RNA–Protein interactions for RNA: ENST00000533492.1

CPSF1-211, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 510 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-211ENST00000533492 GPAA1O43292 621 aa18.5■□□□□ 0.55
CPSF1-211ENST00000533492 CNMDO75829 334 aa18.5■□□□□ 0.55
CPSF1-211ENST00000533492 APPP05067 770 aa18.5■□□□□ 0.55
CPSF1-211ENST00000533492 GNAT2P19087 354 aa18.5■□□□□ 0.55
CPSF1-211ENST00000533492 ATP2B2Q01814 1243 aa18.5■□□□□ 0.55
CPSF1-211ENST00000533492 SBK1Q52WX2 424 aa18.5■□□□□ 0.55
CPSF1-211ENST00000533492 LBX2Q6XYB7 198 aa18.5■□□□□ 0.55
CPSF1-211ENST00000533492 LPAR1Q92633 364 aa18.5■□□□□ 0.55
CPSF1-211ENST00000533492 TMX2Q9Y320 296 aa18.5■□□□□ 0.55
CPSF1-211ENST00000533492 ZKSCAN1P17029 563 aaPredicted RBP18.49■□□□□ 0.55
CPSF1-211ENST00000533492 MX1P20591 662 aa18.49■□□□□ 0.55
CPSF1-211ENST00000533492 TRIM32Q13049 653 aa18.49■□□□□ 0.55
CPSF1-211ENST00000533492 CLEC10AQ8IUN9 316 aa18.49■□□□□ 0.55
CPSF1-211ENST00000533492 STK11IPQ8N1F8 1099 aa18.49■□□□□ 0.55
CPSF1-211ENST00000533492 PI4K2BQ8TCG2 481 aa18.49■□□□□ 0.55
CPSF1-211ENST00000533492 OTUD7AQ8TE49 926 aaPredicted RBP18.49■□□□□ 0.55
CPSF1-211ENST00000533492 TRIB2Q92519 343 aa18.49■□□□□ 0.55
CPSF1-211ENST00000533492 FSD1Q9BTV5 496 aa18.49■□□□□ 0.55
CPSF1-211ENST00000533492 KANSL2Q9H9L4 492 aa18.49■□□□□ 0.55
CPSF1-211ENST00000533492 MKNK2Q9HBH9 465 aa18.49■□□□□ 0.55
CPSF1-211ENST00000533492 BTBD7Q9P203 1132 aa18.49■□□□□ 0.55
CPSF1-211ENST00000533492 IVNS1ABPQ9Y6Y0 642 aa18.49■□□□□ 0.55
CPSF1-211ENST00000533492 EEF2P13639 858 aaKnown RBP18.48■□□□□ 0.55
CPSF1-211ENST00000533492 TDO2P48775 406 aa18.48■□□□□ 0.55
CPSF1-211ENST00000533492 MORN1Q5T089 497 aa18.48■□□□□ 0.55
CPSF1-211ENST00000533492 SIAH1Q8IUQ4 282 aa18.48■□□□□ 0.55
CPSF1-211ENST00000533492 SPICE1Q8N0Z3 855 aa18.48■□□□□ 0.55
CPSF1-211ENST00000533492 VCPKMTQ9H867 229 aa18.48■□□□□ 0.55
CPSF1-211ENST00000533492 PLXNB2O15031 1838 aa18.47■□□□□ 0.55
CPSF1-211ENST00000533492 M0R2C6 588 aa18.47■□□□□ 0.55
CPSF1-211ENST00000533492 FLOT1O75955 427 aa18.47■□□□□ 0.55
CPSF1-211ENST00000533492 SLC34A2O95436 690 aa18.47■□□□□ 0.55
CPSF1-211ENST00000533492 MAP2K5Q13163 448 aa18.47■□□□□ 0.55
CPSF1-211ENST00000533492 KIAA1755Q5JYT7 1200 aa18.47■□□□□ 0.55
CPSF1-211ENST00000533492 SAMD1Q6SPF0 538 aaPredicted RBP18.47■□□□□ 0.55
CPSF1-211ENST00000533492 UBE2Q1Q7Z7E8 422 aa18.47■□□□□ 0.55
CPSF1-211ENST00000533492 USP6NLQ92738 828 aa18.47■□□□□ 0.55
CPSF1-211ENST00000533492 APBA2Q99767 749 aa18.47■□□□□ 0.55
CPSF1-211ENST00000533492 NACAP1Q9BZK3 213 aa18.47■□□□□ 0.55
CPSF1-211ENST00000533492 CRISPLD2Q9H0B8 497 aa18.47■□□□□ 0.55
CPSF1-211ENST00000533492 SLC15A5A6NIM6 579 aa18.46■□□□□ 0.55
CPSF1-211ENST00000533492 PATL2C9JE40 543 aaKnown RBP18.46■□□□□ 0.55
CPSF1-211ENST00000533492 H0YGN5 161 aa18.46■□□□□ 0.55
CPSF1-211ENST00000533492 WDR46O15213 610 aaKnown RBP18.46■□□□□ 0.55
CPSF1-211ENST00000533492 RAD21O60216 631 aa18.46■□□□□ 0.55
CPSF1-211ENST00000533492 PRKAR2AP13861 404 aaKnown RBP18.46■□□□□ 0.55
CPSF1-211ENST00000533492 PTPREP23469 700 aa18.46■□□□□ 0.55
CPSF1-211ENST00000533492 ZNF287Q9HBT7 754 aa18.46■□□□□ 0.55
CPSF1-211ENST00000533492 GOPCQ9HD26 462 aa18.46■□□□□ 0.55
CPSF1-211ENST00000533492 DSG3P32926 999 aa18.45■□□□□ 0.54
CPSF1-211ENST00000533492 HDAC1Q13547 482 aaPredicted RBP18.45■□□□□ 0.54
CPSF1-211ENST00000533492 AAMPQ13685 434 aa18.45■□□□□ 0.54
CPSF1-211ENST00000533492 PLS1Q14651 629 aa18.45■□□□□ 0.54
CPSF1-211ENST00000533492 CCL14Q16627 93 aa18.45■□□□□ 0.54
CPSF1-211ENST00000533492 IFNL3Q8IZI9 196 aa18.45■□□□□ 0.54
CPSF1-211ENST00000533492 ZNF444Q8N0Y2 327 aaPredicted RBP18.45■□□□□ 0.54
CPSF1-211ENST00000533492 MB21D1Q8N884 522 aa18.45■□□□□ 0.54
CPSF1-211ENST00000533492 SEC62Q99442 399 aaKnown RBP18.45■□□□□ 0.54
CPSF1-211ENST00000533492 SPATC1LQ9H0A9 340 aa18.45■□□□□ 0.54
CPSF1-211ENST00000533492 RASA1P20936 1047 aa18.44■□□□□ 0.54
CPSF1-211ENST00000533492 CACNB2Q08289 660 aaPredicted RBP18.44■□□□□ 0.54
CPSF1-211ENST00000533492 MAP3K21Q5TCX8 1036 aa18.44■□□□□ 0.54
CPSF1-211ENST00000533492 NECAB2Q7Z6G3 386 aa18.44■□□□□ 0.54
CPSF1-211ENST00000533492 ANKLE1Q8NAG6 615 aa18.44■□□□□ 0.54
CPSF1-211ENST00000533492 PAWRQ96IZ0 340 aaKnown RBP18.44■□□□□ 0.54
CPSF1-211ENST00000533492 MOV10L1Q9BXT6 1211 aaKnown RBP18.44■□□□□ 0.54
CPSF1-211ENST00000533492 EPB41L4AQ9HCS5 686 aaPredicted RBP18.44■□□□□ 0.54
CPSF1-211ENST00000533492 NR2E3Q9Y5X4 410 aa18.44■□□□□ 0.54
CPSF1-211ENST00000533492 STRNO43815 780 aa18.43■□□□□ 0.54
CPSF1-211ENST00000533492 GRB14Q14449 540 aa18.43■□□□□ 0.54
CPSF1-211ENST00000533492 ZMYM1Q5SVZ6 1142 aa18.43■□□□□ 0.54
CPSF1-211ENST00000533492 MFSD14CQ5VZR4 134 aa18.43■□□□□ 0.54
CPSF1-211ENST00000533492 DPP9Q86TI2 863 aa18.43■□□□□ 0.54
CPSF1-211ENST00000533492 ATG4CQ96DT6 458 aa18.43■□□□□ 0.54
CPSF1-211ENST00000533492 SLC3A2P08195 630 aaKnown RBP18.42■□□□□ 0.54
CPSF1-211ENST00000533492 ERCC3P19447 782 aa18.42■□□□□ 0.54
CPSF1-211ENST00000533492 HABP4Q5JVS0 413 aaKnown RBP18.42■□□□□ 0.54
CPSF1-211ENST00000533492 NCAPG2Q86XI2 1143 aa18.42■□□□□ 0.54
CPSF1-211ENST00000533492 SHCBP1Q8NEM2 672 aa18.42■□□□□ 0.54
CPSF1-211ENST00000533492 EVI5LQ96CN4 794 aa18.42■□□□□ 0.54
CPSF1-211ENST00000533492 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.42■□□□□ 0.54
CPSF1-211ENST00000533492 NAPBQ9H115 298 aa18.42■□□□□ 0.54
CPSF1-211ENST00000533492 RWDD1Q9H446 243 aaPredicted RBP18.42■□□□□ 0.54
CPSF1-211ENST00000533492 SALL3Q9BXA9 1300 aa18.42■□□□□ 0.54
CPSF1-211ENST00000533492 CEP290O15078 2479 aa18.42■□□□□ 0.54
CPSF1-211ENST00000533492 EVI5O60447 810 aa18.41■□□□□ 0.54
CPSF1-211ENST00000533492 PRDM1O75626 825 aa18.41■□□□□ 0.54
CPSF1-211ENST00000533492 HOXC6P09630 235 aa18.41■□□□□ 0.54
CPSF1-211ENST00000533492 PDE1AP54750 535 aa18.41■□□□□ 0.54
CPSF1-211ENST00000533492 PDE4BQ07343 736 aa18.41■□□□□ 0.54
CPSF1-211ENST00000533492 NBPF3Q9H094 633 aa18.41■□□□□ 0.54
CPSF1-211ENST00000533492 MROH8Q9H579 483 aa18.41■□□□□ 0.54
CPSF1-211ENST00000533492 SLC5A4Q9NY91 659 aa18.41■□□□□ 0.54
CPSF1-211ENST00000533492 NYAP2Q9P242 653 aa18.41■□□□□ 0.54
CPSF1-211ENST00000533492 STAP2Q9UGK3 403 aa18.41■□□□□ 0.54
CPSF1-211ENST00000533492 OGDHLQ9ULD0 1010 aa18.41■□□□□ 0.54
CPSF1-211ENST00000533492 ROBO3Q96MS0 1386 aa18.41■□□□□ 0.54
CPSF1-211ENST00000533492 CCND3P30281 292 aaPredicted RBP18.4■□□□□ 0.54
CPSF1-211ENST00000533492 FAM83BQ5T0W9 1011 aa18.4■□□□□ 0.54
CPSF1-211ENST00000533492 NPLOC4Q8TAT6 608 aa18.4■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 357.7 ms