RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 MFSD14AQ96MC6 490 aa5.98□□□□□ -1.45
USP54-217ENST00000498213 ZC3H12CQ9C0D7 883 aaKnown RBP5.98□□□□□ -1.45
USP54-217ENST00000498213 ATG3Q9NT62 314 aa5.98□□□□□ -1.45
USP54-217ENST00000498213 DUOX2Q9NRD8 1548 aa5.98□□□□□ -1.45
USP54-217ENST00000498213 THSD7AQ9UPZ6 1657 aa5.98□□□□□ -1.45
USP54-217ENST00000498213 WDR64B1ANS9 1081 aa5.97□□□□□ -1.45
USP54-217ENST00000498213 POLD1P28340 1107 aa5.97□□□□□ -1.45
USP54-217ENST00000498213 GSTT1P30711 240 aa5.97□□□□□ -1.45
USP54-217ENST00000498213 C2CD4AQ8NCU7 369 aaPredicted RBP5.97□□□□□ -1.45
USP54-217ENST00000498213 GLIS3Q8NEA6 775 aa5.97□□□□□ -1.45
USP54-217ENST00000498213 TMEM39AQ9NV64 488 aa5.97□□□□□ -1.45
USP54-217ENST00000498213 ADGRE2Q9UHX3 823 aa5.97□□□□□ -1.45
USP54-217ENST00000498213 SPG7Q9UQ90 795 aa5.97□□□□□ -1.45
USP54-217ENST00000498213 ACTL7BQ9Y614 415 aa5.97□□□□□ -1.45
USP54-217ENST00000498213 TECPR2O15040 1411 aa5.97□□□□□ -1.45
USP54-217ENST00000498213 NWD2Q9ULI1 1742 aa5.96□□□□□ -1.45
USP54-217ENST00000498213 GCC2Q8IWJ2 1684 aa5.96□□□□□ -1.46
USP54-217ENST00000498213 AOC2O75106 756 aa5.96□□□□□ -1.46
USP54-217ENST00000498213 ECEL1O95672 775 aa5.96□□□□□ -1.46
USP54-217ENST00000498213 CTSBP07858 339 aa5.96□□□□□ -1.46
USP54-217ENST00000498213 SLFN14P0C7P3 912 aa5.96□□□□□ -1.46
USP54-217ENST00000498213 ASPAP45381 313 aa5.96□□□□□ -1.46
USP54-217ENST00000498213 FMR1Q06787 632 aaKnown RBP eCLIP5.96□□□□□ -1.46
USP54-217ENST00000498213 FAAP100Q0VG06 881 aa5.96□□□□□ -1.46
USP54-217ENST00000498213 FZD5Q13467 585 aa5.96□□□□□ -1.46
USP54-217ENST00000498213 MAP7Q14244 749 aa5.96□□□□□ -1.46
USP54-217ENST00000498213 CHRNA2Q15822 529 aa5.96□□□□□ -1.46
USP54-217ENST00000498213 ZNF326Q5BKZ1 582 aaKnown RBP5.96□□□□□ -1.46
USP54-217ENST00000498213 CDPF1Q6NVV7 123 aa5.96□□□□□ -1.46
USP54-217ENST00000498213 KCNB2Q92953 911 aa5.96□□□□□ -1.46
USP54-217ENST00000498213 ABHD8Q96I13 439 aa5.96□□□□□ -1.46
USP54-217ENST00000498213 OSBPL1AQ9BXW6 950 aa5.96□□□□□ -1.46
USP54-217ENST00000498213 SRCIN1Q9C0H9 1055 aa5.96□□□□□ -1.46
USP54-217ENST00000498213 PIDD1Q9HB75 910 aa5.96□□□□□ -1.46
USP54-217ENST00000498213 NMRK2Q9NPI5 230 aa5.96□□□□□ -1.46
USP54-217ENST00000498213 PRDM11Q9NQV5 511 aa5.96□□□□□ -1.46
USP54-217ENST00000498213 USP19O94966 1318 aa5.96□□□□□ -1.46
USP54-217ENST00000498213 LMTK2Q8IWU2 1503 aa5.95□□□□□ -1.46
USP54-217ENST00000498213 CCDC85CA6NKD9 419 aa5.95□□□□□ -1.46
USP54-217ENST00000498213 GSTP1P09211 210 aaKnown RBP5.95□□□□□ -1.46
USP54-217ENST00000498213 HOXA10P31260 410 aaPredicted RBP5.95□□□□□ -1.46
USP54-217ENST00000498213 TNS3Q68CZ2 1445 aa5.95□□□□□ -1.46
USP54-217ENST00000498213 SULF2Q8IWU5 870 aa5.95□□□□□ -1.46
USP54-217ENST00000498213 VPS8Q8N3P4 1428 aa5.95□□□□□ -1.46
USP54-217ENST00000498213 PMFBP1Q8TBY8 1022 aa5.95□□□□□ -1.46
USP54-217ENST00000498213 TBC1D32Q96NH3 1257 aa5.95□□□□□ -1.46
USP54-217ENST00000498213 WDR18Q9BV38 432 aa5.95□□□□□ -1.46
USP54-217ENST00000498213 CBX8Q9HC52 389 aa5.95□□□□□ -1.46
USP54-217ENST00000498213 PIM2Q9P1W9 311 aa5.95□□□□□ -1.46
USP54-217ENST00000498213 LEMD3Q9Y2U8 911 aa5.95□□□□□ -1.46
USP54-217ENST00000498213 SAMM50Q9Y512 469 aa5.95□□□□□ -1.46
USP54-217ENST00000498213 NRAPQ86VF7 1730 aa5.94□□□□□ -1.46
USP54-217ENST00000498213 WDR90Q96KV7 1748 aa5.94□□□□□ -1.46
USP54-217ENST00000498213 CCDC144AA2RUR9 1427 aa5.94□□□□□ -1.46
USP54-217ENST00000498213 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP5.94□□□□□ -1.46
USP54-217ENST00000498213 GIPC1O14908 333 aa5.94□□□□□ -1.46
USP54-217ENST00000498213 LIG1P18858 919 aa5.94□□□□□ -1.46
USP54-217ENST00000498213 EVA1CP58658 441 aa5.94□□□□□ -1.46
USP54-217ENST00000498213 TPTE2Q6XPS3 522 aa5.94□□□□□ -1.46
USP54-217ENST00000498213 ACSBG1Q96GR2 724 aa5.94□□□□□ -1.46
USP54-217ENST00000498213 METTL22Q9BUU2 404 aaPredicted RBP5.94□□□□□ -1.46
USP54-217ENST00000498213 EMILIN2Q9BXX0 1053 aa5.94□□□□□ -1.46
USP54-217ENST00000498213 CEP44Q9C0F1 390 aa5.94□□□□□ -1.46
USP54-217ENST00000498213 CCDC86Q9H6F5 360 aaKnown RBP5.94□□□□□ -1.46
USP54-217ENST00000498213 FAM105AQ9NUU6 356 aa5.94□□□□□ -1.46
USP54-217ENST00000498213 DAGLAQ9Y4D2 1042 aa5.94□□□□□ -1.46
USP54-217ENST00000498213 NEXMIFQ5QGS0 1516 aa5.94□□□□□ -1.46
USP54-217ENST00000498213 DHX57Q6P158 1386 aaKnown RBP5.93□□□□□ -1.46
USP54-217ENST00000498213 FOXN1O15353 648 aa5.93□□□□□ -1.46
USP54-217ENST00000498213 LDHBP07195 334 aaKnown RBP5.93□□□□□ -1.46
USP54-217ENST00000498213 P4HBP07237 508 aaKnown RBP5.93□□□□□ -1.46
USP54-217ENST00000498213 NFICP08651 508 aa5.93□□□□□ -1.46
USP54-217ENST00000498213 FGD1P98174 961 aa5.93□□□□□ -1.46
USP54-217ENST00000498213 ID3Q02535 119 aa5.93□□□□□ -1.46
USP54-217ENST00000498213 C16orf71Q8IYS4 520 aaPredicted RBP5.93□□□□□ -1.46
USP54-217ENST00000498213 ABI1Q8IZP0 508 aa5.93□□□□□ -1.46
USP54-217ENST00000498213 ATXN3LQ9H3M9 355 aa5.93□□□□□ -1.46
USP54-217ENST00000498213 ANGEL1Q9UNK9 670 aaKnown RBP5.93□□□□□ -1.46
USP54-217ENST00000498213 ANKRD30AQ9BXX3 1397 aa5.93□□□□□ -1.46
USP54-217ENST00000498213 NRXN3Q9Y4C0 1643 aa5.92□□□□□ -1.46
USP54-217ENST00000498213 RRBP1Q9P2E9 1410 aaKnown RBP5.92□□□□□ -1.46
USP54-217ENST00000498213 NME2P22392 152 aa5.92□□□□□ -1.46
USP54-217ENST00000498213 CPSF6Q16630 551 aaKnown RBP eCLIP5.92□□□□□ -1.46
USP54-217ENST00000498213 ZNF827Q17R98 1081 aa5.92□□□□□ -1.46
USP54-217ENST00000498213 DUSP27Q5VZP5 1158 aa5.92□□□□□ -1.46
USP54-217ENST00000498213 MAP1SQ66K74 1059 aaPredicted RBP5.92□□□□□ -1.46
USP54-217ENST00000498213 SND1Q7KZF4 910 aaKnown RBP eCLIP5.92□□□□□ -1.46
USP54-217ENST00000498213 WAPLQ7Z5K2 1190 aa5.92□□□□□ -1.46
USP54-217ENST00000498213 TCP11L2Q8N4U5 519 aa5.92□□□□□ -1.46
USP54-217ENST00000498213 EZH1Q92800 747 aaPredicted RBP5.92□□□□□ -1.46
USP54-217ENST00000498213 SETDB2Q96T68 719 aa5.92□□□□□ -1.46
USP54-217ENST00000498213 SEMA6CQ9H3T2 930 aa5.92□□□□□ -1.46
USP54-217ENST00000498213 LGR6Q9HBX8 967 aa5.92□□□□□ -1.46
USP54-217ENST00000498213 KRT82Q9NSB4 513 aa5.92□□□□□ -1.46
USP54-217ENST00000498213 PRKAG2Q9UGJ0 569 aa5.92□□□□□ -1.46
USP54-217ENST00000498213 PPM1HQ9ULR3 514 aa5.92□□□□□ -1.46
USP54-217ENST00000498213 ARHGEF10O15013 1369 aa5.92□□□□□ -1.46
USP54-217ENST00000498213 TMPRSS2O15393 492 aa5.91□□□□□ -1.46
USP54-217ENST00000498213 RNGTTO60942 597 aaKnown RBP5.91□□□□□ -1.46
USP54-217ENST00000498213 FBXO24O75426 580 aa5.91□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms