RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 RBM25P49756 843 aaKnown RBP14.31□□□□□ -0.12
DDX55-210ENST00000543016 ATP2B2Q01814 1243 aa14.31□□□□□ -0.12
DDX55-210ENST00000543016 KIF23Q02241 960 aaPredicted RBP14.31□□□□□ -0.12
DDX55-210ENST00000543016 MTMR2Q13614 643 aa14.31□□□□□ -0.12
DDX55-210ENST00000543016 CCL15Q16663 113 aa14.31□□□□□ -0.12
DDX55-210ENST00000543016 SHROOM1Q2M3G4 852 aaPredicted RBP14.31□□□□□ -0.12
DDX55-210ENST00000543016 FBXL16Q8N461 479 aa14.31□□□□□ -0.12
DDX55-210ENST00000543016 GMCL1P1Q8NEA9 526 aa14.31□□□□□ -0.12
DDX55-210ENST00000543016 JAKMIP1Q96N16 626 aaKnown RBP14.31□□□□□ -0.12
DDX55-210ENST00000543016 C22orf23Q9BZE7 217 aa14.31□□□□□ -0.12
DDX55-210ENST00000543016 VCPKMTQ9H867 229 aa14.31□□□□□ -0.12
DDX55-210ENST00000543016 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.31□□□□□ -0.12
DDX55-210ENST00000543016 ATAD5Q96QE3 1844 aa14.31□□□□□ -0.12
DDX55-210ENST00000543016 A0A1W2PRG0 241 aa14.3□□□□□ -0.12
DDX55-210ENST00000543016 IFIT3O14879 490 aaKnown RBP14.3□□□□□ -0.12
DDX55-210ENST00000543016 PRC1O43663 620 aa14.3□□□□□ -0.12
DDX55-210ENST00000543016 LIFRP42702 1097 aa14.3□□□□□ -0.12
DDX55-210ENST00000543016 HTRA3P83110 453 aa14.3□□□□□ -0.12
DDX55-210ENST00000543016 EXOSC10Q01780 885 aaKnown RBP14.3□□□□□ -0.12
DDX55-210ENST00000543016 RCSD1Q6JBY9 416 aa14.3□□□□□ -0.12
DDX55-210ENST00000543016 CYB5R4Q7L1T6 521 aa14.3□□□□□ -0.12
DDX55-210ENST00000543016 ANKRD23Q86SG2 305 aa14.3□□□□□ -0.12
DDX55-210ENST00000543016 CCDC84Q86UT8 332 aaPredicted RBP14.3□□□□□ -0.12
DDX55-210ENST00000543016 DNAJC5GQ8N7S2 189 aa14.3□□□□□ -0.12
DDX55-210ENST00000543016 ENAHQ8N8S7 591 aaPredicted RBP14.3□□□□□ -0.12
DDX55-210ENST00000543016 ACER1Q8TDN7 264 aa14.3□□□□□ -0.12
DDX55-210ENST00000543016 ZSWIM6Q9HCJ5 1215 aa14.3□□□□□ -0.12
DDX55-210ENST00000543016 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.3□□□□□ -0.12
DDX55-210ENST00000543016 TNKSO95271 1327 aa14.3□□□□□ -0.12
DDX55-210ENST00000543016 F5H6K3 240 aa14.29□□□□□ -0.12
DDX55-210ENST00000543016 WDR46O15213 610 aaKnown RBP14.29□□□□□ -0.12
DDX55-210ENST00000543016 HOXA7P31268 230 aaPredicted RBP14.29□□□□□ -0.12
DDX55-210ENST00000543016 HMGCS2P54868 508 aa14.29□□□□□ -0.12
DDX55-210ENST00000543016 MAP2K1Q02750 393 aaPredicted RBP14.29□□□□□ -0.12
DDX55-210ENST00000543016 KLRC3Q07444 240 aa14.29□□□□□ -0.12
DDX55-210ENST00000543016 GRM1Q13255 1194 aa14.29□□□□□ -0.12
DDX55-210ENST00000543016 WTAPQ15007 396 aa14.29□□□□□ -0.12
DDX55-210ENST00000543016 SEC23AQ15436 765 aa14.29□□□□□ -0.12
DDX55-210ENST00000543016 ADCK5Q3MIX3 580 aa14.29□□□□□ -0.12
DDX55-210ENST00000543016 TMEM67Q5HYA8 995 aa14.29□□□□□ -0.12
DDX55-210ENST00000543016 IFIT1BQ5T764 474 aaKnown RBP14.29□□□□□ -0.12
DDX55-210ENST00000543016 IGDCC4Q8TDY8 1250 aa14.29□□□□□ -0.12
DDX55-210ENST00000543016 BRI3BPQ8WY22 251 aa14.29□□□□□ -0.12
DDX55-210ENST00000543016 TMEM47Q9BQJ4 181 aa14.29□□□□□ -0.12
DDX55-210ENST00000543016 KAT14Q9H8E8 782 aa14.29□□□□□ -0.12
DDX55-210ENST00000543016 EMILIN3Q9NT22 766 aa14.29□□□□□ -0.12
DDX55-210ENST00000543016 PNMA3Q9UL41 463 aa14.29□□□□□ -0.12
DDX55-210ENST00000543016 AGTPBP1Q9UPW5 1226 aa14.29□□□□□ -0.12
DDX55-210ENST00000543016 CYP46A1Q9Y6A2 500 aa14.29□□□□□ -0.12
DDX55-210ENST00000543016 NMT2O60551 498 aa14.28□□□□□ -0.12
DDX55-210ENST00000543016 CASTP20810 708 aaKnown RBP14.28□□□□□ -0.12
DDX55-210ENST00000543016 RPS6KB1P23443 525 aa14.28□□□□□ -0.12
DDX55-210ENST00000543016 ANTXR2P58335 489 aa14.28□□□□□ -0.12
DDX55-210ENST00000543016 MKRN3Q13064 507 aaKnown RBP14.28□□□□□ -0.12
DDX55-210ENST00000543016 MOGSQ13724 837 aa14.28□□□□□ -0.12
DDX55-210ENST00000543016 RUFY3Q7L099 469 aa14.28□□□□□ -0.12
DDX55-210ENST00000543016 IFNL1Q8IU54 200 aa14.28□□□□□ -0.12
DDX55-210ENST00000543016 PHIPQ8WWQ0 1821 aa14.28□□□□□ -0.12
DDX55-210ENST00000543016 GMCL1Q96IK5 515 aa14.28□□□□□ -0.12
DDX55-210ENST00000543016 ZKSCAN3Q9BRR0 538 aa14.28□□□□□ -0.12
DDX55-210ENST00000543016 USP17L15C9J2P7 530 aa14.27□□□□□ -0.13
DDX55-210ENST00000543016 USP17L13C9JLJ4 530 aa14.27□□□□□ -0.13
DDX55-210ENST00000543016 USP17L11C9JVI0 530 aa14.27□□□□□ -0.13
DDX55-210ENST00000543016 USP17L18D6R9N7 530 aa14.27□□□□□ -0.13
DDX55-210ENST00000543016 USP17L22D6RA61 530 aa14.27□□□□□ -0.13
DDX55-210ENST00000543016 USP17L17D6RBQ6 530 aa14.27□□□□□ -0.13
DDX55-210ENST00000543016 USP17L19D6RCP7 530 aa14.27□□□□□ -0.13
DDX55-210ENST00000543016 USP17L20D6RJB6 530 aa14.27□□□□□ -0.13
DDX55-210ENST00000543016 SH2B2O14492 632 aaPredicted RBP14.27□□□□□ -0.13
DDX55-210ENST00000543016 CA12O43570 354 aa14.27□□□□□ -0.13
DDX55-210ENST00000543016 AOC2O75106 756 aa14.27□□□□□ -0.13
DDX55-210ENST00000543016 VCAM1P19320 739 aa14.27□□□□□ -0.13
DDX55-210ENST00000543016 OSBPP22059 807 aa14.27□□□□□ -0.13
DDX55-210ENST00000543016 FGD1P98174 961 aa14.27□□□□□ -0.13
DDX55-210ENST00000543016 USP17L24Q0WX57 530 aa14.27□□□□□ -0.13
DDX55-210ENST00000543016 SLFN13Q68D06 897 aa14.27□□□□□ -0.13
DDX55-210ENST00000543016 GADL1Q6ZQY3 521 aa14.27□□□□□ -0.13
DDX55-210ENST00000543016 SGMS1Q86VZ5 419 aa14.27□□□□□ -0.13
DDX55-210ENST00000543016 CLEC10AQ8IUN9 316 aa14.27□□□□□ -0.13
DDX55-210ENST00000543016 PNMA1Q8ND90 353 aa14.27□□□□□ -0.13
DDX55-210ENST00000543016 NKX2-3Q8TAU0 364 aa14.27□□□□□ -0.13
DDX55-210ENST00000543016 GTF3C2Q8WUA4 911 aaPredicted RBP14.27□□□□□ -0.13
DDX55-210ENST00000543016 DCAF4Q8WV16 495 aa14.27□□□□□ -0.13
DDX55-210ENST00000543016 MAP3K14Q99558 947 aa14.27□□□□□ -0.13
DDX55-210ENST00000543016 ALDH8A1Q9H2A2 487 aaPredicted RBP14.27□□□□□ -0.13
DDX55-210ENST00000543016 MYPNQ86TC9 1320 aa14.26□□□□□ -0.13
DDX55-210ENST00000543016 BTBD19C9JJ37 291 aa14.26□□□□□ -0.13
DDX55-210ENST00000543016 PLA2G6O60733 806 aa14.26□□□□□ -0.13
DDX55-210ENST00000543016 NDUFB10O96000 172 aa14.26□□□□□ -0.13
DDX55-210ENST00000543016 CALM1P0DP23 149 aa14.26□□□□□ -0.13
DDX55-210ENST00000543016 CALM2P0DP24 149 aa14.26□□□□□ -0.13
DDX55-210ENST00000543016 CALM3P0DP25 149 aa14.26□□□□□ -0.13
DDX55-210ENST00000543016 SLC1A4P43007 532 aa14.26□□□□□ -0.13
DDX55-210ENST00000543016 RCAN1P53805 252 aa14.26□□□□□ -0.13
DDX55-210ENST00000543016 ANKRD1Q15327 319 aa14.26□□□□□ -0.13
DDX55-210ENST00000543016 GPATCH4Q5T3I0 446 aaKnown RBP14.26□□□□□ -0.13
DDX55-210ENST00000543016 GPAT2Q6NUI2 795 aa14.26□□□□□ -0.13
DDX55-210ENST00000543016 SYNE3Q6ZMZ3 975 aa14.26□□□□□ -0.13
DDX55-210ENST00000543016 CATIPQ7Z7H3 387 aa14.26□□□□□ -0.13
DDX55-210ENST00000543016 LRRC47Q8N1G4 583 aaKnown RBP14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms