RNA–Protein interactions for RNA: ENST00000485140.1

VPS50-217, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-217ENST00000485140 RNF19AQ9NV58 838 aa6.11□□□□□ -1.43
VPS50-217ENST00000485140 RBM47A0AV96 593 aaKnown RBP6.1□□□□□ -1.43
VPS50-217ENST00000485140 HPXP02790 462 aa6.1□□□□□ -1.43
VPS50-217ENST00000485140 IMPDH2P12268 514 aa6.1□□□□□ -1.43
VPS50-217ENST00000485140 RAG1P15918 1043 aa6.1□□□□□ -1.43
VPS50-217ENST00000485140 RAP1GAPP47736 663 aa6.1□□□□□ -1.43
VPS50-217ENST00000485140 ZNF165P49910 485 aa6.1□□□□□ -1.43
VPS50-217ENST00000485140 JAG1P78504 1218 aa6.1□□□□□ -1.43
VPS50-217ENST00000485140 MLANAQ16655 118 aa6.1□□□□□ -1.43
VPS50-217ENST00000485140 GIPC2Q8TF65 315 aa6.1□□□□□ -1.43
VPS50-217ENST00000485140 SLC6A17Q9H1V8 727 aa6.1□□□□□ -1.43
VPS50-217ENST00000485140 EHMT1Q9H9B1 1298 aa6.1□□□□□ -1.43
VPS50-217ENST00000485140 KBTBD4Q9NVX7 518 aa6.1□□□□□ -1.43
VPS50-217ENST00000485140 KLHL3Q9UH77 587 aa6.1□□□□□ -1.43
VPS50-217ENST00000485140 GGT7Q9UJ14 662 aa6.1□□□□□ -1.43
VPS50-217ENST00000485140 GREM1O60565 184 aa6.09□□□□□ -1.43
VPS50-217ENST00000485140 ESR1P03372 595 aa6.09□□□□□ -1.43
VPS50-217ENST00000485140 EGR3Q06889 387 aa6.09□□□□□ -1.43
VPS50-217ENST00000485140 MRPL58Q14197 206 aaKnown RBP6.09□□□□□ -1.43
VPS50-217ENST00000485140 TMCO4Q5TGY1 634 aa6.09□□□□□ -1.43
VPS50-217ENST00000485140 CDCP2Q5VXM1 449 aa6.09□□□□□ -1.43
VPS50-217ENST00000485140 RNF111Q6ZNA4 994 aa6.09□□□□□ -1.43
VPS50-217ENST00000485140 IRF2BP1Q8IU81 584 aa6.09□□□□□ -1.43
VPS50-217ENST00000485140 ANKS4BQ8N8V4 417 aa6.09□□□□□ -1.43
VPS50-217ENST00000485140 ZSCAN18Q8TBC5 510 aaPredicted RBP6.09□□□□□ -1.43
VPS50-217ENST00000485140 SYTL5Q8TDW5 730 aaPredicted RBP6.09□□□□□ -1.43
VPS50-217ENST00000485140 Q96M66 194 aa6.09□□□□□ -1.43
VPS50-217ENST00000485140 SLC26A8Q96RN1 970 aa6.09□□□□□ -1.43
VPS50-217ENST00000485140 EPB41L4BQ9H329 900 aa6.09□□□□□ -1.43
VPS50-217ENST00000485140 CWC22Q9HCG8 908 aaKnown RBP6.09□□□□□ -1.43
VPS50-217ENST00000485140 METTL5Q9NRN9 209 aaKnown RBP6.09□□□□□ -1.43
VPS50-217ENST00000485140 PRR13Q9NZ81 148 aa6.09□□□□□ -1.43
VPS50-217ENST00000485140 CORINQ9Y5Q5 1042 aa6.09□□□□□ -1.43
VPS50-217ENST00000485140 ZNF503-AS2A6NEH8 195 aa6.08□□□□□ -1.44
VPS50-217ENST00000485140 MINDY4BA8MYZ0 360 aa6.08□□□□□ -1.44
VPS50-217ENST00000485140 NFIBO00712 420 aa6.08□□□□□ -1.44
VPS50-217ENST00000485140 FAM160A1Q05DH4 1040 aa6.08□□□□□ -1.44
VPS50-217ENST00000485140 MESP2Q0VG99 397 aa6.08□□□□□ -1.44
VPS50-217ENST00000485140 ZNF648Q5T619 568 aaPredicted RBP6.08□□□□□ -1.44
VPS50-217ENST00000485140 CNTNAP4Q9C0A0 1308 aa6.07□□□□□ -1.44
VPS50-217ENST00000485140 GARTP22102 1010 aa6.07□□□□□ -1.44
VPS50-217ENST00000485140 APOBRQ0VD83 1088 aa6.07□□□□□ -1.44
VPS50-217ENST00000485140 ANKLE2Q86XL3 938 aa6.07□□□□□ -1.44
VPS50-217ENST00000485140 ZNF655Q8N720 491 aaPredicted RBP6.07□□□□□ -1.44
VPS50-217ENST00000485140 DAGLBQ8NCG7 672 aa6.07□□□□□ -1.44
VPS50-217ENST00000485140 ZNF296Q8WUU4 475 aaPredicted RBP6.07□□□□□ -1.44
VPS50-217ENST00000485140 DHRS1Q96LJ7 313 aa6.07□□□□□ -1.44
VPS50-217ENST00000485140 SPATA32Q96LK8 384 aa6.07□□□□□ -1.44
VPS50-217ENST00000485140 NT5C1AQ9BXI3 368 aa6.07□□□□□ -1.44
VPS50-217ENST00000485140 C19orf73Q9NVV2 129 aa6.07□□□□□ -1.44
VPS50-217ENST00000485140 POLR3KQ9Y2Y1 108 aaPredicted RBP6.07□□□□□ -1.44
VPS50-217ENST00000485140 SSU72P8A0A1W2PR75 194 aa6.06□□□□□ -1.44
VPS50-217ENST00000485140 UPK3BL1B0FP48 263 aa6.06□□□□□ -1.44
VPS50-217ENST00000485140 UPK3BL2E5RIL1 263 aa6.06□□□□□ -1.44
VPS50-217ENST00000485140 OLFML2BQ68BL8 750 aa6.06□□□□□ -1.44
VPS50-217ENST00000485140 FBXL19Q6PCT2 694 aa6.06□□□□□ -1.44
VPS50-217ENST00000485140 DCP1AQ9NPI6 582 aaPredicted RBP6.06□□□□□ -1.44
VPS50-217ENST00000485140 PCDHB14Q9Y5E9 798 aa6.06□□□□□ -1.44
VPS50-217ENST00000485140 SLC22A31A6NKX4 558 aa6.05□□□□□ -1.44
VPS50-217ENST00000485140 MEIS3P2A8K0S8 358 aa6.05□□□□□ -1.44
VPS50-217ENST00000485140 CHURC1-FNTBB4DL54 471 aa6.05□□□□□ -1.44
VPS50-217ENST00000485140 GRIN3BO60391 1043 aa6.05□□□□□ -1.44
VPS50-217ENST00000485140 CLEC3AO75596 197 aa6.05□□□□□ -1.44
VPS50-217ENST00000485140 TMEM253P0C7T8 217 aa6.05□□□□□ -1.44
VPS50-217ENST00000485140 HK2P52789 917 aa6.05□□□□□ -1.44
VPS50-217ENST00000485140 PCBP3P57721 371 aaKnown RBP6.05□□□□□ -1.44
VPS50-217ENST00000485140 NMIQ13287 307 aaPredicted RBP6.05□□□□□ -1.44
VPS50-217ENST00000485140 COL9A2Q14055 689 aaPredicted RBP6.05□□□□□ -1.44
VPS50-217ENST00000485140 KIAA0825Q8IV33 1275 aa6.05□□□□□ -1.44
VPS50-217ENST00000485140 BAHD1Q8TBE0 780 aaPredicted RBP6.05□□□□□ -1.44
VPS50-217ENST00000485140 LIN37Q96GY3 246 aaPredicted RBP6.05□□□□□ -1.44
VPS50-217ENST00000485140 KIF2CQ99661 725 aa6.05□□□□□ -1.44
VPS50-217ENST00000485140 CNNM2Q9H8M5 875 aa6.05□□□□□ -1.44
VPS50-217ENST00000485140 DNAJC25-GNG10A0A024R161 153 aa6.04□□□□□ -1.44
VPS50-217ENST00000485140 HRKO00198 91 aa6.04□□□□□ -1.44
VPS50-217ENST00000485140 SEMA7AO75326 666 aa6.04□□□□□ -1.44
VPS50-217ENST00000485140 ZGLP1P0C6A0 271 aa6.04□□□□□ -1.44
VPS50-217ENST00000485140 GLDCP23378 1020 aa6.04□□□□□ -1.44
VPS50-217ENST00000485140 ZNF76P36508 570 aa6.04□□□□□ -1.44
VPS50-217ENST00000485140 KIR2DL1P43626 348 aaPredicted RBP6.04□□□□□ -1.44
VPS50-217ENST00000485140 KIR2DL2P43627 348 aaPredicted RBP6.04□□□□□ -1.44
VPS50-217ENST00000485140 ARSHQ5FYA8 562 aa6.04□□□□□ -1.44
VPS50-217ENST00000485140 FYB2Q5VWT5 728 aa6.04□□□□□ -1.44
VPS50-217ENST00000485140 INTS3Q68E01 1043 aaKnown RBP6.04□□□□□ -1.44
VPS50-217ENST00000485140 SYDE1Q6ZW31 735 aaPredicted RBP6.04□□□□□ -1.44
VPS50-217ENST00000485140 NLRC3Q7RTR2 1065 aa6.04□□□□□ -1.44
VPS50-217ENST00000485140 SIAH1Q8IUQ4 282 aa6.04□□□□□ -1.44
VPS50-217ENST00000485140 SLITRK4Q8IW52 837 aa6.04□□□□□ -1.44
VPS50-217ENST00000485140 TMEM87AQ8NBN3 555 aa6.04□□□□□ -1.44
VPS50-217ENST00000485140 SMARCC1Q92922 1105 aaPredicted RBP6.04□□□□□ -1.44
VPS50-217ENST00000485140 NKD1Q969G9 470 aa6.04□□□□□ -1.44
VPS50-217ENST00000485140 ADAMTS10Q9H324 1103 aa6.04□□□□□ -1.44
VPS50-217ENST00000485140 NSUN3Q9H649 340 aaKnown RBP6.04□□□□□ -1.44
VPS50-217ENST00000485140 BRMS1Q9HCU9 246 aa6.04□□□□□ -1.44
VPS50-217ENST00000485140 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP6.04□□□□□ -1.44
VPS50-217ENST00000485140 PCDHA11Q9Y5I1 949 aa6.04□□□□□ -1.44
VPS50-217ENST00000485140 IQCJ-SCHIP1C9J366 451 aaPredicted RBP6.03□□□□□ -1.44
VPS50-217ENST00000485140 TLR3O15455 904 aaKnown RBP6.03□□□□□ -1.44
VPS50-217ENST00000485140 PEX10O60683 326 aa6.03□□□□□ -1.44
VPS50-217ENST00000485140 RALGPS1Q5JS13 557 aa6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms