RNA–Protein interactions for RNA: ENST00000520561.1

CSMD1-208, Transcript of CUB and Sushi multiple domains 1, human

TSL 4

Gene CSMD1, Length 527 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CSMD1-208	ENST00000520561	NOL9	Q5SY16	702 aa	Known RBP	10.43	□□□□□ -0.74
CSMD1-208	ENST00000520561	MAP1S	Q66K74	1059 aa	Predicted RBP	10.43	□□□□□ -0.74
CSMD1-208	ENST00000520561	ARMC9	Q7Z3E5	817 aa		10.43	□□□□□ -0.74
CSMD1-208	ENST00000520561	FAM184A	Q8NB25	1140 aa		10.43	□□□□□ -0.74
CSMD1-208	ENST00000520561	FANCB	Q8NB91	859 aa		10.43	□□□□□ -0.74
CSMD1-208	ENST00000520561	NSUN7	Q8NE18	718 aa	Known RBP	10.43	□□□□□ -0.74
CSMD1-208	ENST00000520561	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	10.43	□□□□□ -0.74
CSMD1-208	ENST00000520561	KLRG1	Q96E93	195 aa		10.43	□□□□□ -0.74
CSMD1-208	ENST00000520561	MAP3K14	Q99558	947 aa		10.43	□□□□□ -0.74
CSMD1-208	ENST00000520561	FEZ1	Q99689	392 aa		10.43	□□□□□ -0.74
CSMD1-208	ENST00000520561	AS3MT	Q9HBK9	375 aa		10.43	□□□□□ -0.74
CSMD1-208	ENST00000520561	CSAD	Q9Y600	493 aa		10.43	□□□□□ -0.74
CSMD1-208	ENST00000520561	OTOF	Q9HC10	1997 aa		10.43	□□□□□ -0.74
CSMD1-208	ENST00000520561	PAPPA2	Q9BXP8	1791 aa		10.42	□□□□□ -0.74
CSMD1-208	ENST00000520561	RAD21	O60216	631 aa		10.42	□□□□□ -0.74
CSMD1-208	ENST00000520561	PARP1	P09874	1014 aa	Known RBP	10.42	□□□□□ -0.74
CSMD1-208	ENST00000520561	GJB2	P29033	226 aa		10.42	□□□□□ -0.74
CSMD1-208	ENST00000520561	CDC27	P30260	824 aa		10.42	□□□□□ -0.74
CSMD1-208	ENST00000520561	JAG1	P78504	1218 aa		10.42	□□□□□ -0.74
CSMD1-208	ENST00000520561	CCDC96	Q2M329	555 aa		10.42	□□□□□ -0.74
CSMD1-208	ENST00000520561	ASPRV1	Q53RT3	343 aa		10.42	□□□□□ -0.74
CSMD1-208	ENST00000520561	TRIM22	Q8IYM9	498 aa		10.42	□□□□□ -0.74
CSMD1-208	ENST00000520561	GMCL1P1	Q8NEA9	526 aa		10.42	□□□□□ -0.74
CSMD1-208	ENST00000520561	ZNF408	Q9H9D4	720 aa		10.42	□□□□□ -0.74
CSMD1-208	ENST00000520561	GPBP1L1	Q9HC44	474 aa	Predicted RBP	10.42	□□□□□ -0.74
CSMD1-208	ENST00000520561	GOPC	Q9HD26	462 aa		10.42	□□□□□ -0.74
CSMD1-208	ENST00000520561	ISY1	Q9ULR0	285 aa	Known RBP	10.42	□□□□□ -0.74
CSMD1-208	ENST00000520561	POLR2A	P24928	1970 aa	Known RBP	10.42	□□□□□ -0.74
CSMD1-208	ENST00000520561	UTRN	P46939	3433 aa		10.41	□□□□□ -0.74
CSMD1-208	ENST00000520561	STK36	Q9NRP7	1315 aa		10.41	□□□□□ -0.74
CSMD1-208	ENST00000520561	USP17L5	A8MUK1	530 aa		10.41	□□□□□ -0.74
CSMD1-208	ENST00000520561	JAK2	O60674	1132 aa		10.41	□□□□□ -0.74
CSMD1-208	ENST00000520561	PDHB	P11177	359 aa		10.41	□□□□□ -0.74
CSMD1-208	ENST00000520561	IFNAR1	P17181	557 aa		10.41	□□□□□ -0.74
CSMD1-208	ENST00000520561	PDC	P20941	246 aa		10.41	□□□□□ -0.74
CSMD1-208	ENST00000520561	ADD1	P35611	737 aa	Known RBP	10.41	□□□□□ -0.74
CSMD1-208	ENST00000520561	MAP3K9	P80192	1104 aa		10.41	□□□□□ -0.74
CSMD1-208	ENST00000520561	AKAP17A	Q02040	695 aa	Known RBP	10.41	□□□□□ -0.74
CSMD1-208	ENST00000520561	SSRP1	Q08945	709 aa	Known RBP	10.41	□□□□□ -0.74
CSMD1-208	ENST00000520561	GPATCH4	Q5T3I0	446 aa	Known RBP	10.41	□□□□□ -0.74
CSMD1-208	ENST00000520561	SLFN13	Q68D06	897 aa		10.41	□□□□□ -0.74
CSMD1-208	ENST00000520561	CHADL	Q6NUI6	762 aa		10.41	□□□□□ -0.74
CSMD1-208	ENST00000520561	TMTC3	Q6ZXV5	915 aa		10.41	□□□□□ -0.74
CSMD1-208	ENST00000520561	SMARCC2	Q8TAQ2	1214 aa		10.41	□□□□□ -0.74
CSMD1-208	ENST00000520561	DCAF4	Q8WV16	495 aa		10.41	□□□□□ -0.74
CSMD1-208	ENST00000520561	MKL1	Q969V6	931 aa		10.41	□□□□□ -0.74
CSMD1-208	ENST00000520561	DDX11	Q96FC9	970 aa		10.41	□□□□□ -0.74
CSMD1-208	ENST00000520561	LZTS2	Q9BRK4	669 aa		10.41	□□□□□ -0.74
CSMD1-208	ENST00000520561	CIZ1	Q9ULV3	898 aa	Predicted RBP	10.41	□□□□□ -0.74
CSMD1-208	ENST00000520561	FZD1	Q9UP38	647 aa		10.41	□□□□□ -0.74
CSMD1-208	ENST00000520561	TMX2	Q9Y320	296 aa		10.41	□□□□□ -0.74
CSMD1-208	ENST00000520561	CNTNAP5	Q8WYK1	1306 aa		10.4	□□□□□ -0.74
CSMD1-208	ENST00000520561	USP2	O75604	605 aa	Predicted RBP	10.4	□□□□□ -0.74
CSMD1-208	ENST00000520561	PLEKHA8P1	O95397	391 aa		10.4	□□□□□ -0.74
CSMD1-208	ENST00000520561	FMNL1	O95466	1100 aa	Predicted RBP	10.4	□□□□□ -0.74
CSMD1-208	ENST00000520561	CTDNEP1	O95476	244 aa		10.4	□□□□□ -0.74
CSMD1-208	ENST00000520561	NDUFB10	O96000	172 aa		10.4	□□□□□ -0.74
CSMD1-208	ENST00000520561	SLC1A4	P43007	532 aa		10.4	□□□□□ -0.74
CSMD1-208	ENST00000520561	ZNF543	Q08ER8	600 aa		10.4	□□□□□ -0.74
CSMD1-208	ENST00000520561	VGLL4	Q14135	290 aa		10.4	□□□□□ -0.74
CSMD1-208	ENST00000520561	DLK2	Q6UY11	383 aa		10.4	□□□□□ -0.74
CSMD1-208	ENST00000520561	ANKRD13A	Q8IZ07	590 aa		10.4	□□□□□ -0.74
CSMD1-208	ENST00000520561	WASF1	Q92558	559 aa		10.4	□□□□□ -0.74
CSMD1-208	ENST00000520561	ZKSCAN4	Q969J2	545 aa	Predicted RBP	10.4	□□□□□ -0.74
CSMD1-208	ENST00000520561	SLC26A6	Q9BXS9	759 aa		10.4	□□□□□ -0.74
CSMD1-208	ENST00000520561	RNF26	Q9BY78	433 aa	Predicted RBP	10.4	□□□□□ -0.74
CSMD1-208	ENST00000520561	VCPKMT	Q9H867	229 aa		10.4	□□□□□ -0.74
CSMD1-208	ENST00000520561	FAM217B	Q9NTX9	383 aa	Predicted RBP	10.4	□□□□□ -0.74
CSMD1-208	ENST00000520561	RBM27	Q9P2N5	1060 aa	Known RBP	10.4	□□□□□ -0.74
CSMD1-208	ENST00000520561	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	10.4	□□□□□ -0.74
CSMD1-208	ENST00000520561	ORC3	Q9UBD5	711 aa	Predicted RBP	10.4	□□□□□ -0.74
CSMD1-208	ENST00000520561	FRMPD2	Q68DX3	1309 aa	Predicted RBP	10.39	□□□□□ -0.75
CSMD1-208	ENST00000520561		A0A1W2PRG0	241 aa		10.39	□□□□□ -0.75
CSMD1-208	ENST00000520561	PALM3	A6NDB9	673 aa	Predicted RBP	10.39	□□□□□ -0.75
CSMD1-208	ENST00000520561		F5H6K3	240 aa		10.39	□□□□□ -0.75
CSMD1-208	ENST00000520561	TRAF5	O00463	557 aa		10.39	□□□□□ -0.75
CSMD1-208	ENST00000520561	DEXI	O95424	95 aa		10.39	□□□□□ -0.75
CSMD1-208	ENST00000520561	SNHG28	P0DPA3	235 aa		10.39	□□□□□ -0.75
CSMD1-208	ENST00000520561	PDIA4	P13667	645 aa	Known RBP	10.39	□□□□□ -0.75
CSMD1-208	ENST00000520561	PTPRA	P18433	802 aa		10.39	□□□□□ -0.75
CSMD1-208	ENST00000520561	ECE1	P42892	770 aa		10.39	□□□□□ -0.75
CSMD1-208	ENST00000520561	USP14	P54578	494 aa		10.39	□□□□□ -0.75
CSMD1-208	ENST00000520561	FKBP1B	P68106	108 aa		10.39	□□□□□ -0.75
CSMD1-208	ENST00000520561	NUCB2	P80303	420 aa		10.39	□□□□□ -0.75
CSMD1-208	ENST00000520561	KLRC3	Q07444	240 aa		10.39	□□□□□ -0.75
CSMD1-208	ENST00000520561	ZYX	Q15942	572 aa	Known RBP	10.39	□□□□□ -0.75
CSMD1-208	ENST00000520561	NTRK3	Q16288	839 aa		10.39	□□□□□ -0.75
CSMD1-208	ENST00000520561	MAP3K11	Q16584	847 aa		10.39	□□□□□ -0.75
CSMD1-208	ENST00000520561	USP17L2	Q6R6M4	530 aa		10.39	□□□□□ -0.75
CSMD1-208	ENST00000520561	RASGRP2	Q7LDG7	609 aa		10.39	□□□□□ -0.75
CSMD1-208	ENST00000520561	CCDC84	Q86UT8	332 aa	Predicted RBP	10.39	□□□□□ -0.75
CSMD1-208	ENST00000520561	SIAH1	Q8IUQ4	282 aa		10.39	□□□□□ -0.75
CSMD1-208	ENST00000520561	ACER1	Q8TDN7	264 aa		10.39	□□□□□ -0.75
CSMD1-208	ENST00000520561	PHKB	Q93100	1093 aa		10.39	□□□□□ -0.75
CSMD1-208	ENST00000520561	GMCL1	Q96IK5	515 aa		10.39	□□□□□ -0.75
CSMD1-208	ENST00000520561	WDR18	Q9BV38	432 aa		10.39	□□□□□ -0.75
CSMD1-208	ENST00000520561	CHMP5	Q9NZZ3	219 aa		10.39	□□□□□ -0.75
CSMD1-208	ENST00000520561	MAD2L2	Q9UI95	211 aa		10.39	□□□□□ -0.75
CSMD1-208	ENST00000520561	SNCAIP	Q9Y6H5	919 aa		10.39	□□□□□ -0.75
CSMD1-208	ENST00000520561	SRCAP	Q6ZRS2	3230 aa		10.38	□□□□□ -0.75

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