RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 BRWD1Q9NSI6 2320 aa10.24□□□□□ -0.77
CD44-232ENST00000531118 SLC15A5A6NIM6 579 aa10.24□□□□□ -0.77
CD44-232ENST00000531118 EYA2O00167 538 aa10.24□□□□□ -0.77
CD44-232ENST00000531118 IGHA2P01877 340 aa10.24□□□□□ -0.77
CD44-232ENST00000531118 HOXC6P09630 235 aa10.24□□□□□ -0.77
CD44-232ENST00000531118 PHKA1P46020 1223 aa10.24□□□□□ -0.77
CD44-232ENST00000531118 ADGRE1Q14246 886 aa10.24□□□□□ -0.77
CD44-232ENST00000531118 GRB14Q14449 540 aa10.24□□□□□ -0.77
CD44-232ENST00000531118 ATP2B3Q16720 1220 aa10.24□□□□□ -0.77
CD44-232ENST00000531118 CCDC27Q2M243 656 aa10.24□□□□□ -0.77
CD44-232ENST00000531118 WDR78Q5VTH9 848 aa10.24□□□□□ -0.77
CD44-232ENST00000531118 WWC1Q8IX03 1113 aa10.24□□□□□ -0.77
CD44-232ENST00000531118 ARRDC4Q8NCT1 418 aa10.24□□□□□ -0.77
CD44-232ENST00000531118 NPLOC4Q8TAT6 608 aa10.24□□□□□ -0.77
CD44-232ENST00000531118 EPAS1Q99814 870 aa10.24□□□□□ -0.77
CD44-232ENST00000531118 GNL3LQ9NVN8 582 aaKnown RBP10.24□□□□□ -0.77
CD44-232ENST00000531118 PRRC2BQ5JSZ5 2229 aaKnown RBP10.23□□□□□ -0.77
CD44-232ENST00000531118 CHD7Q9P2D1 2997 aa10.23□□□□□ -0.77
CD44-232ENST00000531118 KIAA0355O15063 1070 aa10.23□□□□□ -0.77
CD44-232ENST00000531118 GLRX3O76003 335 aaKnown RBP10.23□□□□□ -0.77
CD44-232ENST00000531118 ADCYAP1R1P41586 468 aa10.23□□□□□ -0.77
CD44-232ENST00000531118 FOSBP53539 338 aa10.23□□□□□ -0.77
CD44-232ENST00000531118 ATP2B2Q01814 1243 aa10.23□□□□□ -0.77
CD44-232ENST00000531118 TLE2Q04725 743 aa10.23□□□□□ -0.77
CD44-232ENST00000531118 CCDC85BQ15834 202 aaPredicted RBP10.23□□□□□ -0.77
CD44-232ENST00000531118 ANO1Q5XXA6 986 aa10.23□□□□□ -0.77
CD44-232ENST00000531118 SLF2Q8IX21 1173 aa10.23□□□□□ -0.77
CD44-232ENST00000531118 FERMT2Q96AC1 680 aa10.23□□□□□ -0.77
CD44-232ENST00000531118 SNX27Q96L92 541 aa10.23□□□□□ -0.77
CD44-232ENST00000531118 PBX4Q9BYU1 374 aa10.23□□□□□ -0.77
CD44-232ENST00000531118 CXXC1Q9P0U4 656 aaPredicted RBP10.23□□□□□ -0.77
CD44-232ENST00000531118 HERC5Q9UII4 1024 aaKnown RBP10.23□□□□□ -0.77
CD44-232ENST00000531118 PDS5AQ29RF7 1337 aaKnown RBP10.23□□□□□ -0.77
CD44-232ENST00000531118 PARP14Q460N5 1801 aa10.22□□□□□ -0.77
CD44-232ENST00000531118 GPR75-ASB3A0A0A6YYF3 556 aa10.22□□□□□ -0.77
CD44-232ENST00000531118 C19orf81C9J6K1 198 aa10.22□□□□□ -0.77
CD44-232ENST00000531118 USP17L10C9JJH3 530 aa10.22□□□□□ -0.77
CD44-232ENST00000531118 ASNSP08243 561 aa10.22□□□□□ -0.77
CD44-232ENST00000531118 RAG1P15918 1043 aa10.22□□□□□ -0.77
CD44-232ENST00000531118 PTPREP23469 700 aa10.22□□□□□ -0.77
CD44-232ENST00000531118 PBX2P40425 430 aa10.22□□□□□ -0.77
CD44-232ENST00000531118 RFX5P48382 616 aaPredicted RBP10.22□□□□□ -0.77
CD44-232ENST00000531118 CCNA1P78396 465 aa10.22□□□□□ -0.77
CD44-232ENST00000531118 JAG1P78504 1218 aa10.22□□□□□ -0.77
CD44-232ENST00000531118 RASGRF1Q13972 1273 aa10.22□□□□□ -0.77
CD44-232ENST00000531118 LRRC41Q15345 812 aa10.22□□□□□ -0.77
CD44-232ENST00000531118 SHROOM1Q2M3G4 852 aaPredicted RBP10.22□□□□□ -0.77
CD44-232ENST00000531118 FAM47AQ5JRC9 791 aa10.22□□□□□ -0.77
CD44-232ENST00000531118 PPP4R3BQ5MIZ7 849 aa10.22□□□□□ -0.77
CD44-232ENST00000531118 ATG9AQ7Z3C6 839 aa10.22□□□□□ -0.77
CD44-232ENST00000531118 MARVELD3Q96A59 401 aa10.22□□□□□ -0.77
CD44-232ENST00000531118 DNAJC18Q9H819 358 aa10.22□□□□□ -0.77
CD44-232ENST00000531118 ABCF2Q9UG63 623 aa10.22□□□□□ -0.77
CD44-232ENST00000531118 ZBTB21Q9ULJ3 1066 aa10.22□□□□□ -0.77
CD44-232ENST00000531118 RABGAP1Q9Y3P9 1069 aa10.22□□□□□ -0.77
CD44-232ENST00000531118 TACC3Q9Y6A5 838 aa10.22□□□□□ -0.77
CD44-232ENST00000531118 IVNS1ABPQ9Y6Y0 642 aa10.22□□□□□ -0.77
CD44-232ENST00000531118 MYH1P12882 1939 aa10.22□□□□□ -0.77
CD44-232ENST00000531118 ROBO3Q96MS0 1386 aa10.22□□□□□ -0.77
CD44-232ENST00000531118 ZNFX1Q9P2E3 1918 aaKnown RBP10.21□□□□□ -0.77
CD44-232ENST00000531118 SEPT4O43236 478 aa10.21□□□□□ -0.77
CD44-232ENST00000531118 PQBP1O60828 265 aaKnown RBP10.21□□□□□ -0.77
CD44-232ENST00000531118 GDF11O95390 407 aa10.21□□□□□ -0.77
CD44-232ENST00000531118 EXOSC9Q06265 439 aaKnown RBP10.21□□□□□ -0.77
CD44-232ENST00000531118 TMEM31Q5JXX7 168 aa10.21□□□□□ -0.77
CD44-232ENST00000531118 OLFML2BQ68BL8 750 aa10.21□□□□□ -0.77
CD44-232ENST00000531118 TYW1BQ6NUM6 668 aa10.21□□□□□ -0.77
CD44-232ENST00000531118 ALYREFQ86V81 257 aaKnown RBP10.21□□□□□ -0.77
CD44-232ENST00000531118 ZNF454Q8N9F8 522 aa10.21□□□□□ -0.77
CD44-232ENST00000531118 ZNF384Q8TF68 577 aa10.21□□□□□ -0.77
CD44-232ENST00000531118 DDX12PQ92771 950 aa10.21□□□□□ -0.77
CD44-232ENST00000531118 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.21□□□□□ -0.77
CD44-232ENST00000531118 EPHX3Q9H6B9 360 aa10.21□□□□□ -0.77
CD44-232ENST00000531118 PHF24Q9UPV7 400 aa10.21□□□□□ -0.77
CD44-232ENST00000531118 REV3LO60673 3130 aa10.21□□□□□ -0.78
CD44-232ENST00000531118 XIRP2A4UGR9 3374 aa10.2□□□□□ -0.78
CD44-232ENST00000531118 GRXCR2A6NFK2 248 aa10.2□□□□□ -0.78
CD44-232ENST00000531118 GRXCR1A8MXD5 290 aa10.2□□□□□ -0.78
CD44-232ENST00000531118 BMP1P13497 986 aa10.2□□□□□ -0.78
CD44-232ENST00000531118 IGFBP4P22692 258 aa10.2□□□□□ -0.78
CD44-232ENST00000531118 ADORA1P30542 326 aa10.2□□□□□ -0.78
CD44-232ENST00000531118 MLLT3P42568 568 aaPredicted RBP10.2□□□□□ -0.78
CD44-232ENST00000531118 KCNQ1P51787 676 aa10.2□□□□□ -0.78
CD44-232ENST00000531118 COL4A4P53420 1690 aaPredicted RBP10.2□□□□□ -0.78
CD44-232ENST00000531118 MECOMQ03112 1051 aa10.2□□□□□ -0.78
CD44-232ENST00000531118 CCDC102BQ68D86 513 aa10.2□□□□□ -0.78
CD44-232ENST00000531118 CCDC129Q6ZRS4 1044 aa10.2□□□□□ -0.78
CD44-232ENST00000531118 C12orf42Q96LP6 360 aa10.2□□□□□ -0.78
CD44-232ENST00000531118 MYO5AQ9Y4I1 1855 aaKnown RBP10.2□□□□□ -0.78
CD44-232ENST00000531118 CACNA1AO00555 2505 aa10.2□□□□□ -0.78
CD44-232ENST00000531118 COL11A1P12107 1806 aaPredicted RBP10.19□□□□□ -0.78
CD44-232ENST00000531118 MAP4K4O95819 1239 aaPredicted RBP10.19□□□□□ -0.78
CD44-232ENST00000531118 TFF2Q03403 129 aa10.19□□□□□ -0.78
CD44-232ENST00000531118 RASIP1Q5U651 963 aa10.19□□□□□ -0.78
CD44-232ENST00000531118 SPTY2D1Q68D10 685 aaPredicted RBP10.19□□□□□ -0.78
CD44-232ENST00000531118 USP17L2Q6R6M4 530 aa10.19□□□□□ -0.78
CD44-232ENST00000531118 LBX2Q6XYB7 198 aa10.19□□□□□ -0.78
CD44-232ENST00000531118 TEX11Q8IYF3 940 aa10.19□□□□□ -0.78
CD44-232ENST00000531118 SIL1Q9H173 461 aa10.19□□□□□ -0.78
CD44-232ENST00000531118 C11orf16Q9NQ32 467 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms