RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 TMEM67Q5HYA8 995 aa34.8■■■■□ 3.16
LIMCH1-211ENST00000509638 SH3D19Q5HYK7 790 aa34.8■■■■□ 3.16
LIMCH1-211ENST00000509638 GADL1Q6ZQY3 521 aa34.8■■■■□ 3.16
LIMCH1-211ENST00000509638 DGKHQ86XP1 1220 aa34.8■■■■□ 3.16
LIMCH1-211ENST00000509638 MKL1Q969V6 931 aa34.8■■■■□ 3.16
LIMCH1-211ENST00000509638 TTC14Q96N46 770 aa34.8■■■■□ 3.16
LIMCH1-211ENST00000509638 LRRC2Q9BYS8 371 aa34.8■■■■□ 3.16
LIMCH1-211ENST00000509638 WDR19Q8NEZ3 1342 aa34.8■■■■□ 3.16
LIMCH1-211ENST00000509638 MOGSQ13724 837 aa34.79■■■■□ 3.16
LIMCH1-211ENST00000509638 USP17L2Q6R6M4 530 aa34.79■■■■□ 3.16
LIMCH1-211ENST00000509638 IL17RAQ96F46 866 aa34.79■■■■□ 3.16
LIMCH1-211ENST00000509638 TMEM47Q9BQJ4 181 aa34.79■■■■□ 3.16
LIMCH1-211ENST00000509638 TM6SF1Q9BZW5 370 aa34.79■■■■□ 3.16
LIMCH1-211ENST00000509638 VCPKMTQ9H867 229 aa34.79■■■■□ 3.16
LIMCH1-211ENST00000509638 GOPCQ9HD26 462 aa34.79■■■■□ 3.16
LIMCH1-211ENST00000509638 EMILIN3Q9NT22 766 aa34.79■■■■□ 3.16
LIMCH1-211ENST00000509638 TMOD4Q9NZQ9 345 aa34.79■■■■□ 3.16
LIMCH1-211ENST00000509638 SYNPO2Q9UMS6 1093 aa34.79■■■■□ 3.16
LIMCH1-211ENST00000509638 RAD21O60216 631 aa34.79■■■■□ 3.16
LIMCH1-211ENST00000509638 TOP1P11387 765 aaKnown RBP34.79■■■■□ 3.16
LIMCH1-211ENST00000509638 SREBF2Q12772 1141 aa34.79■■■■□ 3.16
LIMCH1-211ENST00000509638 IFIT1BQ5T764 474 aaKnown RBP34.79■■■■□ 3.16
LIMCH1-211ENST00000509638 TMEM87BQ96K49 555 aa34.79■■■■□ 3.16
LIMCH1-211ENST00000509638 UPF3BQ9BZI7 483 aaKnown RBP34.79■■■■□ 3.16
LIMCH1-211ENST00000509638 RPS6KB1P23443 525 aa34.78■■■■□ 3.16
LIMCH1-211ENST00000509638 EXOSC10Q01780 885 aaKnown RBP34.78■■■■□ 3.16
LIMCH1-211ENST00000509638 TBC1D32Q96NH3 1257 aa34.78■■■■□ 3.16
LIMCH1-211ENST00000509638 MTA3Q9BTC8 594 aa34.78■■■■□ 3.16
LIMCH1-211ENST00000509638 ZSWIM6Q9HCJ5 1215 aa34.78■■■■□ 3.16
LIMCH1-211ENST00000509638 GPHNQ9NQX3 736 aaPredicted RBP34.78■■■■□ 3.16
LIMCH1-211ENST00000509638 SH2B2O14492 632 aaPredicted RBP34.77■■■■□ 3.16
LIMCH1-211ENST00000509638 WTAPQ15007 396 aa34.77■■■■□ 3.16
LIMCH1-211ENST00000509638 KIAA1755Q5JYT7 1200 aa34.77■■■■□ 3.16
LIMCH1-211ENST00000509638 FASTKD5Q7L8L6 764 aaKnown RBP34.77■■■■□ 3.16
LIMCH1-211ENST00000509638 SPICE1Q8N0Z3 855 aa34.77■■■■□ 3.16
LIMCH1-211ENST00000509638 PROCA1Q8NCQ7 364 aaPredicted RBP34.77■■■■□ 3.16
LIMCH1-211ENST00000509638 IGDCC4Q8TDY8 1250 aa34.77■■■■□ 3.16
LIMCH1-211ENST00000509638 C12orf42Q96LP6 360 aa34.77■■■■□ 3.16
LIMCH1-211ENST00000509638 TESPA1A2RU30 521 aaPredicted RBP34.76■■■■□ 3.16
LIMCH1-211ENST00000509638 VCAM1P19320 739 aa34.76■■■■□ 3.16
LIMCH1-211ENST00000509638 MAP2K2P36507 400 aa34.76■■■■□ 3.16
LIMCH1-211ENST00000509638 RUFY3Q7L099 469 aa34.76■■■■□ 3.16
LIMCH1-211ENST00000509638 ANKS1AQ92625 1134 aa34.76■■■■□ 3.16
LIMCH1-211ENST00000509638 KAT14Q9H8E8 782 aa34.76■■■■□ 3.16
LIMCH1-211ENST00000509638 LY9Q9HBG7 655 aa34.76■■■■□ 3.16
LIMCH1-211ENST00000509638 SENP2Q9HC62 589 aa34.76■■■■□ 3.16
LIMCH1-211ENST00000509638 CYP46A1Q9Y6A2 500 aa34.76■■■■□ 3.16
LIMCH1-211ENST00000509638 TREML2Q5T2D2 321 aa34.75■■■■□ 3.15
LIMCH1-211ENST00000509638 GMCL1P1Q8NEA9 526 aa34.75■■■■□ 3.15
LIMCH1-211ENST00000509638 LPAR1Q92633 364 aa34.75■■■■□ 3.15
LIMCH1-211ENST00000509638 NDUFB10O96000 172 aa34.74■■■■□ 3.15
LIMCH1-211ENST00000509638 DNAJC5GQ8N7S2 189 aa34.74■■■■□ 3.15
LIMCH1-211ENST00000509638 PTPN18Q99952 460 aa34.74■■■■□ 3.15
LIMCH1-211ENST00000509638 F5H6K3 240 aa34.74■■■■□ 3.15
LIMCH1-211ENST00000509638 KLRC3Q07444 240 aa34.74■■■■□ 3.15
LIMCH1-211ENST00000509638 PNMA1Q8ND90 353 aa34.74■■■■□ 3.15
LIMCH1-211ENST00000509638 AGTPBP1Q9UPW5 1226 aa34.74■■■■□ 3.15
LIMCH1-211ENST00000509638 MTMR7Q9Y216 660 aa34.74■■■■□ 3.15
LIMCH1-211ENST00000509638 PARP14Q460N5 1801 aa34.73■■■■□ 3.15
LIMCH1-211ENST00000509638 IGF2BP3O00425 579 aaKnown RBP eCLIP34.73■■■■□ 3.15
LIMCH1-211ENST00000509638 INHBEP58166 350 aa34.73■■■■□ 3.15
LIMCH1-211ENST00000509638 RASGRP2Q7LDG7 609 aa34.73■■■■□ 3.15
LIMCH1-211ENST00000509638 BTBD19C9JJ37 291 aa34.72■■■■□ 3.15
LIMCH1-211ENST00000509638 GPAT2Q6NUI2 795 aa34.72■■■■□ 3.15
LIMCH1-211ENST00000509638 FGD1P98174 961 aa34.71■■■■□ 3.15
LIMCH1-211ENST00000509638 FAM43AQ8N2R8 423 aa34.71■■■■□ 3.15
LIMCH1-211ENST00000509638 CHMP4CQ96CF2 233 aa34.71■■■■□ 3.15
LIMCH1-211ENST00000509638 KIF2CQ99661 725 aa34.71■■■■□ 3.15
LIMCH1-211ENST00000509638 TM4SF4P48230 202 aa34.7■■■■□ 3.15
LIMCH1-211ENST00000509638 SLFN13Q68D06 897 aa34.7■■■■□ 3.15
LIMCH1-211ENST00000509638 Q6ZUG5 572 aa34.7■■■■□ 3.15
LIMCH1-211ENST00000509638 IFNL1Q8IU54 200 aa34.7■■■■□ 3.15
LIMCH1-211ENST00000509638 REM2Q8IYK8 340 aaPredicted RBP34.7■■■■□ 3.15
LIMCH1-211ENST00000509638 NUP88Q99567 741 aaPredicted RBP34.7■■■■□ 3.15
LIMCH1-211ENST00000509638 WDR46O15213 610 aaKnown RBP34.7■■■■□ 3.14
LIMCH1-211ENST00000509638 LIFRP42702 1097 aa34.7■■■■□ 3.14
LIMCH1-211ENST00000509638 ANKRD23Q86SG2 305 aa34.7■■■■□ 3.14
LIMCH1-211ENST00000509638 RPAP3Q9H6T3 665 aaPredicted RBP34.7■■■■□ 3.14
LIMCH1-211ENST00000509638 NFXL1Q6ZNB6 911 aa34.69■■■■□ 3.14
LIMCH1-211ENST00000509638 GMCL1Q96IK5 515 aa34.69■■■■□ 3.14
LIMCH1-211ENST00000509638 FAM83BQ5T0W9 1011 aa34.68■■■■□ 3.14
LIMCH1-211ENST00000509638 PDHXO00330 501 aa34.67■■■■□ 3.14
LIMCH1-211ENST00000509638 TANGO6Q9C0B7 1094 aa34.67■■■■□ 3.14
LIMCH1-211ENST00000509638 PDRG1Q9NUG6 133 aa34.67■■■■□ 3.14
LIMCH1-211ENST00000509638 RLFQ13129 1914 aa34.67■■■■□ 3.14
LIMCH1-211ENST00000509638 CCDC69A6NI79 296 aa34.66■■■■□ 3.14
LIMCH1-211ENST00000509638 PDHBP11177 359 aa34.66■■■■□ 3.14
LIMCH1-211ENST00000509638 SLC1A4P43007 532 aa34.66■■■■□ 3.14
LIMCH1-211ENST00000509638 SGMS1Q86VZ5 419 aa34.66■■■■□ 3.14
LIMCH1-211ENST00000509638 TMTC2Q8N394 836 aa34.66■■■■□ 3.14
LIMCH1-211ENST00000509638 ISY1Q9ULR0 285 aaKnown RBP34.66■■■■□ 3.14
LIMCH1-211ENST00000509638 PABPC4Q13310 644 aaKnown RBP eCLIP34.66■■■■□ 3.14
LIMCH1-211ENST00000509638 OTUD7BQ6GQQ9 843 aa34.66■■■■□ 3.14
LIMCH1-211ENST00000509638 CATIPQ7Z7H3 387 aa34.66■■■■□ 3.14
LIMCH1-211ENST00000509638 ZNF654Q8IZM8 581 aa34.66■■■■□ 3.14
LIMCH1-211ENST00000509638 DCAF4Q8WV16 495 aa34.66■■■■□ 3.14
LIMCH1-211ENST00000509638 BRF1Q92994 677 aa34.66■■■■□ 3.14
LIMCH1-211ENST00000509638 CCDC96Q2M329 555 aa34.65■■■■□ 3.14
LIMCH1-211ENST00000509638 FBXL16Q8N461 479 aa34.65■■■■□ 3.14
LIMCH1-211ENST00000509638 AGXT2Q9BYV1 514 aa34.65■■■■□ 3.14
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms