RNA–Protein interactions for RNA: ENST00000535493.5

HDAC4-214, Transcript of histone deacetylase 4, humanhuman

TSL 2

Gene HDAC4, Length 2,743 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-214ENST00000535493 UBXN1Q04323 297 aa15.15■□□□□ 0.02
HDAC4-214ENST00000535493 SART3Q15020 963 aaKnown RBP15.15■□□□□ 0.02
HDAC4-214ENST00000535493 ADGRA1Q86SQ6 560 aa15.15■□□□□ 0.02
HDAC4-214ENST00000535493 ABCF2Q9UG63 623 aa15.15■□□□□ 0.02
HDAC4-214ENST00000535493 DUSP10Q9Y6W6 482 aa15.15■□□□□ 0.02
HDAC4-214ENST00000535493 C1orf167Q5SNV9 1468 aa15.14■□□□□ 0.01
HDAC4-214ENST00000535493 AKAP11Q9UKA4 1901 aa15.14■□□□□ 0.01
HDAC4-214ENST00000535493 TNKSO95271 1327 aa15.14■□□□□ 0.01
HDAC4-214ENST00000535493 ATP1A1P05023 1023 aaKnown RBP15.14■□□□□ 0.01
HDAC4-214ENST00000535493 MCM7P33993 719 aa15.14■□□□□ 0.01
HDAC4-214ENST00000535493 SLC20A2Q08357 652 aa15.14■□□□□ 0.01
HDAC4-214ENST00000535493 PKN1Q16512 942 aa15.14■□□□□ 0.01
HDAC4-214ENST00000535493 LRRC31Q6UY01 552 aa15.14■□□□□ 0.01
HDAC4-214ENST00000535493 ZNF579Q8NAF0 562 aaKnown RBP15.14■□□□□ 0.01
HDAC4-214ENST00000535493 SRCAPQ6ZRS2 3230 aa15.14■□□□□ 0.01
HDAC4-214ENST00000535493 EIF3JO75822 258 aaKnown RBP15.14■□□□□ 0.01
HDAC4-214ENST00000535493 MAP3K12Q12852 859 aa15.14■□□□□ 0.01
HDAC4-214ENST00000535493 NAA15Q9BXJ9 866 aaKnown RBP15.14■□□□□ 0.01
HDAC4-214ENST00000535493 KRT23Q9C075 422 aa15.14■□□□□ 0.01
HDAC4-214ENST00000535493 CEP131Q9UPN4 1083 aa15.14■□□□□ 0.01
HDAC4-214ENST00000535493 GLI3P10071 1580 aa15.13■□□□□ 0.01
HDAC4-214ENST00000535493 TTC26A0AVF1 554 aa15.13■□□□□ 0.01
HDAC4-214ENST00000535493 RNF40O75150 1001 aa15.13■□□□□ 0.01
HDAC4-214ENST00000535493 MYBL2P10244 700 aa15.13■□□□□ 0.01
HDAC4-214ENST00000535493 COPB1P53618 953 aaKnown RBP15.13■□□□□ 0.01
HDAC4-214ENST00000535493 PRDM11Q9NQV5 511 aa15.13■□□□□ 0.01
HDAC4-214ENST00000535493 AATFQ9NY61 560 aaKnown RBP eCLIP15.13■□□□□ 0.01
HDAC4-214ENST00000535493 PSD3Q9NYI0 1048 aa15.13■□□□□ 0.01
HDAC4-214ENST00000535493 TTF2Q9UNY4 1162 aaKnown RBP15.13■□□□□ 0.01
HDAC4-214ENST00000535493 FER1L4A9Z1Z3 1794 aa15.13■□□□□ 0.01
HDAC4-214ENST00000535493 NMT2O60551 498 aa15.13■□□□□ 0.01
HDAC4-214ENST00000535493 ATF3P18847 181 aa15.13■□□□□ 0.01
HDAC4-214ENST00000535493 SH3RF1Q7Z6J0 888 aa15.13■□□□□ 0.01
HDAC4-214ENST00000535493 NELFBQ8WX92 580 aa15.13■□□□□ 0.01
HDAC4-214ENST00000535493 LRP2BPQ9P2M1 347 aa15.13■□□□□ 0.01
HDAC4-214ENST00000535493 CAMTA1Q9Y6Y1 1673 aa15.13■□□□□ 0.01
HDAC4-214ENST00000535493 SPATA31A3Q5VYP0 1347 aa15.12■□□□□ 0.01
HDAC4-214ENST00000535493 KCNJ18B7U540 433 aa15.12■□□□□ 0.01
HDAC4-214ENST00000535493 KLK7P49862 253 aa15.12■□□□□ 0.01
HDAC4-214ENST00000535493 PMS1P54277 932 aaKnown RBP15.12■□□□□ 0.01
HDAC4-214ENST00000535493 AMPD2Q01433 879 aa15.12■□□□□ 0.01
HDAC4-214ENST00000535493 KCNJ12Q14500 433 aa15.12■□□□□ 0.01
HDAC4-214ENST00000535493 PIK3AP1Q6ZUJ8 805 aa15.12■□□□□ 0.01
HDAC4-214ENST00000535493 TMTC1Q8IUR5 882 aa15.12■□□□□ 0.01
HDAC4-214ENST00000535493 ELOA2Q8IYF1 753 aaPredicted RBP15.12■□□□□ 0.01
HDAC4-214ENST00000535493 CTAGE1Q96RT6 745 aa15.12■□□□□ 0.01
HDAC4-214ENST00000535493 CNNM2Q9H8M5 875 aa15.12■□□□□ 0.01
HDAC4-214ENST00000535493 EPN1Q9Y6I3 576 aaPredicted RBP15.12■□□□□ 0.01
HDAC4-214ENST00000535493 ECM29Q5VYK3 1845 aa15.12■□□□□ 0.01
HDAC4-214ENST00000535493 PCDH11XQ9BZA7 1347 aa15.12■□□□□ 0.01
HDAC4-214ENST00000535493 PCDH11YQ9BZA8 1340 aa15.12■□□□□ 0.01
HDAC4-214ENST00000535493 KRT2P35908 639 aa15.12■□□□□ 0.01
HDAC4-214ENST00000535493 IL17AQ16552 155 aa15.12■□□□□ 0.01
HDAC4-214ENST00000535493 TTC19Q6DKK2 380 aaPredicted RBP15.12■□□□□ 0.01
HDAC4-214ENST00000535493 CYP26C1Q6V0L0 522 aa15.12■□□□□ 0.01
HDAC4-214ENST00000535493 EHD4Q9H223 541 aa15.12■□□□□ 0.01
HDAC4-214ENST00000535493 RCCD1A6NED2 376 aa15.11■□□□□ 0.01
HDAC4-214ENST00000535493 EIF3CLB5ME19 914 aaKnown RBP15.11■□□□□ 0.01
HDAC4-214ENST00000535493 NDUFA10O95299 355 aa15.11■□□□□ 0.01
HDAC4-214ENST00000535493 SYF2O95926 243 aaKnown RBP15.11■□□□□ 0.01
HDAC4-214ENST00000535493 ARID4AP29374 1257 aaPredicted RBP15.11■□□□□ 0.01
HDAC4-214ENST00000535493 PRCPP42785 496 aa15.11■□□□□ 0.01
HDAC4-214ENST00000535493 CYP27A1Q02318 531 aa15.11■□□□□ 0.01
HDAC4-214ENST00000535493 TCP11X2Q5H9J9 407 aa15.11■□□□□ 0.01
HDAC4-214ENST00000535493 GIGYF2Q6Y7W6 1299 aaKnown RBP15.11■□□□□ 0.01
HDAC4-214ENST00000535493 GSDMAQ96QA5 445 aa15.11■□□□□ 0.01
HDAC4-214ENST00000535493 PSMB7Q99436 277 aa15.11■□□□□ 0.01
HDAC4-214ENST00000535493 EIF3CQ99613 913 aaKnown RBP15.11■□□□□ 0.01
HDAC4-214ENST00000535493 POLD4Q9HCU8 107 aa15.11■□□□□ 0.01
HDAC4-214ENST00000535493 FBXO3Q9UK99 471 aa15.11■□□□□ 0.01
HDAC4-214ENST00000535493 SPEF2Q9C093 1822 aa15.11■□□□□ 0.01
HDAC4-214ENST00000535493 A0A0G2JS52 829 aa15.11■□□□□ 0.01
HDAC4-214ENST00000535493 PP2D1A8MPX8 630 aa15.11■□□□□ 0.01
HDAC4-214ENST00000535493 ERVV-2B6SEH9 535 aa15.11■□□□□ 0.01
HDAC4-214ENST00000535493 NKRFO15226 690 aaKnown RBP eCLIP15.11■□□□□ 0.018e-6■□□□□ 9.5
HDAC4-214ENST00000535493 ERCC3P19447 782 aa15.11■□□□□ 0.01
HDAC4-214ENST00000535493 PIP4K2BP78356 416 aa15.11■□□□□ 0.01
HDAC4-214ENST00000535493 PPARAQ07869 468 aa15.11■□□□□ 0.01
HDAC4-214ENST00000535493 PUM3Q15397 648 aaKnown RBP15.11■□□□□ 0.01
HDAC4-214ENST00000535493 CCDC122Q5T0U0 273 aa15.11■□□□□ 0.01
HDAC4-214ENST00000535493 PACS2Q86VP3 889 aa15.11■□□□□ 0.01
HDAC4-214ENST00000535493 ENAHQ8N8S7 591 aaPredicted RBP15.11■□□□□ 0.01
HDAC4-214ENST00000535493 TSPYL1Q9H0U9 437 aa15.11■□□□□ 0.01
HDAC4-214ENST00000535493 TMOD3Q9NYL9 352 aa15.11■□□□□ 0.01
HDAC4-214ENST00000535493 SOS2Q07890 1332 aaPredicted RBP15.11■□□□□ 0.01
HDAC4-214ENST00000535493 MST1RQ04912 1400 aa15.1■□□□□ 0.01
HDAC4-214ENST00000535493 PAK1Q13153 545 aa15.1■□□□□ 0.01
HDAC4-214ENST00000535493 TTC38Q5R3I4 469 aa15.1■□□□□ 0.01
HDAC4-214ENST00000535493 STAG1Q8WVM7 1258 aa15.1■□□□□ 0.01
HDAC4-214ENST00000535493 LPIN2Q92539 896 aa15.1■□□□□ 0.01
HDAC4-214ENST00000535493 DRC1Q96MC2 740 aa15.1■□□□□ 0.01
HDAC4-214ENST00000535493 NACAP1Q9BZK3 213 aa15.1■□□□□ 0.01
HDAC4-214ENST00000535493 LACRTQ9GZZ8 138 aa15.1■□□□□ 0.01
HDAC4-214ENST00000535493 AGPAT5Q9NUQ2 364 aa15.1■□□□□ 0.01
HDAC4-214ENST00000535493 GNL3LQ9NVN8 582 aaKnown RBP15.1■□□□□ 0.01
HDAC4-214ENST00000535493 MTMR7Q9Y216 660 aa15.1■□□□□ 0.01
HDAC4-214ENST00000535493 CCDC196A0A1B0GTZ2 297 aa15.1■□□□□ 0.01
HDAC4-214ENST00000535493 MACROD2A1Z1Q3 448 aa15.1■□□□□ 0.01
HDAC4-214ENST00000535493 PPARDQ03181 441 aa15.1■□□□□ 0.01
HDAC4-214ENST00000535493 ALX1Q15699 326 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms