RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 AFMP43652 599 aa6.06□□□□□ -1.44
NUP54-212ENST00000513248 SOX9P48436 509 aa6.06□□□□□ -1.44
NUP54-212ENST00000513248 ZP2Q05996 745 aa6.06□□□□□ -1.44
NUP54-212ENST00000513248 NKPD1Q17RQ9 610 aa6.06□□□□□ -1.44
NUP54-212ENST00000513248 SIAH1Q8IUQ4 282 aa6.06□□□□□ -1.44
NUP54-212ENST00000513248 MRPL41Q8IXM3 137 aaKnown RBP6.06□□□□□ -1.44
NUP54-212ENST00000513248 MFSD2AQ8NA29 543 aa6.06□□□□□ -1.44
NUP54-212ENST00000513248 TJP2Q9UDY2 1190 aa6.06□□□□□ -1.44
NUP54-212ENST00000513248 CORINQ9Y5Q5 1042 aa6.06□□□□□ -1.44
NUP54-212ENST00000513248 PITPNM2Q9BZ72 1349 aa6.05□□□□□ -1.44
NUP54-212ENST00000513248 CEP164Q9UPV0 1460 aa6.05□□□□□ -1.44
NUP54-212ENST00000513248 KRTAP9-7A8MTY7 169 aa6.05□□□□□ -1.44
NUP54-212ENST00000513248 IQCJ-SCHIP1C9J366 451 aaPredicted RBP6.05□□□□□ -1.44
NUP54-212ENST00000513248 DNAJA2O60884 412 aa6.05□□□□□ -1.44
NUP54-212ENST00000513248 TNNI2P48788 182 aa6.05□□□□□ -1.44
NUP54-212ENST00000513248 MLANAQ16655 118 aa6.05□□□□□ -1.44
NUP54-212ENST00000513248 CWF19L2Q2TBE0 894 aaKnown RBP6.05□□□□□ -1.44
NUP54-212ENST00000513248 SLC6A19Q695T7 634 aa6.05□□□□□ -1.44
NUP54-212ENST00000513248 SLC43A3Q8NBI5 491 aa6.05□□□□□ -1.44
NUP54-212ENST00000513248 ZSCAN18Q8TBC5 510 aaPredicted RBP6.05□□□□□ -1.44
NUP54-212ENST00000513248 XAGE3Q8WTP9 111 aa6.05□□□□□ -1.44
NUP54-212ENST00000513248 ACSF2Q96CM8 615 aaPredicted RBP6.05□□□□□ -1.44
NUP54-212ENST00000513248 TMEM87BQ96K49 555 aa6.05□□□□□ -1.44
NUP54-212ENST00000513248 DPH2Q9BQC3 489 aaPredicted RBP6.05□□□□□ -1.44
NUP54-212ENST00000513248 BRMS1Q9HCU9 246 aa6.05□□□□□ -1.44
NUP54-212ENST00000513248 PRDM7Q9NQW5 492 aa6.05□□□□□ -1.44
NUP54-212ENST00000513248 PRDM5Q9NQX1 630 aaPredicted RBP6.05□□□□□ -1.44
NUP54-212ENST00000513248 FANCD2Q9BXW9 1451 aa6.04□□□□□ -1.44
NUP54-212ENST00000513248 MRC2Q9UBG0 1479 aa6.04□□□□□ -1.44
NUP54-212ENST00000513248 TLR3O15455 904 aaKnown RBP6.04□□□□□ -1.44
NUP54-212ENST00000513248 GLI1P08151 1106 aa6.04□□□□□ -1.44
NUP54-212ENST00000513248 PLCG1P19174 1290 aa6.04□□□□□ -1.44
NUP54-212ENST00000513248 CLCQ05315 142 aa6.04□□□□□ -1.44
NUP54-212ENST00000513248 APOBRQ0VD83 1088 aa6.04□□□□□ -1.44
NUP54-212ENST00000513248 LETMD1Q6P1Q0 360 aa6.04□□□□□ -1.44
NUP54-212ENST00000513248 C1QL4Q86Z23 238 aa6.04□□□□□ -1.44
NUP54-212ENST00000513248 MCATQ8IVS2 390 aaKnown RBP6.04□□□□□ -1.44
NUP54-212ENST00000513248 GPRASP2Q96D09 838 aa6.04□□□□□ -1.44
NUP54-212ENST00000513248 SPATA32Q96LK8 384 aa6.04□□□□□ -1.44
NUP54-212ENST00000513248 GMLQ99445 158 aa6.04□□□□□ -1.44
NUP54-212ENST00000513248 TPX2Q9ULW0 747 aaKnown RBP6.04□□□□□ -1.44
NUP54-212ENST00000513248 MAPK8IP1Q9UQF2 711 aa6.04□□□□□ -1.44
NUP54-212ENST00000513248 MEIS3P2A8K0S8 358 aa6.03□□□□□ -1.44
NUP54-212ENST00000513248 GNAT3A8MTJ3 354 aa6.03□□□□□ -1.44
NUP54-212ENST00000513248 GRIN3BO60391 1043 aa6.03□□□□□ -1.44
NUP54-212ENST00000513248 HTR3BO95264 441 aa6.03□□□□□ -1.44
NUP54-212ENST00000513248 CFPP27918 469 aa6.03□□□□□ -1.44
NUP54-212ENST00000513248 COL9A2Q14055 689 aaPredicted RBP6.03□□□□□ -1.44
NUP54-212ENST00000513248 SEZ6Q53EL9 994 aa6.03□□□□□ -1.44
NUP54-212ENST00000513248 RBBP8NLQ8NC74 664 aaPredicted RBP6.03□□□□□ -1.44
NUP54-212ENST00000513248 NKD1Q969G9 470 aa6.03□□□□□ -1.44
NUP54-212ENST00000513248 C8orf37Q96NL8 207 aa6.03□□□□□ -1.44
NUP54-212ENST00000513248 GINM1Q9NU53 330 aa6.03□□□□□ -1.44
NUP54-212ENST00000513248 KIF21AQ7Z4S6 1674 aa6.03□□□□□ -1.44
NUP54-212ENST00000513248 THOC2Q8NI27 1593 aaKnown RBP6.02□□□□□ -1.45
NUP54-212ENST00000513248 ATF4P18848 351 aaPredicted RBP6.02□□□□□ -1.45
NUP54-212ENST00000513248 SFRP5Q5T4F7 317 aa6.02□□□□□ -1.45
NUP54-212ENST00000513248 ZNF746Q6NUN9 644 aaPredicted RBP6.02□□□□□ -1.45
NUP54-212ENST00000513248 C22orf34Q6ZV56 151 aa6.02□□□□□ -1.45
NUP54-212ENST00000513248 ANKLE2Q86XL3 938 aa6.02□□□□□ -1.45
NUP54-212ENST00000513248 FAM13CQ8NE31 585 aa6.02□□□□□ -1.45
NUP54-212ENST00000513248 RIN3Q8TB24 985 aa6.02□□□□□ -1.45
NUP54-212ENST00000513248 LIN37Q96GY3 246 aaPredicted RBP6.02□□□□□ -1.45
NUP54-212ENST00000513248 SEC16BQ96JE7 1060 aa6.02□□□□□ -1.45
NUP54-212ENST00000513248 CCSER2Q9H7U1 834 aa6.02□□□□□ -1.45
NUP54-212ENST00000513248 REV1Q9UBZ9 1251 aa6.02□□□□□ -1.45
NUP54-212ENST00000513248 RAPGEFL1Q9UHV5 662 aa6.02□□□□□ -1.45
NUP54-212ENST00000513248 ZNRF3Q9ULT6 936 aa6.02□□□□□ -1.45
NUP54-212ENST00000513248 PCDHB14Q9Y5E9 798 aa6.02□□□□□ -1.45
NUP54-212ENST00000513248 CCDC88BA6NC98 1476 aa6.02□□□□□ -1.45
NUP54-212ENST00000513248 CFTRP13569 1480 aa6.02□□□□□ -1.45
NUP54-212ENST00000513248 SLC22A31A6NKX4 558 aa6.01□□□□□ -1.45
NUP54-212ENST00000513248 ZNF165P49910 485 aa6.01□□□□□ -1.45
NUP54-212ENST00000513248 YARSP54577 528 aaKnown RBP6.01□□□□□ -1.45
NUP54-212ENST00000513248 FYB2Q5VWT5 728 aa6.01□□□□□ -1.45
NUP54-212ENST00000513248 LRRC56Q8IYG6 542 aaPredicted RBP6.01□□□□□ -1.45
NUP54-212ENST00000513248 SLFN12Q8IYM2 578 aa6.01□□□□□ -1.45
NUP54-212ENST00000513248 PPP1R13LQ8WUF5 828 aa6.01□□□□□ -1.45
NUP54-212ENST00000513248 KIRREL1Q96J84 757 aa6.01□□□□□ -1.45
NUP54-212ENST00000513248 CNTNAP4Q9C0A0 1308 aa6□□□□□ -1.45
NUP54-212ENST00000513248 PRR33A8MZF0 331 aa6□□□□□ -1.45
NUP54-212ENST00000513248 UPK3BL1B0FP48 263 aa6□□□□□ -1.45
NUP54-212ENST00000513248 UPK3BL2E5RIL1 263 aa6□□□□□ -1.45
NUP54-212ENST00000513248 ZNF865P0CJ78 1059 aaPredicted RBP6□□□□□ -1.45
NUP54-212ENST00000513248 CYP7A1P22680 504 aa6□□□□□ -1.45
NUP54-212ENST00000513248 ETV3P41162 512 aa6□□□□□ -1.45
NUP54-212ENST00000513248 ZC3H6P61129 1189 aaKnown RBP6□□□□□ -1.45
NUP54-212ENST00000513248 CDCP2Q5VXM1 449 aa6□□□□□ -1.45
NUP54-212ENST00000513248 MPZL3Q6UWV2 235 aa6□□□□□ -1.45
NUP54-212ENST00000513248 LCNL1Q6ZST4 164 aa6□□□□□ -1.45
NUP54-212ENST00000513248 CDH24Q86UP0 819 aa6□□□□□ -1.45
NUP54-212ENST00000513248 MFSD4AQ8N468 514 aa6□□□□□ -1.45
NUP54-212ENST00000513248 DNAJB8Q8NHS0 232 aa6□□□□□ -1.45
NUP54-212ENST00000513248 CYB5D2Q8WUJ1 264 aa6□□□□□ -1.45
NUP54-212ENST00000513248 CCDC120Q96HB5 630 aa6□□□□□ -1.45
NUP54-212ENST00000513248 KLHL3Q9UH77 587 aa6□□□□□ -1.45
NUP54-212ENST00000513248 FAM155AB1AL88 458 aaPredicted RBP5.99□□□□□ -1.45
NUP54-212ENST00000513248 CHURC1-FNTBB4DL54 471 aa5.99□□□□□ -1.45
NUP54-212ENST00000513248 FGRP09769 529 aa5.99□□□□□ -1.45
NUP54-212ENST00000513248 GDNFP39905 211 aa5.99□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms