RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 CABP4P57796 275 aa15.01□□□□□ -0.01
USP40-214ENST00000483519 GSDMAQ96QA5 445 aa15.01□□□□□ -0.01
USP40-214ENST00000483519 SEC31BQ9NQW1 1179 aa15.01□□□□□ -0.01
USP40-214ENST00000483519 IFIT3O14879 490 aaKnown RBP15.01□□□□□ -0.01
USP40-214ENST00000483519 TFRCP02786 760 aaKnown RBP15.01□□□□□ -0.01
USP40-214ENST00000483519 ERVK-24P63145 666 aa15.01□□□□□ -0.01
USP40-214ENST00000483519 DNAJC21Q5F1R6 531 aaKnown RBP15.01□□□□□ -0.01
USP40-214ENST00000483519 TTLL7Q6ZT98 887 aa15.01□□□□□ -0.01
USP40-214ENST00000483519 ZCRB1Q8TBF4 217 aaKnown RBP15.01□□□□□ -0.01
USP40-214ENST00000483519 AATFQ9NY61 560 aaKnown RBP eCLIP15.01□□□□□ -0.01
USP40-214ENST00000483519 KCNJ14Q9UNX9 436 aa15.01□□□□□ -0.01
USP40-214ENST00000483519 NBPF26B4DH59 902 aa15.01□□□□□ -0.01
USP40-214ENST00000483519 UBE2Q2LH0YL09 131 aa15.01□□□□□ -0.01
USP40-214ENST00000483519 CD44P16070 742 aaKnown RBP15.01□□□□□ -0.01
USP40-214ENST00000483519 AKAP17AQ02040 695 aaKnown RBP15.01□□□□□ -0.01
USP40-214ENST00000483519 SPAG1Q07617 926 aa15.01□□□□□ -0.01
USP40-214ENST00000483519 NBPF14Q5TI25 921 aa15.01□□□□□ -0.01
USP40-214ENST00000483519 NCAPH2Q6IBW4 605 aa15.01□□□□□ -0.01
USP40-214ENST00000483519 NBPF10Q6P3W6 841 aaKnown RBP15.01□□□□□ -0.01
USP40-214ENST00000483519 PI16Q6UXB8 463 aa15.01□□□□□ -0.01
USP40-214ENST00000483519 NBPF15Q8N660 670 aa15.01□□□□□ -0.01
USP40-214ENST00000483519 ANKRD20A12PQ8NF67 263 aa15.01□□□□□ -0.01
USP40-214ENST00000483519 NKX2-3Q8TAU0 364 aa15.01□□□□□ -0.01
USP40-214ENST00000483519 ZBTB9Q96C00 473 aa15.01□□□□□ -0.01
USP40-214ENST00000483519 NUP88Q99567 741 aaPredicted RBP15.01□□□□□ -0.01
USP40-214ENST00000483519 DEXIO95424 95 aa15□□□□□ -0.01
USP40-214ENST00000483519 USP14P54578 494 aa15□□□□□ -0.01
USP40-214ENST00000483519 UBE3CQ15386 1083 aa15□□□□□ -0.01
USP40-214ENST00000483519 CICQ96RK0 1608 aaPredicted RBP15□□□□□ -0.01
USP40-214ENST00000483519 MYH8P13535 1937 aa15□□□□□ -0.01
USP40-214ENST00000483519 N4BP3O15049 544 aa15□□□□□ -0.01
USP40-214ENST00000483519 CPP00450 1065 aa15□□□□□ -0.01
USP40-214ENST00000483519 AFMP43652 599 aa15□□□□□ -0.01
USP40-214ENST00000483519 SMARCC1Q92922 1105 aaPredicted RBP15□□□□□ -0.01
USP40-214ENST00000483519 RPGRIP1Q96KN7 1286 aa15□□□□□ -0.01
USP40-214ENST00000483519 CNNM2Q9H8M5 875 aa15□□□□□ -0.01
USP40-214ENST00000483519 TNS2Q63HR2 1409 aa15□□□□□ -0.01
USP40-214ENST00000483519 TARSL2A2RTX5 802 aaKnown RBP14.99□□□□□ -0.01
USP40-214ENST00000483519 PRPF6O94906 941 aaKnown RBP14.99□□□□□ -0.01
USP40-214ENST00000483519 SYF2O95926 243 aaKnown RBP14.99□□□□□ -0.01
USP40-214ENST00000483519 GUCY1A2P33402 732 aa14.99□□□□□ -0.01
USP40-214ENST00000483519 CCT6AP40227 531 aaKnown RBP14.99□□□□□ -0.01
USP40-214ENST00000483519 EIF5P55010 431 aaKnown RBP14.99□□□□□ -0.01
USP40-214ENST00000483519 RTN1Q16799 776 aa14.99□□□□□ -0.01
USP40-214ENST00000483519 USP49Q70CQ1 688 aa14.99□□□□□ -0.01
USP40-214ENST00000483519 TRAPPC11Q7Z392 1133 aa14.99□□□□□ -0.01
USP40-214ENST00000483519 SH3RF1Q7Z6J0 888 aa14.99□□□□□ -0.01
USP40-214ENST00000483519 PAGE5Q96GU1 130 aa14.99□□□□□ -0.01
USP40-214ENST00000483519 ZBTB3Q9H5J0 574 aa14.99□□□□□ -0.01
USP40-214ENST00000483519 LIMA1Q9UHB6 759 aaKnown RBP14.99□□□□□ -0.01
USP40-214ENST00000483519 HPCAL4Q9UM19 191 aa14.99□□□□□ -0.01
USP40-214ENST00000483519 CCDC196A0A1B0GTZ2 297 aa14.99□□□□□ -0.01
USP40-214ENST00000483519 MCAMP43121 646 aa14.99□□□□□ -0.01
USP40-214ENST00000483519 KRT27Q7Z3Y8 459 aa14.99□□□□□ -0.01
USP40-214ENST00000483519 ZNF526Q8TF50 670 aaPredicted RBP14.99□□□□□ -0.01
USP40-214ENST00000483519 SLF1Q9BQI6 1058 aa14.99□□□□□ -0.01
USP40-214ENST00000483519 PCDH11XQ9BZA7 1347 aa14.98□□□□□ -0.01
USP40-214ENST00000483519 PCDH11YQ9BZA8 1340 aa14.98□□□□□ -0.01
USP40-214ENST00000483519 ERVV-2B6SEH9 535 aa14.98□□□□□ -0.01
USP40-214ENST00000483519 PPP1R3GB7ZBB8 358 aa14.98□□□□□ -0.01
USP40-214ENST00000483519 PSMD14O00487 310 aa14.98□□□□□ -0.01
USP40-214ENST00000483519 CLSTN1O94985 981 aa14.98□□□□□ -0.01
USP40-214ENST00000483519 ABL1P00519 1130 aa14.98□□□□□ -0.01
USP40-214ENST00000483519 ATP2B1P20020 1258 aa14.98□□□□□ -0.01
USP40-214ENST00000483519 GUCY2CP25092 1073 aa14.98□□□□□ -0.01
USP40-214ENST00000483519 CKAP4Q07065 602 aaKnown RBP14.98□□□□□ -0.01
USP40-214ENST00000483519 DPYDQ12882 1025 aa14.98□□□□□ -0.01
USP40-214ENST00000483519 NR5A1Q13285 461 aa14.98□□□□□ -0.01
USP40-214ENST00000483519 KRT31Q15323 416 aa14.98□□□□□ -0.01
USP40-214ENST00000483519 DEF6Q9H4E7 631 aa14.98□□□□□ -0.01
USP40-214ENST00000483519 CTNND2Q9UQB3 1225 aa14.98□□□□□ -0.01
USP40-214ENST00000483519 A0A087WUV0 522 aaPredicted RBP14.98□□□□□ -0.01
USP40-214ENST00000483519 TRIM75PA6NK02 468 aa14.98□□□□□ -0.01
USP40-214ENST00000483519 STIM1Q13586 685 aa14.98□□□□□ -0.01
USP40-214ENST00000483519 SART3Q15020 963 aaKnown RBP14.98□□□□□ -0.01
USP40-214ENST00000483519 ALX1Q15699 326 aa14.98□□□□□ -0.01
USP40-214ENST00000483519 COG1Q8WTW3 980 aa14.98□□□□□ -0.01
USP40-214ENST00000483519 ZNF512BQ96KM6 892 aaPredicted RBP14.98□□□□□ -0.01
USP40-214ENST00000483519 CRACR2AQ9BSW2 395 aa14.98□□□□□ -0.01
USP40-214ENST00000483519 KRT23Q9C075 422 aa14.98□□□□□ -0.01
USP40-214ENST00000483519 HAUS4Q9H6D7 363 aa14.98□□□□□ -0.01
USP40-214ENST00000483519 GEMIN8Q9NWZ8 242 aaKnown RBP14.98□□□□□ -0.01
USP40-214ENST00000483519 LRRC10BA6NIK2 292 aa14.97□□□□□ -0.01
USP40-214ENST00000483519 CYP27B1O15528 508 aa14.97□□□□□ -0.01
USP40-214ENST00000483519 IDH1O75874 414 aaKnown RBP14.97□□□□□ -0.01
USP40-214ENST00000483519 KRT9P35527 623 aa14.97□□□□□ -0.01
USP40-214ENST00000483519 TADA2BQ86TJ2 420 aa14.97□□□□□ -0.01
USP40-214ENST00000483519 AIDAQ96BJ3 306 aa14.97□□□□□ -0.01
USP40-214ENST00000483519 PSMD1Q99460 953 aa14.97□□□□□ -0.01
USP40-214ENST00000483519 CABP5Q9NP86 173 aa14.97□□□□□ -0.01
USP40-214ENST00000483519 ZSWIM5Q9P217 1185 aa14.97□□□□□ -0.01
USP40-214ENST00000483519 GUCA1BQ9UMX6 200 aa14.97□□□□□ -0.01
USP40-214ENST00000483519 ZNF532Q9HCE3 1301 aa14.97□□□□□ -0.01
USP40-214ENST00000483519 BMP15O95972 392 aa14.97□□□□□ -0.01
USP40-214ENST00000483519 IFIT5Q13325 482 aaKnown RBP14.97□□□□□ -0.01
USP40-214ENST00000483519 EHBP1Q8NDI1 1231 aa14.97□□□□□ -0.01
USP40-214ENST00000483519 FERMT2Q96AC1 680 aa14.97□□□□□ -0.01
USP40-214ENST00000483519 SAR1BQ9Y6B6 198 aa14.97□□□□□ -0.01
USP40-214ENST00000483519 EPN1Q9Y6I3 576 aaPredicted RBP14.97□□□□□ -0.01
USP40-214ENST00000483519 NDUFA10O95299 355 aa14.96□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms