RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 CDHR2Q9BYE9 1310 aa6.56□□□□□ -1.36
CD44-225ENST00000527326 ADGRL2O95490 1459 aa6.56□□□□□ -1.36
CD44-225ENST00000527326 SPDYE3A6NKU9 549 aa6.56□□□□□ -1.36
CD44-225ENST00000527326 ENO4A6NNW6 628 aa6.56□□□□□ -1.36
CD44-225ENST00000527326 MYO1FO00160 1098 aa6.56□□□□□ -1.36
CD44-225ENST00000527326 KIF3BO15066 747 aa6.56□□□□□ -1.36
CD44-225ENST00000527326 EIF3HO15372 352 aaKnown RBP eCLIP6.56□□□□□ -1.36
CD44-225ENST00000527326 ZEB2O60315 1214 aa6.56□□□□□ -1.36
CD44-225ENST00000527326 SMNDC1O75940 238 aaKnown RBP eCLIP6.56□□□□□ -1.36
CD44-225ENST00000527326 PRPF6O94906 941 aaKnown RBP6.56□□□□□ -1.36
CD44-225ENST00000527326 LUC7L3O95232 432 aaKnown RBP6.56□□□□□ -1.36
CD44-225ENST00000527326 ATP5JP18859 108 aa6.56□□□□□ -1.36
CD44-225ENST00000527326 GJA8P48165 433 aa6.56□□□□□ -1.36
CD44-225ENST00000527326 RNF144AP50876 292 aaPredicted RBP6.56□□□□□ -1.36
CD44-225ENST00000527326 IRAK1P51617 712 aa6.56□□□□□ -1.36
CD44-225ENST00000527326 VAC14Q08AM6 782 aa6.56□□□□□ -1.36
CD44-225ENST00000527326 CUL3Q13618 768 aa6.56□□□□□ -1.36
CD44-225ENST00000527326 CASP8Q14790 479 aa6.56□□□□□ -1.36
CD44-225ENST00000527326 STX1AQ16623 288 aa6.56□□□□□ -1.36
CD44-225ENST00000527326 HSP90AB2PQ58FF8 381 aa6.56□□□□□ -1.36
CD44-225ENST00000527326 KLHL10Q6JEL2 608 aa6.56□□□□□ -1.36
CD44-225ENST00000527326 TRIM65Q6PJ69 517 aa6.56□□□□□ -1.36
CD44-225ENST00000527326 SRGAP1Q7Z6B7 1085 aa6.56□□□□□ -1.36
CD44-225ENST00000527326 CEP57Q86XR8 500 aa6.56□□□□□ -1.36
CD44-225ENST00000527326 CCDC125Q86Z20 511 aa6.56□□□□□ -1.36
CD44-225ENST00000527326 OGFOD1Q8N543 542 aa6.56□□□□□ -1.36
CD44-225ENST00000527326 GBP7Q8N8V2 638 aaPredicted RBP6.56□□□□□ -1.36
CD44-225ENST00000527326 LSM14AQ8ND56 463 aaKnown RBP6.56□□□□□ -1.36
CD44-225ENST00000527326 HDAC7Q8WUI4 952 aa6.56□□□□□ -1.36
CD44-225ENST00000527326 LZICQ8WZA0 190 aa6.56□□□□□ -1.36
CD44-225ENST00000527326 PBXIP1Q96AQ6 731 aa6.56□□□□□ -1.36
CD44-225ENST00000527326 RBM41Q96IZ5 413 aaKnown RBP6.56□□□□□ -1.36
CD44-225ENST00000527326 CLIC6Q96NY7 704 aa6.56□□□□□ -1.36
CD44-225ENST00000527326 SPAG5Q96R06 1193 aa6.56□□□□□ -1.36
CD44-225ENST00000527326 TESK2Q96S53 571 aa6.56□□□□□ -1.36
CD44-225ENST00000527326 TRIM4Q9C037 500 aa6.56□□□□□ -1.36
CD44-225ENST00000527326 UNC45AQ9H3U1 944 aa6.56□□□□□ -1.36
CD44-225ENST00000527326 ESF1Q9H501 851 aaKnown RBP6.56□□□□□ -1.36
CD44-225ENST00000527326 SLC39A2Q9NP94 309 aa6.56□□□□□ -1.36
CD44-225ENST00000527326 WDR37Q9Y2I8 494 aa6.56□□□□□ -1.36
CD44-225ENST00000527326 PCDHGC5Q9Y5F6 944 aa6.56□□□□□ -1.36
CD44-225ENST00000527326 FAM135BQ49AJ0 1406 aa6.56□□□□□ -1.36
CD44-225ENST00000527326 PPIP5K1Q6PFW1 1433 aa6.56□□□□□ -1.36
CD44-225ENST00000527326 ADGRL3Q9HAR2 1447 aa6.56□□□□□ -1.36
CD44-225ENST00000527326 NEO1Q92859 1461 aa6.55□□□□□ -1.36
CD44-225ENST00000527326 A0A1W2PRU2 124 aa6.55□□□□□ -1.36
CD44-225ENST00000527326 FRMD3A2A2Y4 597 aa6.55□□□□□ -1.36
CD44-225ENST00000527326 CARNS1A5YM72 827 aa6.55□□□□□ -1.36
CD44-225ENST00000527326 SRRM3A6NNA2 597 aaPredicted RBP6.55□□□□□ -1.36
CD44-225ENST00000527326 BECN2A8MW95 431 aa6.55□□□□□ -1.36
CD44-225ENST00000527326 ABLIM1O14639 778 aa6.55□□□□□ -1.36
CD44-225ENST00000527326 CREB3O43889 395 aa6.55□□□□□ -1.36
CD44-225ENST00000527326 E2F6O75461 281 aa6.55□□□□□ -1.36
CD44-225ENST00000527326 GNAI3P08754 354 aa6.55□□□□□ -1.36
CD44-225ENST00000527326 VCAM1P19320 739 aa6.55□□□□□ -1.36
CD44-225ENST00000527326 AMPHP49418 695 aa6.55□□□□□ -1.36
CD44-225ENST00000527326 CHMP4BP1P59074 171 aa6.55□□□□□ -1.36
CD44-225ENST00000527326 MCCD1P59942 119 aaPredicted RBP6.55□□□□□ -1.36
CD44-225ENST00000527326 KRT85P78386 507 aa6.55□□□□□ -1.36
CD44-225ENST00000527326 TMCO4Q5TGY1 634 aa6.55□□□□□ -1.36
CD44-225ENST00000527326 CCDC80Q76M96 950 aa6.55□□□□□ -1.36
CD44-225ENST00000527326 PLEKHM2Q8IWE5 1019 aa6.55□□□□□ -1.36
CD44-225ENST00000527326 GALNT15Q8N3T1 639 aa6.55□□□□□ -1.36
CD44-225ENST00000527326 TMEM57Q8N5G2 664 aa6.55□□□□□ -1.36
CD44-225ENST00000527326 BCAS4Q8TDM0 211 aa6.55□□□□□ -1.36
CD44-225ENST00000527326 ARHGAP45Q92619 1136 aa6.55□□□□□ -1.36
CD44-225ENST00000527326 TEKT1Q969V4 418 aa6.55□□□□□ -1.36
CD44-225ENST00000527326 JAKMIP2Q96AA8 810 aa6.55□□□□□ -1.36
CD44-225ENST00000527326 ANKRD27Q96NW4 1050 aa6.55□□□□□ -1.36
CD44-225ENST00000527326 TSC22D3Q99576 134 aa6.55□□□□□ -1.36
CD44-225ENST00000527326 GORASP1Q9BQQ3 440 aa6.55□□□□□ -1.36
CD44-225ENST00000527326 BCL2L13Q9BXK5 485 aa6.55□□□□□ -1.36
CD44-225ENST00000527326 CAPS2Q9BXY5 557 aa6.55□□□□□ -1.36
CD44-225ENST00000527326 PLEKHA4Q9H4M7 779 aa6.55□□□□□ -1.36
CD44-225ENST00000527326 SLC40A1Q9NP59 571 aa6.55□□□□□ -1.36
CD44-225ENST00000527326 TRPV5Q9NQA5 729 aa6.55□□□□□ -1.36
CD44-225ENST00000527326 PAPOLBQ9NRJ5 636 aaKnown RBP6.55□□□□□ -1.36
CD44-225ENST00000527326 HOOK1Q9UJC3 728 aaKnown RBP6.55□□□□□ -1.36
CD44-225ENST00000527326 ABCC5O15440 1437 aa6.55□□□□□ -1.36
CD44-225ENST00000527326 POGZQ7Z3K3 1410 aa6.55□□□□□ -1.36
CD44-225ENST00000527326 PIK3R4Q99570 1358 aa6.55□□□□□ -1.36
CD44-225ENST00000527326 RNF17Q9BXT8 1623 aaKnown RBP6.54□□□□□ -1.36
CD44-225ENST00000527326 PTPRMP28827 1452 aa6.54□□□□□ -1.36
CD44-225ENST00000527326 EVC2Q86UK5 1308 aa6.54□□□□□ -1.36
CD44-225ENST00000527326 MYO5CQ9NQX4 1742 aa6.54□□□□□ -1.36
CD44-225ENST00000527326 ADGRB2O60241 1585 aa6.54□□□□□ -1.36
CD44-225ENST00000527326 C9orf84Q5VXU9 1444 aa6.54□□□□□ -1.36
CD44-225ENST00000527326 N4BP1O75113 896 aaKnown RBP6.54□□□□□ -1.36
CD44-225ENST00000527326 RNF8O76064 485 aa6.54□□□□□ -1.36
CD44-225ENST00000527326 ZNF24P17028 368 aa6.54□□□□□ -1.36
CD44-225ENST00000527326 SESN3P58005 492 aa6.54□□□□□ -1.36
CD44-225ENST00000527326 ERVK-9P63128 1117 aa6.54□□□□□ -1.36
CD44-225ENST00000527326 ZBED6P86452 979 aa6.54□□□□□ -1.36
CD44-225ENST00000527326 ATP2B2Q01814 1243 aa6.54□□□□□ -1.36
CD44-225ENST00000527326 WASHC4Q2M389 1173 aa6.54□□□□□ -1.36
CD44-225ENST00000527326 ALDH1L2Q3SY69 923 aa6.54□□□□□ -1.36
CD44-225ENST00000527326 KBTBD12Q3ZCT8 623 aa6.54□□□□□ -1.36
CD44-225ENST00000527326 NUGGCQ68CJ6 796 aa6.54□□□□□ -1.36
CD44-225ENST00000527326 WDR93Q6P2C0 686 aa6.54□□□□□ -1.36
CD44-225ENST00000527326 CYB5D1Q6P9G0 228 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms