RNA–Protein interactions for RNA: ENST00000490099.5

TMEM39A-210, Transcript of transmembrane protein 39A, humanhuman

TSL 3

Gene TMEM39A, Length 868 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-210ENST00000490099 BIN2Q9UBW5 565 aaPredicted RBP11.7□□□□□ -0.54
TMEM39A-210ENST00000490099 TMX2Q9Y320 296 aa11.7□□□□□ -0.54
TMEM39A-210ENST00000490099 SLC4A4Q9Y6R1 1079 aa11.7□□□□□ -0.54
TMEM39A-210ENST00000490099 PLXNB2O15031 1838 aa11.7□□□□□ -0.54
TMEM39A-210ENST00000490099 AKR1B1P15121 316 aa11.69□□□□□ -0.54
TMEM39A-210ENST00000490099 HDAC1Q13547 482 aaPredicted RBP11.69□□□□□ -0.54
TMEM39A-210ENST00000490099 COG2Q14746 738 aa11.69□□□□□ -0.54
TMEM39A-210ENST00000490099 TSHZ3Q63HK5 1081 aa11.69□□□□□ -0.54
TMEM39A-210ENST00000490099 OTUD7AQ8TE49 926 aaPredicted RBP11.69□□□□□ -0.54
TMEM39A-210ENST00000490099 LPAR1Q92633 364 aa11.69□□□□□ -0.54
TMEM39A-210ENST00000490099 NUDT12Q9BQG2 462 aa11.69□□□□□ -0.54
TMEM39A-210ENST00000490099 BCL11AQ9H165 835 aa11.69□□□□□ -0.54
TMEM39A-210ENST00000490099 RPAP3Q9H6T3 665 aaPredicted RBP11.69□□□□□ -0.54
TMEM39A-210ENST00000490099 HOXC10Q9NYD6 342 aa11.69□□□□□ -0.54
TMEM39A-210ENST00000490099 BTBD7Q9P203 1132 aa11.69□□□□□ -0.54
TMEM39A-210ENST00000490099 ADAMTS5Q9UNA0 930 aa11.69□□□□□ -0.54
TMEM39A-210ENST00000490099 NAV1Q8NEY1 1877 aa11.69□□□□□ -0.54
TMEM39A-210ENST00000490099 RPTORQ8N122 1335 aa11.68□□□□□ -0.54
TMEM39A-210ENST00000490099 SPDYE16A6NNV3 312 aaPredicted RBP11.68□□□□□ -0.54
TMEM39A-210ENST00000490099 GLRX3O76003 335 aaKnown RBP11.68□□□□□ -0.54
TMEM39A-210ENST00000490099 HOXC6P09630 235 aa11.68□□□□□ -0.54
TMEM39A-210ENST00000490099 AAMPQ13685 434 aa11.68□□□□□ -0.54
TMEM39A-210ENST00000490099 ZYXQ15942 572 aaKnown RBP11.68□□□□□ -0.54
TMEM39A-210ENST00000490099 GPR142Q7Z601 462 aa11.68□□□□□ -0.54
TMEM39A-210ENST00000490099 PLEKHH3Q7Z736 793 aa11.68□□□□□ -0.54
TMEM39A-210ENST00000490099 TRMT44Q8IYL2 757 aaKnown RBP11.68□□□□□ -0.54
TMEM39A-210ENST00000490099 TRIB2Q92519 343 aa11.68□□□□□ -0.54
TMEM39A-210ENST00000490099 DEFB118Q96PH6 123 aa11.68□□□□□ -0.54
TMEM39A-210ENST00000490099 CRBNQ96SW2 442 aa11.68□□□□□ -0.54
TMEM39A-210ENST00000490099 KANSL2Q9H9L4 492 aa11.68□□□□□ -0.54
TMEM39A-210ENST00000490099 STAP2Q9UGK3 403 aa11.68□□□□□ -0.54
TMEM39A-210ENST00000490099 MYH7P12883 1935 aa11.68□□□□□ -0.54
TMEM39A-210ENST00000490099 RLFQ13129 1914 aa11.68□□□□□ -0.54
TMEM39A-210ENST00000490099 BAZ2AQ9UIF9 1905 aaKnown RBP11.67□□□□□ -0.54
TMEM39A-210ENST00000490099 SLC15A5A6NIM6 579 aa11.67□□□□□ -0.54
TMEM39A-210ENST00000490099 CYP2B6P20813 491 aa11.67□□□□□ -0.54
TMEM39A-210ENST00000490099 NUBP1P53384 320 aa11.67□□□□□ -0.54
TMEM39A-210ENST00000490099 CCNA1P78396 465 aa11.67□□□□□ -0.54
TMEM39A-210ENST00000490099 TRIM32Q13049 653 aa11.67□□□□□ -0.54
TMEM39A-210ENST00000490099 TICAM2Q86XR7 235 aa11.67□□□□□ -0.54
TMEM39A-210ENST00000490099 ANKLE1Q8NAG6 615 aa11.67□□□□□ -0.54
TMEM39A-210ENST00000490099 SPOCK2Q92563 424 aa11.67□□□□□ -0.54
TMEM39A-210ENST00000490099 GCC1Q96CN9 775 aa11.67□□□□□ -0.54
TMEM39A-210ENST00000490099 DDRGK1Q96HY6 314 aa11.67□□□□□ -0.54
TMEM39A-210ENST00000490099 PAGR1Q9BTK6 254 aa11.67□□□□□ -0.54
TMEM39A-210ENST00000490099 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.67□□□□□ -0.54
TMEM39A-210ENST00000490099 VCPKMTQ9H867 229 aa11.67□□□□□ -0.54
TMEM39A-210ENST00000490099 EPB41L4AQ9HCS5 686 aaPredicted RBP11.67□□□□□ -0.54
TMEM39A-210ENST00000490099 ARPP21Q9UBL0 812 aaPredicted RBP11.67□□□□□ -0.54
TMEM39A-210ENST00000490099 ROBO3Q96MS0 1386 aa11.67□□□□□ -0.54
TMEM39A-210ENST00000490099 IGKV6D-41A0A0C4DH26 115 aa11.66□□□□□ -0.54
TMEM39A-210ENST00000490099 PATL2C9JE40 543 aaKnown RBP11.66□□□□□ -0.54
TMEM39A-210ENST00000490099 H0YGN5 161 aa11.66□□□□□ -0.54
TMEM39A-210ENST00000490099 MPHOSPH10O00566 681 aaKnown RBP11.66□□□□□ -0.54
TMEM39A-210ENST00000490099 ERC2O15083 957 aa11.66□□□□□ -0.54
TMEM39A-210ENST00000490099 GPAA1O43292 621 aa11.66□□□□□ -0.54
TMEM39A-210ENST00000490099 FARP2O94887 1054 aaPredicted RBP11.66□□□□□ -0.54
TMEM39A-210ENST00000490099 EEF2P13639 858 aaKnown RBP11.66□□□□□ -0.54
TMEM39A-210ENST00000490099 GNAT2P19087 354 aa11.66□□□□□ -0.54
TMEM39A-210ENST00000490099 RASA1P20936 1047 aa11.66□□□□□ -0.54
TMEM39A-210ENST00000490099 PTPREP23469 700 aa11.66□□□□□ -0.54
TMEM39A-210ENST00000490099 MAP2K5Q13163 448 aa11.66□□□□□ -0.54
TMEM39A-210ENST00000490099 GRB14Q14449 540 aa11.66□□□□□ -0.54
TMEM39A-210ENST00000490099 ZMYM1Q5SVZ6 1142 aa11.66□□□□□ -0.54
TMEM39A-210ENST00000490099 POTEHQ6S545 545 aa11.66□□□□□ -0.54
TMEM39A-210ENST00000490099 CLEC10AQ8IUN9 316 aa11.66□□□□□ -0.54
TMEM39A-210ENST00000490099 AMOTL1Q8IY63 956 aa11.66□□□□□ -0.54
TMEM39A-210ENST00000490099 MB21D1Q8N884 522 aa11.66□□□□□ -0.54
TMEM39A-210ENST00000490099 SHCBP1Q8NEM2 672 aa11.66□□□□□ -0.54
TMEM39A-210ENST00000490099 ARHGEF10LQ9HCE6 1279 aa11.66□□□□□ -0.54
TMEM39A-210ENST00000490099 HMX1Q9NP08 348 aaPredicted RBP11.66□□□□□ -0.54
TMEM39A-210ENST00000490099 OGDHLQ9ULD0 1010 aa11.66□□□□□ -0.54
TMEM39A-210ENST00000490099 M0R2C6 588 aa11.65□□□□□ -0.54
TMEM39A-210ENST00000490099 FOXP2O15409 715 aa11.65□□□□□ -0.54
TMEM39A-210ENST00000490099 TFRCP02786 760 aaKnown RBP11.65□□□□□ -0.54
TMEM39A-210ENST00000490099 MX1P20591 662 aa11.65□□□□□ -0.54
TMEM39A-210ENST00000490099 RGS2P41220 211 aa11.65□□□□□ -0.54
TMEM39A-210ENST00000490099 ICA1Q05084 483 aa11.65□□□□□ -0.54
TMEM39A-210ENST00000490099 CCL14Q16627 93 aa11.65□□□□□ -0.54
TMEM39A-210ENST00000490099 LRRFIP1Q32MZ4 808 aaKnown RBP11.65□□□□□ -0.54
TMEM39A-210ENST00000490099 LHX8Q68G74 356 aa11.65□□□□□ -0.54
TMEM39A-210ENST00000490099 SMC5Q8IY18 1101 aa11.65□□□□□ -0.54
TMEM39A-210ENST00000490099 MKL1Q969V6 931 aa11.65□□□□□ -0.54
TMEM39A-210ENST00000490099 APBA2Q99767 749 aa11.65□□□□□ -0.54
TMEM39A-210ENST00000490099 MOV10L1Q9BXT6 1211 aaKnown RBP11.65□□□□□ -0.54
TMEM39A-210ENST00000490099 PRO3102Q9H379 93 aa11.65□□□□□ -0.54
TMEM39A-210ENST00000490099 SH2D4AQ9H788 454 aa11.65□□□□□ -0.54
TMEM39A-210ENST00000490099 WDR46O15213 610 aaKnown RBP11.64□□□□□ -0.55
TMEM39A-210ENST00000490099 STRNO43815 780 aa11.64□□□□□ -0.55
TMEM39A-210ENST00000490099 CACNB2Q08289 660 aaPredicted RBP11.64□□□□□ -0.55
TMEM39A-210ENST00000490099 HABP4Q5JVS0 413 aaKnown RBP11.64□□□□□ -0.55
TMEM39A-210ENST00000490099 IFNL3Q8IZI9 196 aa11.64□□□□□ -0.55
TMEM39A-210ENST00000490099 ABRAQ8N0Z2 381 aa11.64□□□□□ -0.55
TMEM39A-210ENST00000490099 SEC62Q99442 399 aaKnown RBP11.64□□□□□ -0.55
TMEM39A-210ENST00000490099 HTATIP2Q9BUP3 242 aa11.64□□□□□ -0.55
TMEM39A-210ENST00000490099 SPATC1LQ9H0A9 340 aa11.64□□□□□ -0.55
TMEM39A-210ENST00000490099 NYAP2Q9P242 653 aa11.64□□□□□ -0.55
TMEM39A-210ENST00000490099 SYNPO2Q9UMS6 1093 aa11.64□□□□□ -0.55
TMEM39A-210ENST00000490099 GREB1LQ9C091 1923 aaPredicted RBP11.64□□□□□ -0.55
TMEM39A-210ENST00000490099 ZKSCAN1P17029 563 aaPredicted RBP11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms