RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 VCPKMTQ9H867 229 aa18.9■□□□□ 0.62
LIME1-209ENST00000494776 INCENPQ9NQS7 918 aa18.9■□□□□ 0.62
LIME1-209ENST00000494776 ZNF213O14771 459 aa18.89■□□□□ 0.61
LIME1-209ENST00000494776 GTF3C2Q8WUA4 911 aaPredicted RBP18.89■□□□□ 0.61
LIME1-209ENST00000494776 DSCC1Q9BVC3 393 aa18.89■□□□□ 0.61
LIME1-209ENST00000494776 NYAP2Q9P242 653 aa18.89■□□□□ 0.61
LIME1-209ENST00000494776 CLIP2Q9UDT6 1046 aa18.89■□□□□ 0.61
LIME1-209ENST00000494776 CTNNA3Q9UI47 895 aa18.89■□□□□ 0.61
LIME1-209ENST00000494776 PTPN22Q9Y2R2 807 aa18.89■□□□□ 0.61
LIME1-209ENST00000494776 RAD50Q92878 1312 aa18.89■□□□□ 0.61
LIME1-209ENST00000494776 CAP1Q01518 475 aa18.88■□□□□ 0.61
LIME1-209ENST00000494776 ERICH6BQ5W0A0 696 aa18.88■□□□□ 0.61
LIME1-209ENST00000494776 MFSD6Q6ZSS7 791 aa18.88■□□□□ 0.61
LIME1-209ENST00000494776 NEDD1Q8NHV4 660 aa18.88■□□□□ 0.61
LIME1-209ENST00000494776 CEP95Q96GE4 821 aa18.88■□□□□ 0.61
LIME1-209ENST00000494776 TRIM47Q96LD4 638 aa18.88■□□□□ 0.61
LIME1-209ENST00000494776 PAGR1Q9BTK6 254 aa18.88■□□□□ 0.61
LIME1-209ENST00000494776 HPS5Q9UPZ3 1129 aa18.88■□□□□ 0.61
LIME1-209ENST00000494776 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.88■□□□□ 0.61
LIME1-209ENST00000494776 TTLL1O95922 423 aa18.87■□□□□ 0.61
LIME1-209ENST00000494776 IMMTQ16891 758 aaKnown RBP18.87■□□□□ 0.61
LIME1-209ENST00000494776 PPP4R3BQ5MIZ7 849 aa18.87■□□□□ 0.61
LIME1-209ENST00000494776 SAMD1Q6SPF0 538 aaPredicted RBP18.87■□□□□ 0.61
LIME1-209ENST00000494776 CCAR1Q8IX12 1150 aaKnown RBP18.87■□□□□ 0.61
LIME1-209ENST00000494776 GPRC5AQ8NFJ5 357 aa18.87■□□□□ 0.61
LIME1-209ENST00000494776 RNF41Q9H4P4 317 aaPredicted RBP18.87■□□□□ 0.61
LIME1-209ENST00000494776 PPP4R2Q9NY27 417 aa18.87■□□□□ 0.61
LIME1-209ENST00000494776 MTMR4Q9NYA4 1195 aa18.87■□□□□ 0.61
LIME1-209ENST00000494776 IGKV6D-41A0A0C4DH26 115 aa18.86■□□□□ 0.61
LIME1-209ENST00000494776 TNPO2O14787 897 aaKnown RBP18.86■□□□□ 0.61
LIME1-209ENST00000494776 WDR46O15213 610 aaKnown RBP18.86■□□□□ 0.61
LIME1-209ENST00000494776 ORC4O43929 436 aa18.86■□□□□ 0.61
LIME1-209ENST00000494776 CTGFP29279 349 aa18.86■□□□□ 0.61
LIME1-209ENST00000494776 PRMT2P55345 433 aa18.86■□□□□ 0.61
LIME1-209ENST00000494776 COG2Q14746 738 aa18.86■□□□□ 0.61
LIME1-209ENST00000494776 KIAA1755Q5JYT7 1200 aa18.86■□□□□ 0.61
LIME1-209ENST00000494776 AKNAD1Q5T1N1 836 aa18.86■□□□□ 0.61
LIME1-209ENST00000494776 IL25Q9H293 177 aa18.86■□□□□ 0.61
LIME1-209ENST00000494776 HOXC10Q9NYD6 342 aa18.86■□□□□ 0.61
LIME1-209ENST00000494776 PLIN4Q96Q06 1357 aa18.85■□□□□ 0.61
LIME1-209ENST00000494776 MYPNQ86TC9 1320 aa18.85■□□□□ 0.61
LIME1-209ENST00000494776 FLOT1O75955 427 aa18.85■□□□□ 0.61
LIME1-209ENST00000494776 PCP11498 1178 aaKnown RBP18.85■□□□□ 0.61
LIME1-209ENST00000494776 BMP2KLQ5H9B9 411 aa18.85■□□□□ 0.61
LIME1-209ENST00000494776 STAG1Q8WVM7 1258 aa18.85■□□□□ 0.61
LIME1-209ENST00000494776 COA7Q96BR5 231 aa18.85■□□□□ 0.61
LIME1-209ENST00000494776 CWC22Q9HCG8 908 aaKnown RBP18.85■□□□□ 0.61
LIME1-209ENST00000494776 RBPJLQ9UBG7 517 aa18.85■□□□□ 0.61
LIME1-209ENST00000494776 MORF4L1Q9UBU8 362 aa18.85■□□□□ 0.61
LIME1-209ENST00000494776 SRRDQ9UH36 339 aa18.85■□□□□ 0.61
LIME1-209ENST00000494776 TACC3Q9Y6A5 838 aa18.85■□□□□ 0.61
LIME1-209ENST00000494776 PTCH2Q9Y6C5 1203 aa18.85■□□□□ 0.61
LIME1-209ENST00000494776 F5H6K3 240 aa18.84■□□□□ 0.61
LIME1-209ENST00000494776 FGRP09769 529 aa18.84■□□□□ 0.61
LIME1-209ENST00000494776 ERVK-9P63128 1117 aa18.84■□□□□ 0.61
LIME1-209ENST00000494776 ERVK-24P63145 666 aa18.84■□□□□ 0.61
LIME1-209ENST00000494776 KLRC3Q07444 240 aa18.84■□□□□ 0.61
LIME1-209ENST00000494776 TBC1D10CQ8IV04 446 aa18.84■□□□□ 0.61
LIME1-209ENST00000494776 LRRC47Q8N1G4 583 aaKnown RBP18.84■□□□□ 0.61
LIME1-209ENST00000494776 RAET1EQ8TD07 263 aa18.84■□□□□ 0.61
LIME1-209ENST00000494776 TXNRD2Q9NNW7 524 aa18.84■□□□□ 0.61
LIME1-209ENST00000494776 STX8Q9UNK0 236 aa18.84■□□□□ 0.61
LIME1-209ENST00000494776 RABGAP1Q9Y3P9 1069 aa18.84■□□□□ 0.61
LIME1-209ENST00000494776 SPDYE16A6NNV3 312 aaPredicted RBP18.83■□□□□ 0.6
LIME1-209ENST00000494776 SGSM2O43147 1006 aa18.83■□□□□ 0.6
LIME1-209ENST00000494776 PEX10O60683 326 aa18.83■□□□□ 0.6
LIME1-209ENST00000494776 CCNA1P78396 465 aa18.83■□□□□ 0.6
LIME1-209ENST00000494776 MLLT1Q03111 559 aaPredicted RBP18.83■□□□□ 0.6
LIME1-209ENST00000494776 SLC9C1Q4G0N8 1177 aa18.83■□□□□ 0.6
LIME1-209ENST00000494776 FAM83BQ5T0W9 1011 aa18.83■□□□□ 0.6
LIME1-209ENST00000494776 KIAA1211Q6ZU35 1233 aa18.83■□□□□ 0.6
LIME1-209ENST00000494776 MKL1Q969V6 931 aa18.83■□□□□ 0.6
LIME1-209ENST00000494776 ISY1Q9ULR0 285 aaKnown RBP18.83■□□□□ 0.6
LIME1-209ENST00000494776 GREB1LQ9C091 1923 aaPredicted RBP18.82■□□□□ 0.6
LIME1-209ENST00000494776 ZSWIM8A7E2V4 1837 aa18.82■□□□□ 0.6
LIME1-209ENST00000494776 NMT2O60551 498 aa18.82■□□□□ 0.6
LIME1-209ENST00000494776 NDUFB10O96000 172 aa18.82■□□□□ 0.6
LIME1-209ENST00000494776 PRKCZQ05513 592 aa18.82■□□□□ 0.6
LIME1-209ENST00000494776 CASC1Q6TDU7 716 aa18.82■□□□□ 0.6
LIME1-209ENST00000494776 LBX2Q6XYB7 198 aa18.82■□□□□ 0.6
LIME1-209ENST00000494776 NBPF11Q86T75 865 aa18.82■□□□□ 0.6
LIME1-209ENST00000494776 ESR2Q92731 530 aa18.82■□□□□ 0.6
LIME1-209ENST00000494776 NBPF3Q9H094 633 aa18.82■□□□□ 0.6
LIME1-209ENST00000494776 IL17RBQ9NRM6 502 aa18.82■□□□□ 0.6
LIME1-209ENST00000494776 SYNPO2Q9UMS6 1093 aa18.82■□□□□ 0.6
LIME1-209ENST00000494776 DSG3P32926 999 aa18.81■□□□□ 0.6
LIME1-209ENST00000494776 PTH1RQ03431 593 aa18.81■□□□□ 0.6
LIME1-209ENST00000494776 Q3C1V9 767 aa18.81■□□□□ 0.6
LIME1-209ENST00000494776 SLFN13Q68D06 897 aa18.81■□□□□ 0.6
LIME1-209ENST00000494776 NUP88Q99567 741 aaPredicted RBP18.81■□□□□ 0.6
LIME1-209ENST00000494776 U3KPZ7 1027 aaPredicted RBP18.81■□□□□ 0.6
LIME1-209ENST00000494776 NEDD4P46934 1319 aa18.8■□□□□ 0.6
LIME1-209ENST00000494776 MAPK4P31152 587 aa18.8■□□□□ 0.6
LIME1-209ENST00000494776 RGS19P49795 217 aa18.8■□□□□ 0.6
LIME1-209ENST00000494776 PLS1Q14651 629 aa18.8■□□□□ 0.6
LIME1-209ENST00000494776 WDR78Q5VTH9 848 aa18.8■□□□□ 0.6
LIME1-209ENST00000494776 MB21D1Q8N884 522 aa18.8■□□□□ 0.6
LIME1-209ENST00000494776 GMCL1P1Q8NEA9 526 aa18.8■□□□□ 0.6
LIME1-209ENST00000494776 ATG4CQ96DT6 458 aa18.8■□□□□ 0.6
LIME1-209ENST00000494776 TCP11L1Q9NUJ3 509 aa18.8■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms