RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 RUFY3Q7L099 469 aa20.12■□□□□ 0.81
LIG1-204ENST00000542460 PRRT2Q7Z6L0 340 aaPredicted RBP20.12■□□□□ 0.81
LIG1-204ENST00000542460 IGDCC4Q8TDY8 1250 aa20.12■□□□□ 0.81
LIG1-204ENST00000542460 MS4A4AQ96JQ5 239 aa20.12■□□□□ 0.81
LIG1-204ENST00000542460 TBC1D32Q96NH3 1257 aa20.12■□□□□ 0.81
LIG1-204ENST00000542460 TMEM47Q9BQJ4 181 aa20.12■□□□□ 0.81
LIG1-204ENST00000542460 CYP46A1Q9Y6A2 500 aa20.12■□□□□ 0.81
LIG1-204ENST00000542460 WDR33Q9C0J8 1336 aaKnown RBP20.11■□□□□ 0.81
LIG1-204ENST00000542460 CETPP11597 493 aa20.11■□□□□ 0.81
LIG1-204ENST00000542460 CPA1P15085 419 aa20.11■□□□□ 0.81
LIG1-204ENST00000542460 HMGCS2P54868 508 aa20.11■□□□□ 0.81
LIG1-204ENST00000542460 IFIT1BQ5T764 474 aaKnown RBP20.11■□□□□ 0.81
LIG1-204ENST00000542460 USP17L2Q6R6M4 530 aa20.11■□□□□ 0.81
LIG1-204ENST00000542460 GOPCQ9HD26 462 aa20.11■□□□□ 0.81
LIG1-204ENST00000542460 TMOD4Q9NZQ9 345 aa20.11■□□□□ 0.81
LIG1-204ENST00000542460 INHBEP58166 350 aa20.1■□□□□ 0.81
LIG1-204ENST00000542460 WTAPQ15007 396 aa20.1■□□□□ 0.81
LIG1-204ENST00000542460 ZYXQ15942 572 aaKnown RBP20.1■□□□□ 0.81
LIG1-204ENST00000542460 FASTKD5Q7L8L6 764 aaKnown RBP20.1■□□□□ 0.81
LIG1-204ENST00000542460 TMTC2Q8N394 836 aa20.1■□□□□ 0.81
LIG1-204ENST00000542460 UPF3BQ9BZI7 483 aaKnown RBP20.1■□□□□ 0.81
LIG1-204ENST00000542460 VCPKMTQ9H867 229 aa20.1■□□□□ 0.81
LIG1-204ENST00000542460 KAT14Q9H8E8 782 aa20.1■□□□□ 0.81
LIG1-204ENST00000542460 EMILIN3Q9NT22 766 aa20.1■□□□□ 0.81
LIG1-204ENST00000542460 CCL15-CCL14A0A0B4J2E2 113 aa20.09■□□□□ 0.81
LIG1-204ENST00000542460 SH2B2O14492 632 aaPredicted RBP20.09■□□□□ 0.81
LIG1-204ENST00000542460 LIFRP42702 1097 aa20.09■□□□□ 0.81
LIG1-204ENST00000542460 KIF23Q02241 960 aaPredicted RBP20.09■□□□□ 0.81
LIG1-204ENST00000542460 CCL15Q16663 113 aa20.09■□□□□ 0.81
LIG1-204ENST00000542460 LRRC47Q8N1G4 583 aaKnown RBP20.09■□□□□ 0.81
LIG1-204ENST00000542460 PROCA1Q8NCQ7 364 aaPredicted RBP20.09■□□□□ 0.81
LIG1-204ENST00000542460 GMCL1P1Q8NEA9 526 aa20.09■□□□□ 0.81
LIG1-204ENST00000542460 C12orf42Q96LP6 360 aa20.09■□□□□ 0.81
LIG1-204ENST00000542460 TCEANC2Q96MN5 208 aa20.09■□□□□ 0.81
LIG1-204ENST00000542460 LRRC2Q9BYS8 371 aa20.09■□□□□ 0.81
LIG1-204ENST00000542460 TESPA1A2RU30 521 aaPredicted RBP20.08■□□□□ 0.81
LIG1-204ENST00000542460 F5H6K3 240 aa20.08■□□□□ 0.81
LIG1-204ENST00000542460 MAP2K2P36507 400 aa20.08■□□□□ 0.81
LIG1-204ENST00000542460 FGD1P98174 961 aa20.08■□□□□ 0.81
LIG1-204ENST00000542460 KLRC3Q07444 240 aa20.08■□□□□ 0.81
LIG1-204ENST00000542460 SREBF2Q12772 1141 aa20.08■□□□□ 0.81
LIG1-204ENST00000542460 REM2Q8IYK8 340 aaPredicted RBP20.08■□□□□ 0.81
LIG1-204ENST00000542460 FBXL16Q8N461 479 aa20.08■□□□□ 0.81
LIG1-204ENST00000542460 LPAR1Q92633 364 aa20.08■□□□□ 0.81
LIG1-204ENST00000542460 KIF2CQ99661 725 aa20.08■□□□□ 0.81
LIG1-204ENST00000542460 LY9Q9HBG7 655 aa20.08■□□□□ 0.81
LIG1-204ENST00000542460 PHIPQ8WWQ0 1821 aa20.08■□□□□ 0.81
LIG1-204ENST00000542460 AOC2O75106 756 aa20.07■□□□□ 0.8
LIG1-204ENST00000542460 MOGSQ13724 837 aa20.07■□□□□ 0.8
LIG1-204ENST00000542460 COL13A1Q5TAT6 717 aaPredicted RBP20.07■□□□□ 0.8
LIG1-204ENST00000542460 GADL1Q6ZQY3 521 aa20.07■□□□□ 0.8
LIG1-204ENST00000542460 PNMA1Q8ND90 353 aa20.07■□□□□ 0.8
LIG1-204ENST00000542460 BRI3BPQ8WY22 251 aa20.07■□□□□ 0.8
LIG1-204ENST00000542460 ZIC5Q96T25 663 aa20.07■□□□□ 0.8
LIG1-204ENST00000542460 RAD21O60216 631 aa20.07■□□□□ 0.8
LIG1-204ENST00000542460 TM4SF4P48230 202 aa20.07■□□□□ 0.8
LIG1-204ENST00000542460 DGKZQ13574 1117 aa20.07■□□□□ 0.8
LIG1-204ENST00000542460 Q6ZUG5 572 aa20.07■□□□□ 0.8
LIG1-204ENST00000542460 SENP2Q9HC62 589 aa20.07■□□□□ 0.8
LIG1-204ENST00000542460 GPHNQ9NQX3 736 aaPredicted RBP20.07■□□□□ 0.8
LIG1-204ENST00000542460 PDRG1Q9NUG6 133 aa20.07■□□□□ 0.8
LIG1-204ENST00000542460 CCDC69A6NI79 296 aa20.06■□□□□ 0.8
LIG1-204ENST00000542460 KIAA1755Q5JYT7 1200 aa20.06■□□□□ 0.8
LIG1-204ENST00000542460 SLFN13Q68D06 897 aa20.06■□□□□ 0.8
LIG1-204ENST00000542460 NFXL1Q6ZNB6 911 aa20.06■□□□□ 0.8
LIG1-204ENST00000542460 SGMS1Q86VZ5 419 aa20.06■□□□□ 0.8
LIG1-204ENST00000542460 SPICE1Q8N0Z3 855 aa20.06■□□□□ 0.8
LIG1-204ENST00000542460 AGXT2Q9BYV1 514 aa20.06■□□□□ 0.8
LIG1-204ENST00000542460 NDUFB10O96000 172 aa20.05■□□□□ 0.8
LIG1-204ENST00000542460 VCAM1P19320 739 aa20.05■□□□□ 0.8
LIG1-204ENST00000542460 NEK4P51957 841 aa20.05■□□□□ 0.8
LIG1-204ENST00000542460 ANKRD23Q86SG2 305 aa20.05■□□□□ 0.8
LIG1-204ENST00000542460 PTPN18Q99952 460 aa20.05■□□□□ 0.8
LIG1-204ENST00000542460 ALDH8A1Q9H2A2 487 aaPredicted RBP20.05■□□□□ 0.8
LIG1-204ENST00000542460 AGTPBP1Q9UPW5 1226 aa20.05■□□□□ 0.8
LIG1-204ENST00000542460 WDR46O15213 610 aaKnown RBP20.04■□□□□ 0.8
LIG1-204ENST00000542460 PABPC4Q13310 644 aaKnown RBP eCLIP20.04■□□□□ 0.8
LIG1-204ENST00000542460 TREML2Q5T2D2 321 aa20.04■□□□□ 0.8
LIG1-204ENST00000542460 OTUD7BQ6GQQ9 843 aa20.04■□□□□ 0.8
LIG1-204ENST00000542460 GPAT2Q6NUI2 795 aa20.04■□□□□ 0.8
LIG1-204ENST00000542460 CATIPQ7Z7H3 387 aa20.04■□□□□ 0.8
LIG1-204ENST00000542460 BRF1Q92994 677 aa20.04■□□□□ 0.8
LIG1-204ENST00000542460 GMCL1Q96IK5 515 aa20.04■□□□□ 0.8
LIG1-204ENST00000542460 BTBD19C9JJ37 291 aa20.03■□□□□ 0.8
LIG1-204ENST00000542460 SLC1A4P43007 532 aa20.03■□□□□ 0.8
LIG1-204ENST00000542460 RABEP1Q15276 862 aa20.03■□□□□ 0.8
LIG1-204ENST00000542460 IL27Q8NEV9 243 aa20.03■□□□□ 0.8
LIG1-204ENST00000542460 DCAF4Q8WV16 495 aa20.03■□□□□ 0.8
LIG1-204ENST00000542460 MTMR7Q9Y216 660 aa20.03■□□□□ 0.8
LIG1-204ENST00000542460 SLC45A1Q9Y2W3 748 aa20.03■□□□□ 0.8
LIG1-204ENST00000542460 SLC12A7Q9Y666 1083 aa20.03■□□□□ 0.8
LIG1-204ENST00000542460 USP17L15C9J2P7 530 aa20.02■□□□□ 0.8
LIG1-204ENST00000542460 USP17L13C9JLJ4 530 aa20.02■□□□□ 0.8
LIG1-204ENST00000542460 USP17L11C9JVI0 530 aa20.02■□□□□ 0.8
LIG1-204ENST00000542460 USP17L18D6R9N7 530 aa20.02■□□□□ 0.8
LIG1-204ENST00000542460 USP17L22D6RA61 530 aa20.02■□□□□ 0.8
LIG1-204ENST00000542460 USP17L17D6RBQ6 530 aa20.02■□□□□ 0.8
LIG1-204ENST00000542460 USP17L19D6RCP7 530 aa20.02■□□□□ 0.8
LIG1-204ENST00000542460 USP17L20D6RJB6 530 aa20.02■□□□□ 0.8
LIG1-204ENST00000542460 SNHG28P0DPA3 235 aa20.02■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms