RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 USP17L13C9JLJ4 530 aa15.17■□□□□ 0.02
CLSTN3-208ENST00000538933 USP17L11C9JVI0 530 aa15.17■□□□□ 0.02
CLSTN3-208ENST00000538933 USP17L18D6R9N7 530 aa15.17■□□□□ 0.02
CLSTN3-208ENST00000538933 USP17L22D6RA61 530 aa15.17■□□□□ 0.02
CLSTN3-208ENST00000538933 USP17L17D6RBQ6 530 aa15.17■□□□□ 0.02
CLSTN3-208ENST00000538933 USP17L19D6RCP7 530 aa15.17■□□□□ 0.02
CLSTN3-208ENST00000538933 USP17L20D6RJB6 530 aa15.17■□□□□ 0.02
CLSTN3-208ENST00000538933 SEPT4O43236 478 aa15.17■□□□□ 0.02
CLSTN3-208ENST00000538933 GDF11O95390 407 aa15.17■□□□□ 0.02
CLSTN3-208ENST00000538933 GSTO1P78417 241 aa15.17■□□□□ 0.02
CLSTN3-208ENST00000538933 USP17L24Q0WX57 530 aa15.17■□□□□ 0.02
CLSTN3-208ENST00000538933 MTX1Q13505 466 aa15.17■□□□□ 0.02
CLSTN3-208ENST00000538933 LRRC41Q15345 812 aa15.17■□□□□ 0.02
CLSTN3-208ENST00000538933 OLFML2BQ68BL8 750 aa15.17■□□□□ 0.02
CLSTN3-208ENST00000538933 PI16Q6UXB8 463 aa15.17■□□□□ 0.02
CLSTN3-208ENST00000538933 CATSPERGQ6ZRH7 1159 aa15.17■□□□□ 0.02
CLSTN3-208ENST00000538933 XAGE2Q96GT9 111 aa15.17■□□□□ 0.02
CLSTN3-208ENST00000538933 COPRSQ9NQ92 184 aa15.17■□□□□ 0.02
CLSTN3-208ENST00000538933 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.17■□□□□ 0.02
CLSTN3-208ENST00000538933 SURF6O75683 361 aaKnown RBP15.16■□□□□ 0.02
CLSTN3-208ENST00000538933 G3BP1Q13283 466 aaKnown RBP eCLIP15.16■□□□□ 0.02
CLSTN3-208ENST00000538933 HSP90AB4PQ58FF6 505 aa15.16■□□□□ 0.02
CLSTN3-208ENST00000538933 CENPQQ7L2Z9 268 aaPredicted RBP15.16■□□□□ 0.02
CLSTN3-208ENST00000538933 SSH3Q8TE77 659 aa15.16■□□□□ 0.02
CLSTN3-208ENST00000538933 UHRF1Q96T88 793 aaPredicted RBP15.16■□□□□ 0.02
CLSTN3-208ENST00000538933 CWC22Q9HCG8 908 aaKnown RBP15.16■□□□□ 0.02
CLSTN3-208ENST00000538933 THEGQ9P2T0 379 aa15.16■□□□□ 0.02
CLSTN3-208ENST00000538933 MYO5AQ9Y4I1 1855 aaKnown RBP15.16■□□□□ 0.02
CLSTN3-208ENST00000538933 A0A1B0GUL7 405 aa15.15■□□□□ 0.02
CLSTN3-208ENST00000538933 CLTBP09497 229 aa15.15■□□□□ 0.02
CLSTN3-208ENST00000538933 MRPS5P82675 430 aaKnown RBP15.15■□□□□ 0.02
CLSTN3-208ENST00000538933 POLA2Q14181 598 aa15.15■□□□□ 0.02
CLSTN3-208ENST00000538933 ADGRE1Q14246 886 aa15.15■□□□□ 0.02
CLSTN3-208ENST00000538933 PRAMEF19Q5SWL8 479 aa15.15■□□□□ 0.02
CLSTN3-208ENST00000538933 WDR78Q5VTH9 848 aa15.15■□□□□ 0.02
CLSTN3-208ENST00000538933 SIRT2Q8IXJ6 389 aa15.15■□□□□ 0.02
CLSTN3-208ENST00000538933 PPM1EQ8WY54 764 aa15.15■□□□□ 0.02
CLSTN3-208ENST00000538933 TIFAQ96CG3 184 aa15.15■□□□□ 0.02
CLSTN3-208ENST00000538933 PHF24Q9UPV7 400 aa15.15■□□□□ 0.02
CLSTN3-208ENST00000538933 ARIH1Q9Y4X5 557 aaPredicted RBP15.15■□□□□ 0.02
CLSTN3-208ENST00000538933 APBB1O00213 710 aa15.14■□□□□ 0.01
CLSTN3-208ENST00000538933 COBLO75128 1261 aa15.14■□□□□ 0.01
CLSTN3-208ENST00000538933 IGHDP01880 384 aa15.14■□□□□ 0.01
CLSTN3-208ENST00000538933 PPP4CP60510 307 aa15.14■□□□□ 0.01
CLSTN3-208ENST00000538933 FPGSQ05932 587 aa15.14■□□□□ 0.01
CLSTN3-208ENST00000538933 C16orf59Q7L2K0 433 aa15.14■□□□□ 0.01
CLSTN3-208ENST00000538933 SPATA5Q8NB90 893 aa15.14■□□□□ 0.01
CLSTN3-208ENST00000538933 BCL11AQ9H165 835 aa15.14■□□□□ 0.01
CLSTN3-208ENST00000538933 PALD1Q9ULE6 856 aa15.14■□□□□ 0.01
CLSTN3-208ENST00000538933 IVNS1ABPQ9Y6Y0 642 aa15.14■□□□□ 0.01
CLSTN3-208ENST00000538933 SPDYE16A6NNV3 312 aaPredicted RBP15.13■□□□□ 0.01
CLSTN3-208ENST00000538933 BMP1P13497 986 aa15.13■□□□□ 0.01
CLSTN3-208ENST00000538933 RAG1P15918 1043 aa15.13■□□□□ 0.01
CLSTN3-208ENST00000538933 ADORA2AP29274 412 aa15.13■□□□□ 0.01
CLSTN3-208ENST00000538933 PBX2P40425 430 aa15.13■□□□□ 0.01
CLSTN3-208ENST00000538933 FAM47AQ5JRC9 791 aa15.13■□□□□ 0.01
CLSTN3-208ENST00000538933 RASIP1Q5U651 963 aa15.13■□□□□ 0.01
CLSTN3-208ENST00000538933 DPP9Q86TI2 863 aa15.13■□□□□ 0.01
CLSTN3-208ENST00000538933 ERC1Q8IUD2 1116 aa15.13■□□□□ 0.01
CLSTN3-208ENST00000538933 MAPKAPK5Q8IW41 473 aa15.13■□□□□ 0.01
CLSTN3-208ENST00000538933 TGFBRAP1Q8WUH2 860 aa15.13■□□□□ 0.01
CLSTN3-208ENST00000538933 GBF1Q92538 1859 aa15.13■□□□□ 0.01
CLSTN3-208ENST00000538933 PRDM12Q9H4Q4 367 aa15.13■□□□□ 0.01
CLSTN3-208ENST00000538933 RAI14Q9P0K7 980 aa15.13■□□□□ 0.01
CLSTN3-208ENST00000538933 EXOC6BQ9Y2D4 811 aa15.13■□□□□ 0.01
CLSTN3-208ENST00000538933 MYH1P12882 1939 aa15.13■□□□□ 0.01
CLSTN3-208ENST00000538933 FLT1P17948 1338 aa15.13■□□□□ 0.01
CLSTN3-208ENST00000538933 MUC6Q6W4X9 2439 aa15.12■□□□□ 0.01
CLSTN3-208ENST00000538933 STRNO43815 780 aa15.12■□□□□ 0.01
CLSTN3-208ENST00000538933 GH2P01242 217 aa15.12■□□□□ 0.01
CLSTN3-208ENST00000538933 MYCNP04198 464 aaPredicted RBP15.12■□□□□ 0.01
CLSTN3-208ENST00000538933 VCAM1P19320 739 aa15.12■□□□□ 0.01
CLSTN3-208ENST00000538933 FAAP100Q0VG06 881 aa15.12■□□□□ 0.01
CLSTN3-208ENST00000538933 TFCP2Q12800 502 aa15.12■□□□□ 0.01
CLSTN3-208ENST00000538933 ZYXQ15942 572 aaKnown RBP15.12■□□□□ 0.01
CLSTN3-208ENST00000538933 TATDN1Q6P1N9 297 aa15.12■□□□□ 0.01
CLSTN3-208ENST00000538933 ADGRA1Q86SQ6 560 aa15.12■□□□□ 0.01
CLSTN3-208ENST00000538933 ACER1Q8TDN7 264 aa15.12■□□□□ 0.01
CLSTN3-208ENST00000538933 NECAB3Q96P71 396 aaPredicted RBP15.12■□□□□ 0.01
CLSTN3-208ENST00000538933 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.12■□□□□ 0.011e-12■■■□□ 14.7
CLSTN3-208ENST00000538933 C1QTNF1Q9BXJ1 281 aa15.12■□□□□ 0.01
CLSTN3-208ENST00000538933 MOV10L1Q9BXT6 1211 aaKnown RBP15.12■□□□□ 0.01
CLSTN3-208ENST00000538933 PBX4Q9BYU1 374 aa15.12■□□□□ 0.01
CLSTN3-208ENST00000538933 KIAA1683Q9H0B3 1180 aa15.12■□□□□ 0.01
CLSTN3-208ENST00000538933 AATFQ9NY61 560 aaKnown RBP eCLIP15.12■□□□□ 0.01
CLSTN3-208ENST00000538933 A0A0G2JMZ2 1700 aa15.12■□□□□ 0.01
CLSTN3-208ENST00000538933 GRXCR1A8MXD5 290 aa15.11■□□□□ 0.01
CLSTN3-208ENST00000538933 RAB11FIP3O75154 756 aa15.11■□□□□ 0.01
CLSTN3-208ENST00000538933 ARID4AP29374 1257 aaPredicted RBP15.11■□□□□ 0.01
CLSTN3-208ENST00000538933 ANKRD33Q7Z3H0 272 aa15.11■□□□□ 0.01
CLSTN3-208ENST00000538933 CRACR2BQ8N4Y2 399 aaPredicted RBP15.11■□□□□ 0.01
CLSTN3-208ENST00000538933 GAS2L1Q99501 681 aaPredicted RBP15.11■□□□□ 0.01
CLSTN3-208ENST00000538933 DCTPP1Q9H773 170 aa15.11■□□□□ 0.01
CLSTN3-208ENST00000538933 MCAMP43121 646 aa15.1■□□□□ 0.01
CLSTN3-208ENST00000538933 CCDC85BQ15834 202 aaPredicted RBP15.1■□□□□ 0.01
CLSTN3-208ENST00000538933 ANKRD45Q5TZF3 282 aa15.1■□□□□ 0.01
CLSTN3-208ENST00000538933 TOX2Q96NM4 488 aa15.1■□□□□ 0.01
CLSTN3-208ENST00000538933 TMEM39AQ9NV64 488 aa15.1■□□□□ 0.01
CLSTN3-208ENST00000538933 AKAP2Q9Y2D5 859 aa15.1■□□□□ 0.01
CLSTN3-208ENST00000538933 WDFY4Q6ZS81 3184 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms