RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 SUSD2Q9UGT4 822 aa4.31□□□□□ -1.72
CD44-234ENST00000531873 AP4E1Q9UPM8 1137 aa4.31□□□□□ -1.72
CD44-234ENST00000531873 PRKAB1Q9Y478 270 aa4.31□□□□□ -1.72
CD44-234ENST00000531873 COL4A3BPQ9Y5P4 624 aa4.31□□□□□ -1.72
CD44-234ENST00000531873 hCG_2014768A0A024R1R8 64 aa4.3□□□□□ -1.72
CD44-234ENST00000531873 C9IYK1 514 aa4.3□□□□□ -1.72
CD44-234ENST00000531873 DNAJC6O75061 913 aa4.3□□□□□ -1.72
CD44-234ENST00000531873 ASMTLO95671 621 aa4.3□□□□□ -1.72
CD44-234ENST00000531873 IGLV1-40P01703 118 aa4.3□□□□□ -1.72
CD44-234ENST00000531873 HCLS1P14317 486 aaPredicted RBP4.3□□□□□ -1.72
CD44-234ENST00000531873 CAP2P40123 477 aa4.3□□□□□ -1.72
CD44-234ENST00000531873 PMS1P54277 932 aaKnown RBP4.3□□□□□ -1.72
CD44-234ENST00000531873 YARSP54577 528 aaKnown RBP4.3□□□□□ -1.72
CD44-234ENST00000531873 GYS2P54840 703 aa4.3□□□□□ -1.72
CD44-234ENST00000531873 SLC7A5Q01650 507 aa4.3□□□□□ -1.72
CD44-234ENST00000531873 TMEM67Q5HYA8 995 aa4.3□□□□□ -1.72
CD44-234ENST00000531873 LCE4AQ5TA78 99 aa4.3□□□□□ -1.72
CD44-234ENST00000531873 PRAMEF13Q5VWM6 474 aa4.3□□□□□ -1.72
CD44-234ENST00000531873 FOXB2Q5VYV0 432 aa4.3□□□□□ -1.72
CD44-234ENST00000531873 TDRD10Q5VZ19 366 aaKnown RBP4.3□□□□□ -1.72
CD44-234ENST00000531873 SLC6A19Q695T7 634 aa4.3□□□□□ -1.72
CD44-234ENST00000531873 ACAD11Q709F0 780 aa4.3□□□□□ -1.72
CD44-234ENST00000531873 PHACTR4Q8IZ21 702 aa4.3□□□□□ -1.72
CD44-234ENST00000531873 SMG8Q8ND04 991 aaKnown RBP4.3□□□□□ -1.72
CD44-234ENST00000531873 ISL2Q96A47 359 aa4.3□□□□□ -1.72
CD44-234ENST00000531873 KIF2CQ99661 725 aa4.3□□□□□ -1.72
CD44-234ENST00000531873 SPATA9Q9BWV2 254 aa4.3□□□□□ -1.72
CD44-234ENST00000531873 KRTAP4-5Q9BYR2 181 aa4.3□□□□□ -1.72
CD44-234ENST00000531873 ATXN3LQ9H3M9 355 aa4.3□□□□□ -1.72
CD44-234ENST00000531873 AKTIPQ9H8T0 292 aa4.3□□□□□ -1.72
CD44-234ENST00000531873 SPC25Q9HBM1 224 aa4.3□□□□□ -1.72
CD44-234ENST00000531873 RAD18Q9NS91 495 aa4.3□□□□□ -1.72
CD44-234ENST00000531873 SUCOQ9UBS9 1254 aaKnown RBP4.3□□□□□ -1.72
CD44-234ENST00000531873 ADGRE2Q9UHX3 823 aa4.3□□□□□ -1.72
CD44-234ENST00000531873 CD2APQ9Y5K6 639 aa4.3□□□□□ -1.72
CD44-234ENST00000531873 ACTL7BQ9Y614 415 aa4.3□□□□□ -1.72
CD44-234ENST00000531873 CBFA2T2O43439 604 aa4.29□□□□□ -1.72
CD44-234ENST00000531873 TGFB1P01137 390 aa4.29□□□□□ -1.72
CD44-234ENST00000531873 DRD2P14416 443 aa4.29□□□□□ -1.72
CD44-234ENST00000531873 SOX4Q06945 474 aaPredicted RBP4.29□□□□□ -1.72
CD44-234ENST00000531873 GNPTABQ3T906 1256 aa4.29□□□□□ -1.72
CD44-234ENST00000531873 DALRD3Q5D0E6 543 aaKnown RBP4.29□□□□□ -1.72
CD44-234ENST00000531873 DTX1Q86Y01 620 aa4.29□□□□□ -1.72
CD44-234ENST00000531873 RPUSD2Q8IZ73 545 aaKnown RBP4.29□□□□□ -1.72
CD44-234ENST00000531873 ZNF513Q8N8E2 541 aaPredicted RBP4.29□□□□□ -1.72
CD44-234ENST00000531873 C2CD4AQ8NCU7 369 aaPredicted RBP4.29□□□□□ -1.72
CD44-234ENST00000531873 ZSWIM2Q8NEG5 633 aa4.29□□□□□ -1.72
CD44-234ENST00000531873 BAHD1Q8TBE0 780 aaPredicted RBP4.29□□□□□ -1.72
CD44-234ENST00000531873 ZNF507Q8TCN5 953 aa4.29□□□□□ -1.72
CD44-234ENST00000531873 DCAF11Q8TEB1 546 aa4.29□□□□□ -1.72
CD44-234ENST00000531873 PPP1R13LQ8WUF5 828 aa4.29□□□□□ -1.72
CD44-234ENST00000531873 CYB5D2Q8WUJ1 264 aa4.29□□□□□ -1.72
CD44-234ENST00000531873 RNF208Q9H0X6 261 aa4.29□□□□□ -1.72
CD44-234ENST00000531873 EPN3Q9H201 632 aa4.29□□□□□ -1.72
CD44-234ENST00000531873 PCDH12Q9NPG4 1184 aa4.29□□□□□ -1.72
CD44-234ENST00000531873 ARHGEF4Q9NR80 690 aa4.29□□□□□ -1.72
CD44-234ENST00000531873 PICK1Q9NRD5 415 aa4.29□□□□□ -1.72
CD44-234ENST00000531873 FAM105AQ9NUU6 356 aa4.29□□□□□ -1.72
CD44-234ENST00000531873 FAM86C1Q9NVL1 165 aa4.29□□□□□ -1.72
CD44-234ENST00000531873 APEX2Q9UBZ4 518 aa4.29□□□□□ -1.72
CD44-234ENST00000531873 RAXQ9Y2V3 346 aa4.29□□□□□ -1.72
CD44-234ENST00000531873 NOP58Q9Y2X3 529 aaKnown RBP4.29□□□□□ -1.72
CD44-234ENST00000531873 A0A1W2PQU0 124 aa4.28□□□□□ -1.72
CD44-234ENST00000531873 F8W735 103 aaPredicted RBP4.28□□□□□ -1.72
CD44-234ENST00000531873 RBAK-RBAKDNI3L0D1 243 aa4.28□□□□□ -1.72
CD44-234ENST00000531873 PPP1R12AO14974 1030 aaPredicted RBP4.28□□□□□ -1.72
CD44-234ENST00000531873 SHOXO15266 292 aa4.28□□□□□ -1.72
CD44-234ENST00000531873 RAB11FIP3O75154 756 aa4.28□□□□□ -1.72
CD44-234ENST00000531873 CST3P01034 146 aaPredicted RBP4.28□□□□□ -1.72
CD44-234ENST00000531873 EPHX1P07099 455 aa4.28□□□□□ -1.72
CD44-234ENST00000531873 MASP1P48740 699 aa4.28□□□□□ -1.72
CD44-234ENST00000531873 ZNF143P52747 638 aaPredicted RBP4.28□□□□□ -1.72
CD44-234ENST00000531873 IGBP1P78318 339 aa4.28□□□□□ -1.72
CD44-234ENST00000531873 AMPD3Q01432 767 aa4.28□□□□□ -1.72
CD44-234ENST00000531873 TCEA2Q15560 299 aa4.28□□□□□ -1.72
CD44-234ENST00000531873 LONRF2Q1L5Z9 754 aa4.28□□□□□ -1.72
CD44-234ENST00000531873 AXDND1Q5T1B0 1012 aaPredicted RBP4.28□□□□□ -1.72
CD44-234ENST00000531873 NUTM2GQ5VZR2 741 aa4.28□□□□□ -1.72
CD44-234ENST00000531873 ZDHHC13Q8IUH4 622 aa4.28□□□□□ -1.72
CD44-234ENST00000531873 AGGF1Q8N302 714 aaeCLIP4.28□□□□□ -1.72
CD44-234ENST00000531873 ZBTB38Q8NAP3 1195 aaPredicted RBP4.28□□□□□ -1.72
CD44-234ENST00000531873 KISS1RQ969F8 398 aaPredicted RBP4.28□□□□□ -1.72
CD44-234ENST00000531873 ZNF512BQ96KM6 892 aaPredicted RBP4.28□□□□□ -1.72
CD44-234ENST00000531873 EXOC2Q96KP1 924 aa4.28□□□□□ -1.72
CD44-234ENST00000531873 CCDC74BQ96LY2 380 aa4.28□□□□□ -1.72
CD44-234ENST00000531873 HAUS7Q99871 368 aa4.28□□□□□ -1.72
CD44-234ENST00000531873 KLHL25Q9H0H3 589 aa4.28□□□□□ -1.72
CD44-234ENST00000531873 MRPL18Q9H0U6 180 aaKnown RBP4.28□□□□□ -1.72
CD44-234ENST00000531873 SLKQ9H2G2 1235 aaPredicted RBP4.28□□□□□ -1.72
CD44-234ENST00000531873 CYP4F12Q9HCS2 524 aa4.28□□□□□ -1.72
CD44-234ENST00000531873 TBX1O43435 398 aa4.27□□□□□ -1.73
CD44-234ENST00000531873 CLEC3AO75596 197 aa4.27□□□□□ -1.73
CD44-234ENST00000531873 CAPNS1P04632 268 aa4.27□□□□□ -1.73
CD44-234ENST00000531873 TP53P04637 393 aaPredicted RBP4.27□□□□□ -1.73
CD44-234ENST00000531873 VIL1P09327 827 aaKnown RBP4.27□□□□□ -1.73
CD44-234ENST00000531873 PREPP48147 710 aa4.27□□□□□ -1.73
CD44-234ENST00000531873 CBX2Q14781 532 aaPredicted RBP4.27□□□□□ -1.73
CD44-234ENST00000531873 BBS9Q3SYG4 887 aa4.27□□□□□ -1.73
CD44-234ENST00000531873 YOD1Q5VVQ6 348 aaPredicted RBP4.27□□□□□ -1.73
CD44-234ENST00000531873 DCAF15Q66K64 600 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms