RNA–Protein interactions for RNA: ENST00000486159.5

TMEM39A-208, Transcript of transmembrane protein 39A, humanhuman

TSL 3

Gene TMEM39A, Length 826 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-208ENST00000486159 VCAM1P19320 739 aa11.28□□□□□ -0.6
TMEM39A-208ENST00000486159 CACNB2Q08289 660 aaPredicted RBP11.28□□□□□ -0.6
TMEM39A-208ENST00000486159 MAP3K21Q5TCX8 1036 aa11.28□□□□□ -0.6
TMEM39A-208ENST00000486159 CATSPERGQ6ZRH7 1159 aa11.28□□□□□ -0.6
TMEM39A-208ENST00000486159 ERC1Q8IUD2 1116 aa11.28□□□□□ -0.6
TMEM39A-208ENST00000486159 SIAH1Q8IUQ4 282 aa11.28□□□□□ -0.6
TMEM39A-208ENST00000486159 C7orf61Q8IZ16 206 aa11.28□□□□□ -0.6
TMEM39A-208ENST00000486159 KIF1BPQ96EK5 621 aa11.28□□□□□ -0.6
TMEM39A-208ENST00000486159 C12orf42Q96LP6 360 aa11.28□□□□□ -0.6
TMEM39A-208ENST00000486159 FEZ1Q99689 392 aa11.28□□□□□ -0.6
TMEM39A-208ENST00000486159 NUDT12Q9BQG2 462 aa11.28□□□□□ -0.6
TMEM39A-208ENST00000486159 HTATIP2Q9BUP3 242 aa11.28□□□□□ -0.6
TMEM39A-208ENST00000486159 LNPKQ9C0E8 428 aa11.28□□□□□ -0.6
TMEM39A-208ENST00000486159 EHD4Q9H223 541 aa11.28□□□□□ -0.6
TMEM39A-208ENST00000486159 HMX1Q9NP08 348 aaPredicted RBP11.28□□□□□ -0.6
TMEM39A-208ENST00000486159 DCP1AQ9NPI6 582 aaPredicted RBP11.28□□□□□ -0.6
TMEM39A-208ENST00000486159 MCM9Q9NXL9 1143 aa11.28□□□□□ -0.6
TMEM39A-208ENST00000486159 ZMYND8Q9ULU4 1186 aaPredicted RBP11.28□□□□□ -0.6
TMEM39A-208ENST00000486159 BAZ2AQ9UIF9 1905 aaKnown RBP11.28□□□□□ -0.6
TMEM39A-208ENST00000486159 USP17L15C9J2P7 530 aa11.27□□□□□ -0.61
TMEM39A-208ENST00000486159 USP17L13C9JLJ4 530 aa11.27□□□□□ -0.61
TMEM39A-208ENST00000486159 USP17L11C9JVI0 530 aa11.27□□□□□ -0.61
TMEM39A-208ENST00000486159 USP17L18D6R9N7 530 aa11.27□□□□□ -0.61
TMEM39A-208ENST00000486159 USP17L22D6RA61 530 aa11.27□□□□□ -0.61
TMEM39A-208ENST00000486159 USP17L17D6RBQ6 530 aa11.27□□□□□ -0.61
TMEM39A-208ENST00000486159 USP17L19D6RCP7 530 aa11.27□□□□□ -0.61
TMEM39A-208ENST00000486159 USP17L20D6RJB6 530 aa11.27□□□□□ -0.61
TMEM39A-208ENST00000486159 MPHOSPH10O00566 681 aaKnown RBP11.27□□□□□ -0.61
TMEM39A-208ENST00000486159 EVI5O60447 810 aa11.27□□□□□ -0.61
TMEM39A-208ENST00000486159 RAB11FIP3O75154 756 aa11.27□□□□□ -0.61
TMEM39A-208ENST00000486159 IFIT2P09913 472 aaKnown RBP11.27□□□□□ -0.61
TMEM39A-208ENST00000486159 USP17L24Q0WX57 530 aa11.27□□□□□ -0.61
TMEM39A-208ENST00000486159 HSP90AB4PQ58FF6 505 aa11.27□□□□□ -0.61
TMEM39A-208ENST00000486159 POTEHQ6S545 545 aa11.27□□□□□ -0.61
TMEM39A-208ENST00000486159 PLEKHH3Q7Z736 793 aa11.27□□□□□ -0.61
TMEM39A-208ENST00000486159 TTC6Q86TZ1 520 aa11.27□□□□□ -0.61
TMEM39A-208ENST00000486159 CLASRPQ8N2M8 674 aaKnown RBP11.27□□□□□ -0.61
TMEM39A-208ENST00000486159 NPLOC4Q8TAT6 608 aa11.27□□□□□ -0.61
TMEM39A-208ENST00000486159 RPAP3Q9H6T3 665 aaPredicted RBP11.27□□□□□ -0.61
TMEM39A-208ENST00000486159 GINM1Q9NU53 330 aa11.27□□□□□ -0.61
TMEM39A-208ENST00000486159 PFASO15067 1338 aa11.27□□□□□ -0.61
TMEM39A-208ENST00000486159 SPDYE16A6NNV3 312 aaPredicted RBP11.26□□□□□ -0.61
TMEM39A-208ENST00000486159 MBD4O95243 580 aa11.26□□□□□ -0.61
TMEM39A-208ENST00000486159 AKR1B1P15121 316 aa11.26□□□□□ -0.61
TMEM39A-208ENST00000486159 ADD2P35612 726 aa11.26□□□□□ -0.61
TMEM39A-208ENST00000486159 WDR78Q5VTH9 848 aa11.26□□□□□ -0.61
TMEM39A-208ENST00000486159 TSHZ3Q63HK5 1081 aa11.26□□□□□ -0.61
TMEM39A-208ENST00000486159 LHX8Q68G74 356 aa11.26□□□□□ -0.61
TMEM39A-208ENST00000486159 NECAB2Q7Z6G3 386 aa11.26□□□□□ -0.61
TMEM39A-208ENST00000486159 LRCH3Q96II8 777 aa11.26□□□□□ -0.61
TMEM39A-208ENST00000486159 KIAA1683Q9H0B3 1180 aa11.26□□□□□ -0.61
TMEM39A-208ENST00000486159 PAG1Q9NWQ8 432 aa11.26□□□□□ -0.61
TMEM39A-208ENST00000486159 OGDHLQ9ULD0 1010 aa11.26□□□□□ -0.61
TMEM39A-208ENST00000486159 CIZ1Q9ULV3 898 aaPredicted RBP11.26□□□□□ -0.61
TMEM39A-208ENST00000486159 RLFQ13129 1914 aa11.26□□□□□ -0.61
TMEM39A-208ENST00000486159 ZKSCAN1P17029 563 aaPredicted RBP11.25□□□□□ -0.61
TMEM39A-208ENST00000486159 MAPK4P31152 587 aa11.25□□□□□ -0.61
TMEM39A-208ENST00000486159 TTF1Q15361 905 aaPredicted RBP11.25□□□□□ -0.61
TMEM39A-208ENST00000486159 STK11IPQ8N1F8 1099 aa11.25□□□□□ -0.61
TMEM39A-208ENST00000486159 TRPV1Q8NER1 839 aa11.25□□□□□ -0.61
TMEM39A-208ENST00000486159 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.25□□□□□ -0.61
TMEM39A-208ENST00000486159 CRNKL1Q9BZJ0 848 aaKnown RBP11.25□□□□□ -0.61
TMEM39A-208ENST00000486159 CABP5Q9NP86 173 aa11.25□□□□□ -0.61
TMEM39A-208ENST00000486159 RABGAP1Q9Y3P9 1069 aa11.25□□□□□ -0.61
TMEM39A-208ENST00000486159 NR2E3Q9Y5X4 410 aa11.25□□□□□ -0.61
TMEM39A-208ENST00000486159 COL6A3P12111 3177 aa11.24□□□□□ -0.61
TMEM39A-208ENST00000486159 IGSF3O75054 1194 aa11.24□□□□□ -0.61
TMEM39A-208ENST00000486159 XRCC5P13010 732 aaKnown RBP11.24□□□□□ -0.61
TMEM39A-208ENST00000486159 ATP5JP18859 108 aa11.24□□□□□ -0.61
TMEM39A-208ENST00000486159 PTPREP23469 700 aa11.24□□□□□ -0.61
TMEM39A-208ENST00000486159 CYP2C19P33261 490 aa11.24□□□□□ -0.61
TMEM39A-208ENST00000486159 RGS2P41220 211 aa11.24□□□□□ -0.61
TMEM39A-208ENST00000486159 MAP2K5Q13163 448 aa11.24□□□□□ -0.61
TMEM39A-208ENST00000486159 ANO1Q5XXA6 986 aa11.24□□□□□ -0.61
TMEM39A-208ENST00000486159 CCAR1Q8IX12 1150 aaKnown RBP11.24□□□□□ -0.61
TMEM39A-208ENST00000486159 SPICE1Q8N0Z3 855 aa11.24□□□□□ -0.61
TMEM39A-208ENST00000486159 HAUS7Q99871 368 aa11.24□□□□□ -0.61
TMEM39A-208ENST00000486159 LRRCC1Q9C099 1032 aa11.24□□□□□ -0.61
TMEM39A-208ENST00000486159 PUS7LQ9H0K6 701 aaKnown RBP11.24□□□□□ -0.61
TMEM39A-208ENST00000486159 OSBPL3Q9H4L5 887 aa11.24□□□□□ -0.61
TMEM39A-208ENST00000486159 C11orf49Q9H6J7 331 aa11.24□□□□□ -0.61
TMEM39A-208ENST00000486159 RANBP2P49792 3224 aaKnown RBP11.24□□□□□ -0.61
TMEM39A-208ENST00000486159 FRMPD3Q5JV73 1810 aa11.23□□□□□ -0.61
TMEM39A-208ENST00000486159 USP17L12C9JPN9 530 aa11.23□□□□□ -0.61
TMEM39A-208ENST00000486159 USP17L21D6R901 530 aa11.23□□□□□ -0.61
TMEM39A-208ENST00000486159 CDK8P49336 464 aa11.23□□□□□ -0.61
TMEM39A-208ENST00000486159 USP14P54578 494 aa11.23□□□□□ -0.61
TMEM39A-208ENST00000486159 LRRC26Q2I0M4 334 aa11.23□□□□□ -0.61
TMEM39A-208ENST00000486159 PLEKHM2Q8IWE5 1019 aa11.23□□□□□ -0.61
TMEM39A-208ENST00000486159 SOCS4Q8WXH5 440 aa11.23□□□□□ -0.61
TMEM39A-208ENST00000486159 APBA2Q99767 749 aa11.23□□□□□ -0.61
TMEM39A-208ENST00000486159 MOV10L1Q9BXT6 1211 aaKnown RBP11.23□□□□□ -0.61
TMEM39A-208ENST00000486159 NBPF3Q9H094 633 aa11.23□□□□□ -0.61
TMEM39A-208ENST00000486159 MYH8P13535 1937 aa11.23□□□□□ -0.61
TMEM39A-208ENST00000486159 C19orf67A6NJJ6 358 aa11.22□□□□□ -0.61
TMEM39A-208ENST00000486159 COBLO75128 1261 aa11.22□□□□□ -0.61
TMEM39A-208ENST00000486159 COL6A1P12109 1028 aa11.22□□□□□ -0.61
TMEM39A-208ENST00000486159 MYH7P12883 1935 aa11.22□□□□□ -0.61
TMEM39A-208ENST00000486159 PRAMEF19Q5SWL8 479 aa11.22□□□□□ -0.61
TMEM39A-208ENST00000486159 C12orf60Q5U649 245 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms