RNA–Protein interactions for RNA: ENST00000494748.1

SDF4-207, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 3,516 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-207ENST00000494748 HDAC6Q9UBN7 1215 aa17.37■□□□□ 0.37
SDF4-207ENST00000494748 TNS3Q68CZ2 1445 aa17.37■□□□□ 0.37
SDF4-207ENST00000494748 PATL2C9JE40 543 aaKnown RBP17.37■□□□□ 0.37
SDF4-207ENST00000494748 ZKSCAN3Q9BRR0 538 aa17.37■□□□□ 0.37
SDF4-207ENST00000494748 GSG1L2A8MUP6 293 aa17.37■□□□□ 0.37
SDF4-207ENST00000494748 IFIT5Q13325 482 aaKnown RBP17.37■□□□□ 0.37
SDF4-207ENST00000494748 PKN1Q16512 942 aa17.37■□□□□ 0.37
SDF4-207ENST00000494748 AKNAD1Q5T1N1 836 aa17.37■□□□□ 0.37
SDF4-207ENST00000494748 CEP131Q9UPN4 1083 aa17.37■□□□□ 0.37
SDF4-207ENST00000494748 METTL24Q5JXM2 366 aa17.36■□□□□ 0.37
SDF4-207ENST00000494748 ANKLE2Q86XL3 938 aa17.36■□□□□ 0.37
SDF4-207ENST00000494748 CCDC82Q8N4S0 544 aa17.36■□□□□ 0.37
SDF4-207ENST00000494748 MMS19Q96T76 1030 aa17.36■□□□□ 0.37
SDF4-207ENST00000494748 ANKRD65E5RJM6 399 aa17.36■□□□□ 0.37
SDF4-207ENST00000494748 AGPSO00116 658 aa17.36■□□□□ 0.37
SDF4-207ENST00000494748 SHOX2O60902 331 aaPredicted RBP17.36■□□□□ 0.37
SDF4-207ENST00000494748 ATP2B1P20020 1258 aa17.36■□□□□ 0.37
SDF4-207ENST00000494748 TNNT3P45378 269 aaPredicted RBP17.36■□□□□ 0.37
SDF4-207ENST00000494748 CDHR2Q9BYE9 1310 aa17.36■□□□□ 0.37
SDF4-207ENST00000494748 CPP00450 1065 aa17.35■□□□□ 0.37
SDF4-207ENST00000494748 COPB1P53618 953 aaKnown RBP17.35■□□□□ 0.37
SDF4-207ENST00000494748 HERVK_113P62684 666 aa17.35■□□□□ 0.37
SDF4-207ENST00000494748 STAG1Q8WVM7 1258 aa17.35■□□□□ 0.37
SDF4-207ENST00000494748 GREM2Q9H772 168 aa17.35■□□□□ 0.37
SDF4-207ENST00000494748 PPFIA4O75335 1185 aa17.35■□□□□ 0.37
SDF4-207ENST00000494748 FILIP1LQ4L180 1135 aa17.35■□□□□ 0.37
SDF4-207ENST00000494748 ICE2Q659A1 982 aa17.35■□□□□ 0.37
SDF4-207ENST00000494748 TRIM22Q8IYM9 498 aa17.35■□□□□ 0.37
SDF4-207ENST00000494748 TNFRSF25Q93038 417 aa17.35■□□□□ 0.37
SDF4-207ENST00000494748 TFR2Q9UP52 801 aa17.35■□□□□ 0.37
SDF4-207ENST00000494748 ATP1A1P05023 1023 aaKnown RBP17.35■□□□□ 0.37
SDF4-207ENST00000494748 MYBL2P10244 700 aa17.35■□□□□ 0.37
SDF4-207ENST00000494748 FUT2Q10981 343 aa17.35■□□□□ 0.37
SDF4-207ENST00000494748 NPY5RQ15761 445 aa17.35■□□□□ 0.37
SDF4-207ENST00000494748 CTR9Q6PD62 1173 aa17.35■□□□□ 0.37
SDF4-207ENST00000494748 CERS3Q8IU89 383 aa17.35■□□□□ 0.37
SDF4-207ENST00000494748 ZBTB38Q8NAP3 1195 aaPredicted RBP17.35■□□□□ 0.37
SDF4-207ENST00000494748 RIN2Q8WYP3 895 aaPredicted RBP17.35■□□□□ 0.37
SDF4-207ENST00000494748 NDUFA10O95299 355 aa17.34■□□□□ 0.37
SDF4-207ENST00000494748 PAPD7Q5XG87 772 aaKnown RBP17.34■□□□□ 0.37
SDF4-207ENST00000494748 PDXDC2PQ6P474 469 aa17.34■□□□□ 0.37
SDF4-207ENST00000494748 IRF2BP1Q8IU81 584 aa17.34■□□□□ 0.37
SDF4-207ENST00000494748 PHF20Q9BVI0 1012 aa17.34■□□□□ 0.37
SDF4-207ENST00000494748 VPS16Q9H269 839 aa17.34■□□□□ 0.37
SDF4-207ENST00000494748 PRKAB2O43741 272 aa17.34■□□□□ 0.37
SDF4-207ENST00000494748 CHRNA2Q15822 529 aa17.34■□□□□ 0.37
SDF4-207ENST00000494748 HSP90B2PQ58FF3 399 aa17.34■□□□□ 0.37
SDF4-207ENST00000494748 TCP11X2Q5H9J9 407 aa17.34■□□□□ 0.37
SDF4-207ENST00000494748 STAMQ92783 540 aa17.34■□□□□ 0.37
SDF4-207ENST00000494748 AIDAQ96BJ3 306 aa17.34■□□□□ 0.37
SDF4-207ENST00000494748 CNNM2Q9H8M5 875 aa17.34■□□□□ 0.37
SDF4-207ENST00000494748 TAB2Q9NYJ8 693 aa17.34■□□□□ 0.37
SDF4-207ENST00000494748 ENC1O14682 589 aa17.34■□□□□ 0.37
SDF4-207ENST00000494748 MBD4O95243 580 aa17.34■□□□□ 0.37
SDF4-207ENST00000494748 WDR59Q6PJI9 974 aa17.34■□□□□ 0.37
SDF4-207ENST00000494748 FANCBQ8NB91 859 aa17.34■□□□□ 0.37
SDF4-207ENST00000494748 AFAP1L1Q8TED9 768 aa17.34■□□□□ 0.37
SDF4-207ENST00000494748 RWDD2AQ9UIY3 292 aa17.34■□□□□ 0.37
SDF4-207ENST00000494748 NUP98P52948 1817 aa17.33■□□□□ 0.37
SDF4-207ENST00000494748 TRIM75PA6NK02 468 aa17.33■□□□□ 0.37
SDF4-207ENST00000494748 ITGA6P23229 1130 aa17.33■□□□□ 0.37
SDF4-207ENST00000494748 TTC31Q49AM3 519 aaPredicted RBP17.33■□□□□ 0.37
SDF4-207ENST00000494748 COG1Q8WTW3 980 aa17.33■□□□□ 0.37
SDF4-207ENST00000494748 KRT23Q9C075 422 aa17.33■□□□□ 0.37
SDF4-207ENST00000494748 ARMT1Q9H993 441 aa17.33■□□□□ 0.37
SDF4-207ENST00000494748 EPN1Q9Y6I3 576 aaPredicted RBP17.33■□□□□ 0.37
SDF4-207ENST00000494748 SRGAP2O75044 1071 aa17.33■□□□□ 0.36
SDF4-207ENST00000494748 KRT9P35527 623 aa17.33■□□□□ 0.36
SDF4-207ENST00000494748 RCAN1P53805 252 aa17.33■□□□□ 0.36
SDF4-207ENST00000494748 TAF7LQ5H9L4 462 aa17.33■□□□□ 0.36
SDF4-207ENST00000494748 TARSL2A2RTX5 802 aaKnown RBP17.33■□□□□ 0.36
SDF4-207ENST00000494748 N4BP3O15049 544 aa17.33■□□□□ 0.36
SDF4-207ENST00000494748 CSB-PGBD3P0DP91 1061 aa17.33■□□□□ 0.36
SDF4-207ENST00000494748 WTAPQ15007 396 aa17.33■□□□□ 0.36
SDF4-207ENST00000494748 LDHAL6AQ6ZMR3 332 aa17.33■□□□□ 0.36
SDF4-207ENST00000494748 ZNF654Q8IZM8 581 aa17.33■□□□□ 0.36
SDF4-207ENST00000494748 CCDC148Q8NFR7 591 aa17.33■□□□□ 0.36
SDF4-207ENST00000494748 CTCFLQ8NI51 663 aaPredicted RBP17.33■□□□□ 0.36
SDF4-207ENST00000494748 DNAJC7Q99615 494 aa17.33■□□□□ 0.36
SDF4-207ENST00000494748 NAPBQ9H115 298 aa17.33■□□□□ 0.36
SDF4-207ENST00000494748 TRIM14Q14142 442 aa17.32■□□□□ 0.36
SDF4-207ENST00000494748 SEC23AQ15436 765 aa17.32■□□□□ 0.36
SDF4-207ENST00000494748 IL17AQ16552 155 aa17.32■□□□□ 0.36
SDF4-207ENST00000494748 NUP88Q99567 741 aaPredicted RBP17.32■□□□□ 0.36
SDF4-207ENST00000494748 BLZF1Q9H2G9 400 aa17.32■□□□□ 0.36
SDF4-207ENST00000494748 VPS54Q9P1Q0 977 aa17.32■□□□□ 0.36
SDF4-207ENST00000494748 PDE8BO95263 885 aa17.32■□□□□ 0.36
SDF4-207ENST00000494748 FGFR2P21802 821 aa17.32■□□□□ 0.36
SDF4-207ENST00000494748 MFSD6Q6ZSS7 791 aa17.32■□□□□ 0.36
SDF4-207ENST00000494748 CABLES1Q8TDN4 633 aa17.32■□□□□ 0.36
SDF4-207ENST00000494748 RNF216Q9NWF9 866 aaPredicted RBP17.32■□□□□ 0.36
SDF4-207ENST00000494748 GUCA1BQ9UMX6 200 aa17.32■□□□□ 0.36
SDF4-207ENST00000494748 TTC26A0AVF1 554 aa17.31■□□□□ 0.36
SDF4-207ENST00000494748 KCNJ18B7U540 433 aa17.31■□□□□ 0.36
SDF4-207ENST00000494748 KCNJ12Q14500 433 aa17.31■□□□□ 0.36
SDF4-207ENST00000494748 ZNF662Q6ZS27 426 aa17.31■□□□□ 0.36
SDF4-207ENST00000494748 DDX17Q92841 729 aaKnown RBP17.31■□□□□ 0.36
SDF4-207ENST00000494748 FERMT2Q96AC1 680 aa17.31■□□□□ 0.36
SDF4-207ENST00000494748 RNF26Q9BY78 433 aaPredicted RBP17.31■□□□□ 0.36
SDF4-207ENST00000494748 MYH1P12882 1939 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 85.7 ms