 PDE6BP35913 854 aa6.49□□□□□ -1.37
VPS29-205ENST00000548539 ERICH6BQ5W0A0 696 aa6.49□□□□□ -1.37
VPS29-205ENST00000548539 GGNQ86UU5 652 aa6.49□□□□□ -1.37
VPS29-205ENST00000548539 SREK1Q8WXA9 508 aaKnown RBP6.49□□□□□ -1.37
VPS29-205ENST00000548539 BORCS6Q96GS4 357 aa6.49□□□□□ -1.37
VPS29-205ENST00000548539 INTS4Q96HW7 963 aaKnown RBP6.49□□□□□ -1.37
VPS29-205ENST00000548539 NOC4LQ9BVI4 516 aaKnown RBP6.49□□□□□ -1.37
VPS29-205ENST00000548539 SGPP1Q9BX95 441 aa6.49□□□□□ -1.37
VPS29-205ENST00000548539 TRIT1Q9H3H1 467 aaKnown RBP6.49□□□□□ -1.37
VPS29-205ENST00000548539 PPM1HQ9ULR3 514 aa6.49□□□□□ -1.37
VPS29-205ENST00000548539 INPP5FQ9Y2H2 1132 aa6.49□□□□□ -1.37
VPS29-205ENST00000548539 FITM1A5D6W6 292 aa6.48□□□□□ -1.37
VPS29-205ENST00000548539 RBAK-RBAKDNI3L0D1 243 aa6.48□□□□□ -1.37
VPS29-205ENST00000548539 CELA3BP08861 270 aa6.48□□□□□ -1.37
VPS29-205ENST00000548539 ZGLP1P0C6A0 271 aa6.48□□□□□ -1.37
VPS29-205ENST00000548539 GBP2P32456 591 aaPredicted RBP6.48□□□□□ -1.37
VPS29-205ENST00000548539 SKOR2Q2VWA4 1001 aaPredicted RBP6.48□□□□□ -1.37
VPS29-205ENST00000548539 DHX38Q92620 1227 aaKnown RBP6.48□□□□□ -1.37
VPS29-205ENST00000548539 SYTL4Q96C24 671 aaPredicted RBP6.48□□□□□ -1.37
VPS29-205ENST00000548539 GCM1Q9NP62 436 aa6.48□□□□□ -1.37
VPS29-205ENST00000548539 YBX2Q9Y2T7 364 aaKnown RBP6.48□□□□□ -1.37
VPS29-205ENST00000548539 SNCAIPQ9Y6H5 919 aa6.48□□□□□ -1.37
VPS29-205ENST00000548539 PTPN11Q06124 597 aaPredicted RBP6.47□□□□□ -1.37
VPS29-205ENST00000548539 EGR3Q06889 387 aa6.47□□□□□ -1.37
VPS29-205ENST00000548539 GAB4Q2WGN9 574 aa6.47□□□□□ -1.37
VPS29-205ENST00000548539 TIGD5Q53EQ6 642 aa6.47□□□□□ -1.37
VPS29-205ENST00000548539 PCNX4Q63HM2 1172 aa6.47□□□□□ -1.37
VPS29-205ENST00000548539 RELL1Q8IUW5 271 aa6.47□□□□□ -1.37
VPS29-205ENST00000548539 XYLT2Q9H1B5 865 aa6.47□□□□□ -1.37
VPS29-205ENST00000548539 DUSP15Q9H1R2 295 aaPredicted RBP6.47□□□□□ -1.37
VPS29-205ENST00000548539 DUSP13Q9UII6 198 aa6.47□□□□□ -1.37
VPS29-205ENST00000548539 TLR6Q9Y2C9 796 aa6.47□□□□□ -1.37
VPS29-205ENST00000548539 DNAJA1P31689 397 aaKnown RBP6.46□□□□□ -1.38
VPS29-205ENST00000548539 ETV3P41162 512 aa6.46□□□□□ -1.38
VPS29-205ENST00000548539 KRTAP10-2P60368 255 aa6.46□□□□□ -1.38
VPS29-205ENST00000548539 FAM160A1Q05DH4 1040 aa6.46□□□□□ -1.38
VPS29-205ENST00000548539 PAK2Q13177 524 aa6.46□□□□□ -1.38
VPS29-205ENST00000548539 SSPNQ14714 243 aa6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms