RNA–Protein interactions for RNA: ENST00000525078.1

USP47-204, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-204ENST00000525078 CORINQ9Y5Q5 1042 aa6.79□□□□□ -1.32
USP47-204ENST00000525078 PRR36Q9H6K5 1346 aa6.78□□□□□ -1.32
USP47-204ENST00000525078 TTC24A2A3L6 582 aaPredicted RBP6.78□□□□□ -1.32
USP47-204ENST00000525078 NEMP1O14524 444 aa6.78□□□□□ -1.32
USP47-204ENST00000525078 ZNF500O60304 480 aaPredicted RBP6.78□□□□□ -1.32
USP47-204ENST00000525078 ZEB2O60315 1214 aa6.78□□□□□ -1.32
USP47-204ENST00000525078 UPP2O95045 317 aa6.78□□□□□ -1.32
USP47-204ENST00000525078 B3GALT4O96024 378 aa6.78□□□□□ -1.32
USP47-204ENST00000525078 JMJD7P0C870 316 aa6.78□□□□□ -1.32
USP47-204ENST00000525078 MYBL2P10244 700 aa6.78□□□□□ -1.32
USP47-204ENST00000525078 PF4V1P10720 104 aa6.78□□□□□ -1.32
USP47-204ENST00000525078 PABPC1P11940 636 aaKnown RBP6.78□□□□□ -1.32
USP47-204ENST00000525078 SNRPBP14678 240 aaKnown RBP6.78□□□□□ -1.32
USP47-204ENST00000525078 TIMP2P16035 220 aa6.78□□□□□ -1.32
USP47-204ENST00000525078 LIG1P18858 919 aa6.78□□□□□ -1.32
USP47-204ENST00000525078 PLCG1P19174 1290 aa6.78□□□□□ -1.32
USP47-204ENST00000525078 CDK8P49336 464 aa6.78□□□□□ -1.32
USP47-204ENST00000525078 SCNN1BP51168 640 aa6.78□□□□□ -1.32
USP47-204ENST00000525078 ZNF143P52747 638 aaPredicted RBP6.78□□□□□ -1.32
USP47-204ENST00000525078 ZNF460Q14592 562 aa6.78□□□□□ -1.32
USP47-204ENST00000525078 SART3Q15020 963 aaKnown RBP6.78□□□□□ -1.32
USP47-204ENST00000525078 SAFBQ15424 915 aaKnown RBP eCLIP6.78□□□□□ -1.32
USP47-204ENST00000525078 BBS9Q3SYG4 887 aa6.78□□□□□ -1.32
USP47-204ENST00000525078 ARHGAP29Q52LW3 1261 aa6.78□□□□□ -1.32
USP47-204ENST00000525078 ALFQ53S48 1182 aa6.78□□□□□ -1.32
USP47-204ENST00000525078 WIPI1Q5MNZ9 446 aaPredicted RBP6.78□□□□□ -1.32
USP47-204ENST00000525078 SAMD5Q5TGI4 173 aa6.78□□□□□ -1.32
USP47-204ENST00000525078 SCARA3Q6AZY7 606 aa6.78□□□□□ -1.32
USP47-204ENST00000525078 IQSEC1Q6DN90 963 aa6.78□□□□□ -1.32
USP47-204ENST00000525078 MPRIPQ6WCQ1 1025 aa6.78□□□□□ -1.32
USP47-204ENST00000525078 PODNQ7Z5L7 613 aa6.78□□□□□ -1.32
USP47-204ENST00000525078 ZNF354CQ86Y25 554 aa6.78□□□□□ -1.32
USP47-204ENST00000525078 MEIOBQ8N635 442 aa6.78□□□□□ -1.32
USP47-204ENST00000525078 PDILTQ8N807 584 aa6.78□□□□□ -1.32
USP47-204ENST00000525078 LRRN4CLQ8ND94 238 aa6.78□□□□□ -1.32
USP47-204ENST00000525078 DDX54Q8TDD1 881 aaKnown RBP6.78□□□□□ -1.32
USP47-204ENST00000525078 BSNDQ8WZ55 320 aa6.78□□□□□ -1.32
USP47-204ENST00000525078 SCLT1Q96NL6 688 aa6.78□□□□□ -1.32
USP47-204ENST00000525078 PBX4Q9BYU1 374 aa6.78□□□□□ -1.32
USP47-204ENST00000525078 MTFR1LQ9H019 292 aa6.78□□□□□ -1.32
USP47-204ENST00000525078 AS3MTQ9HBK9 375 aa6.78□□□□□ -1.32
USP47-204ENST00000525078 TRIM39Q9HCM9 518 aa6.78□□□□□ -1.32
USP47-204ENST00000525078 PCDHA4Q9UN74 947 aa6.78□□□□□ -1.32
USP47-204ENST00000525078 APOBEC2Q9Y235 224 aaKnown RBP6.78□□□□□ -1.32
USP47-204ENST00000525078 PPP2R3BQ9Y5P8 575 aa6.78□□□□□ -1.32
USP47-204ENST00000525078 ANO9A1A5B4 782 aa6.77□□□□□ -1.33
USP47-204ENST00000525078 ANKRD34BA5PLL1 514 aa6.77□□□□□ -1.33
USP47-204ENST00000525078 CCER2I3L3R5 266 aa6.77□□□□□ -1.33
USP47-204ENST00000525078 TNFRSF10CO14798 259 aa6.77□□□□□ -1.33
USP47-204ENST00000525078 SPINT1O43278 529 aa6.77□□□□□ -1.33
USP47-204ENST00000525078 SLC26A4O43511 780 aa6.77□□□□□ -1.33
USP47-204ENST00000525078 EFCAB14O75071 495 aa6.77□□□□□ -1.33
USP47-204ENST00000525078 APPP05067 770 aa6.77□□□□□ -1.33
USP47-204ENST00000525078 IGFALSP35858 605 aa6.77□□□□□ -1.33
USP47-204ENST00000525078 ID4P47928 161 aa6.77□□□□□ -1.33
USP47-204ENST00000525078 GRB10Q13322 594 aa6.77□□□□□ -1.33
USP47-204ENST00000525078 EFCAB2Q5VUJ9 269 aa6.77□□□□□ -1.33
USP47-204ENST00000525078 ZNF280DQ6N043 979 aa6.77□□□□□ -1.33
USP47-204ENST00000525078 C1orf228Q6PIY5 440 aa6.77□□□□□ -1.33
USP47-204ENST00000525078 DHX32Q7L7V1 743 aaKnown RBP6.77□□□□□ -1.33
USP47-204ENST00000525078 SLC7A14Q8TBB6 771 aa6.77□□□□□ -1.33
USP47-204ENST00000525078 LRGUKQ96M69 825 aa6.77□□□□□ -1.33
USP47-204ENST00000525078 CRISPLD1Q9H336 500 aa6.77□□□□□ -1.33
USP47-204ENST00000525078 CNNM2Q9H8M5 875 aa6.77□□□□□ -1.33
USP47-204ENST00000525078 SLC52A2Q9HAB3 445 aa6.77□□□□□ -1.33
USP47-204ENST00000525078 LUZP4Q9P127 313 aa6.77□□□□□ -1.33
USP47-204ENST00000525078 ANKRD6Q9Y2G4 727 aa6.77□□□□□ -1.33
USP47-204ENST00000525078 FRMPD2Q68DX3 1309 aaPredicted RBP6.76□□□□□ -1.33
USP47-204ENST00000525078 EXOC5O00471 708 aa6.76□□□□□ -1.33
USP47-204ENST00000525078 APAF1O14727 1248 aa6.76□□□□□ -1.33
USP47-204ENST00000525078 GHRHP01286 108 aa6.76□□□□□ -1.33
USP47-204ENST00000525078 TP53P04637 393 aaPredicted RBP6.76□□□□□ -1.33
USP47-204ENST00000525078 PGRP06401 933 aa6.76□□□□□ -1.33
USP47-204ENST00000525078 ITGAVP06756 1048 aa6.76□□□□□ -1.33
USP47-204ENST00000525078 FGFR1P11362 822 aa6.76□□□□□ -1.33
USP47-204ENST00000525078 COL6A1P12109 1028 aa6.76□□□□□ -1.33
USP47-204ENST00000525078 PHKG2P15735 406 aa6.76□□□□□ -1.33
USP47-204ENST00000525078 RAG1P15918 1043 aa6.76□□□□□ -1.33
USP47-204ENST00000525078 HALP42357 657 aa6.76□□□□□ -1.33
USP47-204ENST00000525078 ATP11AP98196 1134 aa6.76□□□□□ -1.33
USP47-204ENST00000525078 PDE4BQ07343 736 aa6.76□□□□□ -1.33
USP47-204ENST00000525078 ZNF252P-AS1Q0IIN9 211 aa6.76□□□□□ -1.33
USP47-204ENST00000525078 ZNF423Q2M1K9 1284 aa6.76□□□□□ -1.33
USP47-204ENST00000525078 TRIM61Q5EBN2 209 aa6.76□□□□□ -1.33
USP47-204ENST00000525078 EFHC2Q5JST6 749 aa6.76□□□□□ -1.33
USP47-204ENST00000525078 CDCP2Q5VXM1 449 aa6.76□□□□□ -1.33
USP47-204ENST00000525078 ADAMTSL4Q6UY14 1074 aa6.76□□□□□ -1.33
USP47-204ENST00000525078 FGD2Q7Z6J4 655 aa6.76□□□□□ -1.33
USP47-204ENST00000525078 SNIP1Q8TAD8 396 aaKnown RBP6.76□□□□□ -1.33
USP47-204ENST00000525078 BHMTQ93088 406 aa6.76□□□□□ -1.33
USP47-204ENST00000525078 TTC17Q96AE7 1141 aa6.76□□□□□ -1.33
USP47-204ENST00000525078 TNIP3Q96KP6 325 aa6.76□□□□□ -1.33
USP47-204ENST00000525078 HERPUD2Q9BSE4 406 aa6.76□□□□□ -1.33
USP47-204ENST00000525078 INO80BQ9C086 356 aaPredicted RBP6.76□□□□□ -1.33
USP47-204ENST00000525078 ATP13A2Q9NQ11 1180 aa6.76□□□□□ -1.33
USP47-204ENST00000525078 PLCB1Q9NQ66 1216 aa6.76□□□□□ -1.33
USP47-204ENST00000525078 MAN1C1Q9NR34 630 aa6.76□□□□□ -1.33
USP47-204ENST00000525078 ZBTB21Q9ULJ3 1066 aa6.76□□□□□ -1.33
USP47-204ENST00000525078 PNMA8BQ9ULN7 279 aaPredicted RBP6.76□□□□□ -1.33
USP47-204ENST00000525078 GTF2A1LQ9UNN4 478 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms