RNA–Protein interactions for RNA: ENST00000490690.1

SHROOM3-209, Transcript of shroom family member 3, humanhuman

TSL 4

Gene SHROOM3, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-209ENST00000490690 CASTP20810 708 aaKnown RBP23.29■■□□□ 1.32
SHROOM3-209ENST00000490690 RBM25P49756 843 aaKnown RBP23.29■■□□□ 1.32
SHROOM3-209ENST00000490690 HMGCS2P54868 508 aa23.29■■□□□ 1.32
SHROOM3-209ENST00000490690 KIF23Q02241 960 aaPredicted RBP23.29■■□□□ 1.32
SHROOM3-209ENST00000490690 MAP2K1Q02750 393 aaPredicted RBP23.29■■□□□ 1.32
SHROOM3-209ENST00000490690 MKRN3Q13064 507 aaKnown RBP23.29■■□□□ 1.32
SHROOM3-209ENST00000490690 SHROOM1Q2M3G4 852 aaPredicted RBP23.29■■□□□ 1.32
SHROOM3-209ENST00000490690 TMEM67Q5HYA8 995 aa23.29■■□□□ 1.32
SHROOM3-209ENST00000490690 ANKRD23Q86SG2 305 aa23.29■■□□□ 1.32
SHROOM3-209ENST00000490690 AGTPBP1Q9UPW5 1226 aa23.29■■□□□ 1.32
SHROOM3-209ENST00000490690 WDR46O15213 610 aaKnown RBP23.28■■□□□ 1.32
SHROOM3-209ENST00000490690 LIFRP42702 1097 aa23.28■■□□□ 1.32
SHROOM3-209ENST00000490690 HTRA3P83110 453 aa23.28■■□□□ 1.32
SHROOM3-209ENST00000490690 RCSD1Q6JBY9 416 aa23.28■■□□□ 1.32
SHROOM3-209ENST00000490690 GADL1Q6ZQY3 521 aa23.28■■□□□ 1.32
SHROOM3-209ENST00000490690 CYB5R4Q7L1T6 521 aa23.28■■□□□ 1.32
SHROOM3-209ENST00000490690 CCDC84Q86UT8 332 aaPredicted RBP23.28■■□□□ 1.32
SHROOM3-209ENST00000490690 ENAHQ8N8S7 591 aaPredicted RBP23.28■■□□□ 1.32
SHROOM3-209ENST00000490690 ACER1Q8TDN7 264 aa23.28■■□□□ 1.32
SHROOM3-209ENST00000490690 ZSWIM6Q9HCJ5 1215 aa23.28■■□□□ 1.32
SHROOM3-209ENST00000490690 FRMD4AQ9P2Q2 1039 aaPredicted RBP23.28■■□□□ 1.32
SHROOM3-209ENST00000490690 TAF6LQ9Y6J9 622 aa23.28■■□□□ 1.32
SHROOM3-209ENST00000490690 RUFY3Q7L099 469 aa23.27■■□□□ 1.32
SHROOM3-209ENST00000490690 SIAH1Q8IUQ4 282 aa23.27■■□□□ 1.32
SHROOM3-209ENST00000490690 FBXL16Q8N461 479 aa23.27■■□□□ 1.32
SHROOM3-209ENST00000490690 GTF3C2Q8WUA4 911 aaPredicted RBP23.27■■□□□ 1.32
SHROOM3-209ENST00000490690 BEGAINQ9BUH8 593 aa23.27■■□□□ 1.32
SHROOM3-209ENST00000490690 A0A1W2PRG0 241 aa23.26■■□□□ 1.31
SHROOM3-209ENST00000490690 F5H6K3 240 aa23.26■■□□□ 1.31
SHROOM3-209ENST00000490690 CA12O43570 354 aa23.26■■□□□ 1.31
SHROOM3-209ENST00000490690 NMT2O60551 498 aa23.26■■□□□ 1.31
SHROOM3-209ENST00000490690 OSBPP22059 807 aa23.26■■□□□ 1.31
SHROOM3-209ENST00000490690 RPS6KB1P23443 525 aa23.26■■□□□ 1.31
SHROOM3-209ENST00000490690 KLRC3Q07444 240 aa23.26■■□□□ 1.31
SHROOM3-209ENST00000490690 ADCK5Q3MIX3 580 aa23.26■■□□□ 1.31
SHROOM3-209ENST00000490690 SYNE3Q6ZMZ3 975 aa23.26■■□□□ 1.31
SHROOM3-209ENST00000490690 DCAF4Q8WV16 495 aa23.26■■□□□ 1.31
SHROOM3-209ENST00000490690 GMCL1Q96IK5 515 aa23.26■■□□□ 1.31
SHROOM3-209ENST00000490690 TMEM47Q9BQJ4 181 aa23.26■■□□□ 1.31
SHROOM3-209ENST00000490690 ZKSCAN3Q9BRR0 538 aa23.26■■□□□ 1.31
SHROOM3-209ENST00000490690 CCDC69A6NI79 296 aa23.25■■□□□ 1.31
SHROOM3-209ENST00000490690 USP17L15C9J2P7 530 aa23.25■■□□□ 1.31
SHROOM3-209ENST00000490690 USP17L13C9JLJ4 530 aa23.25■■□□□ 1.31
SHROOM3-209ENST00000490690 USP17L11C9JVI0 530 aa23.25■■□□□ 1.31
SHROOM3-209ENST00000490690 USP17L18D6R9N7 530 aa23.25■■□□□ 1.31
SHROOM3-209ENST00000490690 USP17L22D6RA61 530 aa23.25■■□□□ 1.31
SHROOM3-209ENST00000490690 USP17L17D6RBQ6 530 aa23.25■■□□□ 1.31
SHROOM3-209ENST00000490690 USP17L19D6RCP7 530 aa23.25■■□□□ 1.31
SHROOM3-209ENST00000490690 USP17L20D6RJB6 530 aa23.25■■□□□ 1.31
SHROOM3-209ENST00000490690 CALM1P0DP23 149 aa23.25■■□□□ 1.31
SHROOM3-209ENST00000490690 CALM2P0DP24 149 aa23.25■■□□□ 1.31
SHROOM3-209ENST00000490690 CALM3P0DP25 149 aa23.25■■□□□ 1.31
SHROOM3-209ENST00000490690 HOXA7P31268 230 aaPredicted RBP23.25■■□□□ 1.31
SHROOM3-209ENST00000490690 EXOSC10Q01780 885 aaKnown RBP23.25■■□□□ 1.31
SHROOM3-209ENST00000490690 USP17L24Q0WX57 530 aa23.25■■□□□ 1.31
SHROOM3-209ENST00000490690 ANKRD1Q15327 319 aa23.25■■□□□ 1.31
SHROOM3-209ENST00000490690 SEC23AQ15436 765 aa23.25■■□□□ 1.31
SHROOM3-209ENST00000490690 NFXL1Q6ZNB6 911 aa23.25■■□□□ 1.31
SHROOM3-209ENST00000490690 CATIPQ7Z7H3 387 aa23.25■■□□□ 1.31
SHROOM3-209ENST00000490690 IFNL1Q8IU54 200 aa23.25■■□□□ 1.31
SHROOM3-209ENST00000490690 CLEC10AQ8IUN9 316 aa23.25■■□□□ 1.31
SHROOM3-209ENST00000490690 PNMA1Q8ND90 353 aa23.25■■□□□ 1.31
SHROOM3-209ENST00000490690 BRI3BPQ8WY22 251 aa23.25■■□□□ 1.31
SHROOM3-209ENST00000490690 PARK7Q99497 189 aaKnown RBP23.25■■□□□ 1.31
SHROOM3-209ENST00000490690 EMILIN3Q9NT22 766 aa23.25■■□□□ 1.31
SHROOM3-209ENST00000490690 SH2B2O14492 632 aaPredicted RBP23.24■■□□□ 1.31
SHROOM3-209ENST00000490690 RAD21O60216 631 aa23.24■■□□□ 1.31
SHROOM3-209ENST00000490690 VCAM1P19320 739 aa23.24■■□□□ 1.31
SHROOM3-209ENST00000490690 SLC1A4P43007 532 aa23.24■■□□□ 1.31
SHROOM3-209ENST00000490690 RCAN1P53805 252 aa23.24■■□□□ 1.31
SHROOM3-209ENST00000490690 ANTXR2P58335 489 aa23.24■■□□□ 1.31
SHROOM3-209ENST00000490690 ZYXQ15942 572 aaKnown RBP23.24■■□□□ 1.31
SHROOM3-209ENST00000490690 GPATCH4Q5T3I0 446 aaKnown RBP23.24■■□□□ 1.31
SHROOM3-209ENST00000490690 SLFN13Q68D06 897 aa23.24■■□□□ 1.31
SHROOM3-209ENST00000490690 SGMS1Q86VZ5 419 aa23.24■■□□□ 1.31
SHROOM3-209ENST00000490690 LRRC47Q8N1G4 583 aaKnown RBP23.24■■□□□ 1.31
SHROOM3-209ENST00000490690 IGDCC4Q8TDY8 1250 aa23.24■■□□□ 1.31
SHROOM3-209ENST00000490690 THSD7BQ9C0I4 1608 aa23.23■■□□□ 1.31
SHROOM3-209ENST00000490690 AOC2O75106 756 aa23.23■■□□□ 1.31
SHROOM3-209ENST00000490690 DDAH1O94760 285 aa23.23■■□□□ 1.31
SHROOM3-209ENST00000490690 IRX3P78415 501 aaPredicted RBP23.23■■□□□ 1.31
SHROOM3-209ENST00000490690 MAP3K14Q99558 947 aa23.23■■□□□ 1.31
SHROOM3-209ENST00000490690 SAGE1Q9NXZ1 904 aa23.23■■□□□ 1.31
SHROOM3-209ENST00000490690 PHIPQ8WWQ0 1821 aa23.23■■□□□ 1.31
SHROOM3-209ENST00000490690 MYPNQ86TC9 1320 aa23.23■■□□□ 1.31
SHROOM3-209ENST00000490690 BTBD19C9JJ37 291 aa23.22■■□□□ 1.31
SHROOM3-209ENST00000490690 NDUFB10O96000 172 aa23.22■■□□□ 1.31
SHROOM3-209ENST00000490690 BMP3P12645 472 aa23.22■■□□□ 1.31
SHROOM3-209ENST00000490690 CHST3Q7LGC8 479 aa23.22■■□□□ 1.31
SHROOM3-209ENST00000490690 DNAJC5GQ8N7S2 189 aa23.22■■□□□ 1.31
SHROOM3-209ENST00000490690 TBC1D32Q96NH3 1257 aa23.22■■□□□ 1.31
SHROOM3-209ENST00000490690 LY9Q9HBG7 655 aa23.22■■□□□ 1.31
SHROOM3-209ENST00000490690 HOXC10Q9NYD6 342 aa23.22■■□□□ 1.31
SHROOM3-209ENST00000490690 SLC12A7Q9Y666 1083 aa23.22■■□□□ 1.31
SHROOM3-209ENST00000490690 PDHXO00330 501 aa23.21■■□□□ 1.31
SHROOM3-209ENST00000490690 FDX1P10109 184 aa23.21■■□□□ 1.31
SHROOM3-209ENST00000490690 KIF5BP33176 963 aa23.21■■□□□ 1.31
SHROOM3-209ENST00000490690 MOGSQ13724 837 aa23.21■■□□□ 1.31
SHROOM3-209ENST00000490690 PPP2R5BQ15173 497 aa23.21■■□□□ 1.31
SHROOM3-209ENST00000490690 RABEP1Q15276 862 aa23.21■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms