RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-210ENST00000541488 PPP1R13LQ8WUF5 828 aa6.9□□□□□ -1.3
PRKDC-210ENST00000541488 Q96M66 194 aa6.9□□□□□ -1.3
PRKDC-210ENST00000541488 CEP131Q9UPN4 1083 aa6.9□□□□□ -1.3
PRKDC-210ENST00000541488 ETV3P41162 512 aa6.89□□□□□ -1.31
PRKDC-210ENST00000541488 YARSP54577 528 aaKnown RBP6.89□□□□□ -1.31
PRKDC-210ENST00000541488 MRPL58Q14197 206 aaKnown RBP6.89□□□□□ -1.31
PRKDC-210ENST00000541488 ERMP1Q7Z2K6 904 aa6.89□□□□□ -1.31
PRKDC-210ENST00000541488 REC114Q7Z4M0 266 aa6.89□□□□□ -1.31
PRKDC-210ENST00000541488 TMEM87AQ8NBN3 555 aa6.89□□□□□ -1.31
PRKDC-210ENST00000541488 CYB5D2Q8WUJ1 264 aa6.89□□□□□ -1.31
PRKDC-210ENST00000541488 EIF4A3P38919 411 aaKnown RBP6.88□□□□□ -1.31
PRKDC-210ENST00000541488 AFMP43652 599 aa6.88□□□□□ -1.31
PRKDC-210ENST00000541488 MPP2Q14168 576 aa6.88□□□□□ -1.31
PRKDC-210ENST00000541488 FAM196AQ6ZSG2 479 aa6.88□□□□□ -1.31
PRKDC-210ENST00000541488 C22orf34Q6ZV56 151 aa6.88□□□□□ -1.31
PRKDC-210ENST00000541488 DIRC2Q96SL1 478 aa6.88□□□□□ -1.31
PRKDC-210ENST00000541488 KIF2CQ99661 725 aa6.88□□□□□ -1.31
PRKDC-210ENST00000541488 BRMS1Q9HCU9 246 aa6.88□□□□□ -1.31
PRKDC-210ENST00000541488 TMEM253P0C7T8 217 aa6.87□□□□□ -1.31
PRKDC-210ENST00000541488 ZNF16P17020 682 aaPredicted RBP6.87□□□□□ -1.31
PRKDC-210ENST00000541488 ITGAEP38570 1179 aa6.87□□□□□ -1.31
PRKDC-210ENST00000541488 KIR3DL1P43629 444 aa6.87□□□□□ -1.31
PRKDC-210ENST00000541488 MFAP1P55081 439 aaKnown RBP6.87□□□□□ -1.31
PRKDC-210ENST00000541488 TMEM201Q5SNT2 666 aa6.87□□□□□ -1.31
PRKDC-210ENST00000541488 ATG14Q6ZNE5 492 aa6.87□□□□□ -1.31
PRKDC-210ENST00000541488 HS2ST1Q7LGA3 356 aa6.87□□□□□ -1.31
PRKDC-210ENST00000541488 GGNQ86UU5 652 aa6.87□□□□□ -1.31
PRKDC-210ENST00000541488 CREG2Q8IUH2 290 aa6.87□□□□□ -1.31
PRKDC-210ENST00000541488 ZNF296Q8WUU4 475 aaPredicted RBP6.87□□□□□ -1.31
PRKDC-210ENST00000541488 NSUN3Q9H649 340 aaKnown RBP6.87□□□□□ -1.31
PRKDC-210ENST00000541488 PARD6AQ9NPB6 346 aa6.87□□□□□ -1.31
PRKDC-210ENST00000541488 UBP1Q9NZI7 540 aa6.87□□□□□ -1.31
PRKDC-210ENST00000541488 SLAMF8Q9P0V8 285 aa6.87□□□□□ -1.31
PRKDC-210ENST00000541488 SUPT16HQ9Y5B9 1047 aaKnown RBP6.87□□□□□ -1.31
PRKDC-210ENST00000541488 PCDHB14Q9Y5E9 798 aa6.87□□□□□ -1.31
PRKDC-210ENST00000541488 A0A0G2JLL6 359 aaPredicted RBP6.86□□□□□ -1.31
PRKDC-210ENST00000541488 TPP2P29144 1249 aaPredicted RBP6.86□□□□□ -1.31
PRKDC-210ENST00000541488 CRKP46108 304 aa6.86□□□□□ -1.31
PRKDC-210ENST00000541488 CWF19L2Q2TBE0 894 aaKnown RBP6.86□□□□□ -1.31
PRKDC-210ENST00000541488 KIRREL1Q96J84 757 aa6.86□□□□□ -1.31
PRKDC-210ENST00000541488 KCNK12Q9HB15 430 aa6.86□□□□□ -1.31
PRKDC-210ENST00000541488 ADAMTS1Q9UHI8 967 aa6.86□□□□□ -1.31
PRKDC-210ENST00000541488 DNAJC25-GNG10A0A024R161 153 aa6.85□□□□□ -1.31
PRKDC-210ENST00000541488 NUAK1O60285 661 aa6.85□□□□□ -1.31
PRKDC-210ENST00000541488 PSPNO60542 156 aa6.85□□□□□ -1.31
PRKDC-210ENST00000541488 GBP1P32455 592 aa6.85□□□□□ -1.31
PRKDC-210ENST00000541488 MCM4P33991 863 aa6.85□□□□□ -1.31
PRKDC-210ENST00000541488 CHMP4BP1P59074 171 aa6.85□□□□□ -1.31
PRKDC-210ENST00000541488 KRTAP1-1Q07627 177 aa6.85□□□□□ -1.31
PRKDC-210ENST00000541488 SEZ6Q53EL9 994 aa6.85□□□□□ -1.31
PRKDC-210ENST00000541488 ARSHQ5FYA8 562 aa6.85□□□□□ -1.31
PRKDC-210ENST00000541488 TMEM67Q5HYA8 995 aa6.85□□□□□ -1.31
PRKDC-210ENST00000541488 RALGPS1Q5JS13 557 aa6.85□□□□□ -1.31
PRKDC-210ENST00000541488 GK5Q6ZS86 529 aa6.85□□□□□ -1.31
PRKDC-210ENST00000541488 THAP5Q7Z6K1 395 aa6.85□□□□□ -1.31
PRKDC-210ENST00000541488 DTWD2Q8NBA8 298 aa6.85□□□□□ -1.31
PRKDC-210ENST00000541488 CCDC74BQ96LY2 380 aa6.85□□□□□ -1.31
PRKDC-210ENST00000541488 PRR36Q9H6K5 1346 aa6.84□□□□□ -1.31
PRKDC-210ENST00000541488 TCAF2A6NFQ2 919 aa6.84□□□□□ -1.31
PRKDC-210ENST00000541488 ESR1P03372 595 aa6.84□□□□□ -1.31
PRKDC-210ENST00000541488 POLR2BP30876 1174 aaKnown RBP6.84□□□□□ -1.31
PRKDC-210ENST00000541488 HK2P52789 917 aa6.84□□□□□ -1.31
PRKDC-210ENST00000541488 TTC6Q86TZ1 520 aa6.84□□□□□ -1.31
PRKDC-210ENST00000541488 SLFN12Q8IYM2 578 aa6.84□□□□□ -1.31
PRKDC-210ENST00000541488 COX4I2Q96KJ9 171 aa6.84□□□□□ -1.31
PRKDC-210ENST00000541488 KREMEN1Q96MU8 473 aa6.84□□□□□ -1.31
PRKDC-210ENST00000541488 ALPK1Q96QP1 1244 aa6.84□□□□□ -1.31
PRKDC-210ENST00000541488 BCL11AQ9H165 835 aa6.84□□□□□ -1.31
PRKDC-210ENST00000541488 DUSP15Q9H1R2 295 aaPredicted RBP6.84□□□□□ -1.31
PRKDC-210ENST00000541488 C19orf73Q9NVV2 129 aa6.84□□□□□ -1.31
PRKDC-210ENST00000541488 MED14OSP0DP75 135 aa6.83□□□□□ -1.32
PRKDC-210ENST00000541488 RAG1P15918 1043 aa6.83□□□□□ -1.32
PRKDC-210ENST00000541488 ERVFC1P60507 584 aa6.83□□□□□ -1.32
PRKDC-210ENST00000541488 CLCQ05315 142 aa6.83□□□□□ -1.32
PRKDC-210ENST00000541488 LDLRAD1Q5T700 205 aa6.83□□□□□ -1.32
PRKDC-210ENST00000541488 PIWIL2Q8TC59 973 aaKnown RBP6.83□□□□□ -1.32
PRKDC-210ENST00000541488 BACH2Q9BYV9 841 aa6.83□□□□□ -1.32
PRKDC-210ENST00000541488 GPATCH2Q9NW75 528 aa6.83□□□□□ -1.32
PRKDC-210ENST00000541488 DUSP13Q9UII6 198 aa6.83□□□□□ -1.32
PRKDC-210ENST00000541488 KCNH3Q9ULD8 1083 aa6.83□□□□□ -1.32
PRKDC-210ENST00000541488 SHISA3A0PJX4 238 aa6.82□□□□□ -1.32
PRKDC-210ENST00000541488 SLC22A31A6NKX4 558 aa6.82□□□□□ -1.32
PRKDC-210ENST00000541488 GREM1O60565 184 aa6.82□□□□□ -1.32
PRKDC-210ENST00000541488 SYN1P17600 705 aa6.82□□□□□ -1.32
PRKDC-210ENST00000541488 LTKP29376 864 aa6.82□□□□□ -1.32
PRKDC-210ENST00000541488 LINC00310P59036 64 aa6.82□□□□□ -1.32
PRKDC-210ENST00000541488 APOBRQ0VD83 1088 aa6.82□□□□□ -1.32
PRKDC-210ENST00000541488 OVOS1Q6IE37 1185 aa6.82□□□□□ -1.32
PRKDC-210ENST00000541488 HOMEZQ8IX15 550 aa6.82□□□□□ -1.32
PRKDC-210ENST00000541488 RNF141Q8WVD5 230 aa6.82□□□□□ -1.32
PRKDC-210ENST00000541488 ADAMTS10Q9H324 1103 aa6.82□□□□□ -1.32
PRKDC-210ENST00000541488 TRIT1Q9H3H1 467 aaKnown RBP6.82□□□□□ -1.32
PRKDC-210ENST00000541488 TMPRSS5Q9H3S3 457 aa6.82□□□□□ -1.32
PRKDC-210ENST00000541488 ANTXR1Q9H6X2 564 aa6.82□□□□□ -1.32
PRKDC-210ENST00000541488 SMG5Q9UPR3 1016 aaKnown RBP6.82□□□□□ -1.32
PRKDC-210ENST00000541488 PCDHGB7Q9Y5F8 929 aa6.82□□□□□ -1.32
PRKDC-210ENST00000541488 FAM86C2PA6NEL3 165 aa6.81□□□□□ -1.32
PRKDC-210ENST00000541488 EGR3Q06889 387 aa6.81□□□□□ -1.32
PRKDC-210ENST00000541488 MLECQ14165 292 aa6.81□□□□□ -1.32
PRKDC-210ENST00000541488 ZNF394Q53GI3 561 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 539.9 ms