RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 DNAJC18Q9H819 358 aa18.52■□□□□ 0.56
NUP54-214ENST00000514307 PSME4Q14997 1843 aa18.51■□□□□ 0.55
NUP54-214ENST00000514307 KRT85P78386 507 aa18.51■□□□□ 0.55
NUP54-214ENST00000514307 FUT2Q10981 343 aa18.51■□□□□ 0.55
NUP54-214ENST00000514307 GPATCH4Q5T3I0 446 aaKnown RBP18.51■□□□□ 0.55
NUP54-214ENST00000514307 SRBD1Q8N5C6 995 aaKnown RBP18.51■□□□□ 0.55
NUP54-214ENST00000514307 SCAND2PQ9GZW5 306 aaPredicted RBP18.51■□□□□ 0.55
NUP54-214ENST00000514307 PGAP2Q9UHJ9 254 aa18.51■□□□□ 0.55
NUP54-214ENST00000514307 MAD2L2Q9UI95 211 aa18.51■□□□□ 0.55
NUP54-214ENST00000514307 NAV1Q8NEY1 1877 aa18.51■□□□□ 0.55
NUP54-214ENST00000514307 PPFIA3O75145 1194 aa18.5■□□□□ 0.55
NUP54-214ENST00000514307 PRPF40AO75400 957 aaKnown RBP18.5■□□□□ 0.55
NUP54-214ENST00000514307 PLEKHA8P1O95397 391 aa18.5■□□□□ 0.55
NUP54-214ENST00000514307 EEF2P13639 858 aaKnown RBP18.5■□□□□ 0.55
NUP54-214ENST00000514307 EPS15P42566 896 aa18.5■□□□□ 0.55
NUP54-214ENST00000514307 SEPT2Q15019 361 aa18.5■□□□□ 0.55
NUP54-214ENST00000514307 SUPT20HL1Q3ZLR7 823 aa18.5■□□□□ 0.55
NUP54-214ENST00000514307 KRT40Q6A162 431 aa18.5■□□□□ 0.55
NUP54-214ENST00000514307 FERMT3Q86UX7 667 aa18.5■□□□□ 0.55
NUP54-214ENST00000514307 ARHGEF10LQ9HCE6 1279 aa18.5■□□□□ 0.55
NUP54-214ENST00000514307 FAM196BA6NMK8 535 aa18.49■□□□□ 0.55
NUP54-214ENST00000514307 GH2P01242 217 aa18.49■□□□□ 0.55
NUP54-214ENST00000514307 ASNSP08243 561 aa18.49■□□□□ 0.55
NUP54-214ENST00000514307 CAP2P40123 477 aa18.49■□□□□ 0.55
NUP54-214ENST00000514307 GUCY1B3Q02153 619 aa18.49■□□□□ 0.55
NUP54-214ENST00000514307 ICA1Q05084 483 aa18.49■□□□□ 0.55
NUP54-214ENST00000514307 RESTQ13127 1097 aa18.49■□□□□ 0.55
NUP54-214ENST00000514307 ANGEL2Q5VTE6 544 aaKnown RBP18.49■□□□□ 0.55
NUP54-214ENST00000514307 MIGA2Q7L4E1 593 aa18.49■□□□□ 0.55
NUP54-214ENST00000514307 CMTR1Q8N1G2 835 aaKnown RBP18.49■□□□□ 0.55
NUP54-214ENST00000514307 DCAF4Q8WV16 495 aa18.49■□□□□ 0.55
NUP54-214ENST00000514307 DCPSQ96C86 337 aaKnown RBP18.49■□□□□ 0.55
NUP54-214ENST00000514307 RRP36Q96EU6 259 aaKnown RBP18.49■□□□□ 0.55
NUP54-214ENST00000514307 SPZ1Q9BXG8 430 aa18.49■□□□□ 0.55
NUP54-214ENST00000514307 SH2D4AQ9H788 454 aa18.49■□□□□ 0.55
NUP54-214ENST00000514307 BRMS1Q9HCU9 246 aa18.49■□□□□ 0.55
NUP54-214ENST00000514307 SH3GLB2Q9NR46 395 aa18.49■□□□□ 0.55
NUP54-214ENST00000514307 LAMB1P07942 1786 aa18.49■□□□□ 0.55
NUP54-214ENST00000514307 MYH1P12882 1939 aa18.49■□□□□ 0.55
NUP54-214ENST00000514307 USP17L5A8MUK1 530 aa18.48■□□□□ 0.55
NUP54-214ENST00000514307 TRAK2O60296 914 aa18.48■□□□□ 0.55
NUP54-214ENST00000514307 EGFRP00533 1210 aa18.48■□□□□ 0.55
NUP54-214ENST00000514307 FOSBP53539 338 aa18.48■□□□□ 0.55
NUP54-214ENST00000514307 FOXD4L6Q3SYB3 417 aaPredicted RBP18.48■□□□□ 0.55
NUP54-214ENST00000514307 FOXD4L3Q6VB84 417 aaPredicted RBP18.48■□□□□ 0.55
NUP54-214ENST00000514307 MTMR7Q9Y216 660 aa18.48■□□□□ 0.55
NUP54-214ENST00000514307 PITPNM2Q9BZ72 1349 aa18.48■□□□□ 0.55
NUP54-214ENST00000514307 ZNF646O15015 1829 aaPredicted RBP18.47■□□□□ 0.55
NUP54-214ENST00000514307 CTNND1O60716 968 aaKnown RBP18.47■□□□□ 0.55
NUP54-214ENST00000514307 GDF11O95390 407 aa18.47■□□□□ 0.55
NUP54-214ENST00000514307 SNHG28P0DPA3 235 aa18.47■□□□□ 0.55
NUP54-214ENST00000514307 PDHBP11177 359 aa18.47■□□□□ 0.55
NUP54-214ENST00000514307 SCG2P13521 617 aa18.47■□□□□ 0.55
NUP54-214ENST00000514307 CALML3P27482 149 aa18.47■□□□□ 0.55
NUP54-214ENST00000514307 DNM1Q05193 864 aaKnown RBP18.47■□□□□ 0.55
NUP54-214ENST00000514307 PFKFB3Q16875 520 aaPredicted RBP18.47■□□□□ 0.55
NUP54-214ENST00000514307 SLFN13Q68D06 897 aa18.47■□□□□ 0.55
NUP54-214ENST00000514307 USP17L2Q6R6M4 530 aa18.47■□□□□ 0.55
NUP54-214ENST00000514307 USP50Q70EL3 339 aaPredicted RBP18.47■□□□□ 0.55
NUP54-214ENST00000514307 STAG2Q8N3U4 1231 aa18.47■□□□□ 0.55
NUP54-214ENST00000514307 GMCL1P1Q8NEA9 526 aa18.47■□□□□ 0.55
NUP54-214ENST00000514307 CCDC12Q8WUD4 166 aaPredicted RBP18.47■□□□□ 0.55
NUP54-214ENST00000514307 TEPSINQ96N21 525 aa18.47■□□□□ 0.55
NUP54-214ENST00000514307 ZNF341Q9BYN7 854 aa18.47■□□□□ 0.55
NUP54-214ENST00000514307 FOXP1Q9H334 677 aaPredicted RBP18.47■□□□□ 0.55
NUP54-214ENST00000514307 SEC63Q9UGP8 760 aaKnown RBP18.47■□□□□ 0.55
NUP54-214ENST00000514307 MMP1P03956 469 aa18.46■□□□□ 0.55
NUP54-214ENST00000514307 ZNF543Q08ER8 600 aa18.46■□□□□ 0.55
NUP54-214ENST00000514307 PKN1Q16512 942 aa18.46■□□□□ 0.55
NUP54-214ENST00000514307 OTUD7BQ6GQQ9 843 aa18.46■□□□□ 0.55
NUP54-214ENST00000514307 GALNT17Q6IS24 598 aa18.46■□□□□ 0.55
NUP54-214ENST00000514307 USP48Q86UV5 1035 aa18.46■□□□□ 0.55
NUP54-214ENST00000514307 LRRC47Q8N1G4 583 aaKnown RBP18.46■□□□□ 0.55
NUP54-214ENST00000514307 ZC3H15Q8WU90 426 aaKnown RBP18.46■□□□□ 0.55
NUP54-214ENST00000514307 L3MBTL3Q96JM7 780 aaPredicted RBP18.46■□□□□ 0.55
NUP54-214ENST00000514307 GOPCQ9HD26 462 aa18.46■□□□□ 0.55
NUP54-214ENST00000514307 LMBRD1Q9NUN5 540 aa18.46■□□□□ 0.55
NUP54-214ENST00000514307 FOCADQ5VW36 1801 aa18.46■□□□□ 0.55
NUP54-214ENST00000514307 IQCA1LA6NCM1 817 aa18.45■□□□□ 0.54
NUP54-214ENST00000514307 GLTPD2A6NH11 291 aa18.45■□□□□ 0.54
NUP54-214ENST00000514307 F5H6K3 240 aa18.45■□□□□ 0.54
NUP54-214ENST00000514307 GOLGA8HP0CJ92 632 aa18.45■□□□□ 0.54
NUP54-214ENST00000514307 U2AF2P26368 475 aaKnown RBP eCLIP18.45■□□□□ 0.545e-7■□□□□ 8.9
NUP54-214ENST00000514307 GUCY1A2P33402 732 aa18.45■□□□□ 0.54
NUP54-214ENST00000514307 SLC1A4P43007 532 aa18.45■□□□□ 0.54
NUP54-214ENST00000514307 KIF23Q02241 960 aaPredicted RBP18.45■□□□□ 0.54
NUP54-214ENST00000514307 KLRC3Q07444 240 aa18.45■□□□□ 0.54
NUP54-214ENST00000514307 SIAH1Q8IUQ4 282 aa18.45■□□□□ 0.54
NUP54-214ENST00000514307 TMEM87AQ8NBN3 555 aa18.45■□□□□ 0.54
NUP54-214ENST00000514307 TRPM4Q8TD43 1214 aa18.45■□□□□ 0.54
NUP54-214ENST00000514307 GMCL1Q96IK5 515 aa18.45■□□□□ 0.54
NUP54-214ENST00000514307 AIFM3Q96NN9 605 aa18.45■□□□□ 0.54
NUP54-214ENST00000514307 RIOX1Q9H6W3 641 aa18.45■□□□□ 0.54
NUP54-214ENST00000514307 TFIP11Q9UBB9 837 aaKnown RBP18.45■□□□□ 0.54
NUP54-214ENST00000514307 ZBTB21Q9ULJ3 1066 aa18.45■□□□□ 0.54
NUP54-214ENST00000514307 CNPY2Q9Y2B0 182 aa18.45■□□□□ 0.54
NUP54-214ENST00000514307 DDX49Q9Y6V7 483 aaKnown RBP18.45■□□□□ 0.54
NUP54-214ENST00000514307 DDX60LQ5H9U9 1706 aaKnown RBP18.45■□□□□ 0.54
NUP54-214ENST00000514307 GOLGA6L4A6NEF3 574 aa18.44■□□□□ 0.54
NUP54-214ENST00000514307 hCG_1984214I3L0E3 225 aa18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms