RNA–Protein interactions for RNA: ENST00000481502.5

SYNE1-225, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 585 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-225ENST00000481502 TMX3Q96JJ7 454 aa9.64□□□□□ -0.87
SYNE1-225ENST00000481502 HHIPL1Q96JK4 782 aa9.64□□□□□ -0.87
SYNE1-225ENST00000481502 GBA2Q9HCG7 927 aaPredicted RBP9.64□□□□□ -0.87
SYNE1-225ENST00000481502 CWC22Q9HCG8 908 aaKnown RBP9.64□□□□□ -0.87
SYNE1-225ENST00000481502 GOPCQ9HD26 462 aa9.64□□□□□ -0.87
SYNE1-225ENST00000481502 CLIP2Q9UDT6 1046 aa9.64□□□□□ -0.87
SYNE1-225ENST00000481502 DAXXQ9UER7 740 aaPredicted RBP9.64□□□□□ -0.87
SYNE1-225ENST00000481502 TPCN1Q9ULQ1 816 aa9.64□□□□□ -0.87
SYNE1-225ENST00000481502 KIF3AQ9Y496 699 aa9.64□□□□□ -0.87
SYNE1-225ENST00000481502 MYH8P13535 1937 aa9.64□□□□□ -0.87
SYNE1-225ENST00000481502 KLF18A0A0U1RQI7 1052 aa9.63□□□□□ -0.87
SYNE1-225ENST00000481502 SPDYE5A6NIY4 337 aa9.63□□□□□ -0.87
SYNE1-225ENST00000481502 USP17L10C9JJH3 530 aa9.63□□□□□ -0.87
SYNE1-225ENST00000481502 POTEIP0CG38 1075 aa9.63□□□□□ -0.87
SYNE1-225ENST00000481502 POTEJP0CG39 1038 aa9.63□□□□□ -0.87
SYNE1-225ENST00000481502 FDX1P10109 184 aa9.63□□□□□ -0.87
SYNE1-225ENST00000481502 EEF2P13639 858 aaKnown RBP9.63□□□□□ -0.87
SYNE1-225ENST00000481502 METAP2P50579 478 aaKnown RBP eCLIP9.63□□□□□ -0.87
SYNE1-225ENST00000481502 BACE1P56817 501 aa9.63□□□□□ -0.87
SYNE1-225ENST00000481502 HMGN5P82970 282 aaKnown RBP9.63□□□□□ -0.87
SYNE1-225ENST00000481502 APOBRQ0VD83 1088 aa9.63□□□□□ -0.87
SYNE1-225ENST00000481502 TRAF1Q13077 416 aa9.63□□□□□ -0.87
SYNE1-225ENST00000481502 RRP1BQ14684 758 aaKnown RBP9.63□□□□□ -0.87
SYNE1-225ENST00000481502 RAB3GAP1Q15042 981 aa9.63□□□□□ -0.87
SYNE1-225ENST00000481502 ME3Q16798 604 aa9.63□□□□□ -0.87
SYNE1-225ENST00000481502 ASPRV1Q53RT3 343 aa9.63□□□□□ -0.87
SYNE1-225ENST00000481502 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.63□□□□□ -0.87
SYNE1-225ENST00000481502 SIAH1Q8IUQ4 282 aa9.63□□□□□ -0.87
SYNE1-225ENST00000481502 ZNF280CQ8ND82 737 aa9.63□□□□□ -0.87
SYNE1-225ENST00000481502 GTF3C6Q969F1 213 aa9.63□□□□□ -0.87
SYNE1-225ENST00000481502 C12orf42Q96LP6 360 aa9.63□□□□□ -0.87
SYNE1-225ENST00000481502 IPO9Q96P70 1041 aaKnown RBP9.63□□□□□ -0.87
SYNE1-225ENST00000481502 ZKSCAN3Q9BRR0 538 aa9.63□□□□□ -0.87
SYNE1-225ENST00000481502 PNMA2Q9UL42 364 aa9.63□□□□□ -0.87
SYNE1-225ENST00000481502 PAPPA2Q9BXP8 1791 aa9.63□□□□□ -0.87
SYNE1-225ENST00000481502 PALM3A6NDB9 673 aaPredicted RBP9.62□□□□□ -0.87
SYNE1-225ENST00000481502 FAM196BA6NMK8 535 aa9.62□□□□□ -0.87
SYNE1-225ENST00000481502 F5H6K3 240 aa9.62□□□□□ -0.87
SYNE1-225ENST00000481502 CPLX1O14810 134 aa9.62□□□□□ -0.87
SYNE1-225ENST00000481502 NMT2O60551 498 aa9.62□□□□□ -0.87
SYNE1-225ENST00000481502 GDF11O95390 407 aa9.62□□□□□ -0.87
SYNE1-225ENST00000481502 ZBTB48P10074 688 aaPredicted RBP9.62□□□□□ -0.87
SYNE1-225ENST00000481502 IFNAR1P17181 557 aa9.62□□□□□ -0.87
SYNE1-225ENST00000481502 INPP5BP32019 993 aa9.62□□□□□ -0.87
SYNE1-225ENST00000481502 KLRC3Q07444 240 aa9.62□□□□□ -0.87
SYNE1-225ENST00000481502 PPIL2Q13356 520 aa9.62□□□□□ -0.87
SYNE1-225ENST00000481502 GRM4Q14833 912 aa9.62□□□□□ -0.87
SYNE1-225ENST00000481502 PRAMEF18Q5VWM3 479 aa9.62□□□□□ -0.87
SYNE1-225ENST00000481502 NKX2-3Q8TAU0 364 aa9.62□□□□□ -0.87
SYNE1-225ENST00000481502 WASF1Q92558 559 aa9.62□□□□□ -0.87
SYNE1-225ENST00000481502 TCEANC2Q96MN5 208 aa9.62□□□□□ -0.87
SYNE1-225ENST00000481502 LRRC2Q9BYS8 371 aa9.62□□□□□ -0.87
SYNE1-225ENST00000481502 VCPKMTQ9H867 229 aa9.62□□□□□ -0.87
SYNE1-225ENST00000481502 BRPF3Q9ULD4 1205 aa9.62□□□□□ -0.87
SYNE1-225ENST00000481502 HPS5Q9UPZ3 1129 aa9.62□□□□□ -0.87
SYNE1-225ENST00000481502 KCNH4Q9UQ05 1017 aa9.62□□□□□ -0.87
SYNE1-225ENST00000481502 AFG3L2Q9Y4W6 797 aa9.62□□□□□ -0.87
SYNE1-225ENST00000481502 GOLGA8BA8MQT2 603 aa9.61□□□□□ -0.87
SYNE1-225ENST00000481502 hCG_1984214I3L0E3 225 aa9.61□□□□□ -0.87
SYNE1-225ENST00000481502 WDR46O15213 610 aaKnown RBP9.61□□□□□ -0.87
SYNE1-225ENST00000481502 CELF2O95319 508 aaKnown RBP9.61□□□□□ -0.87
SYNE1-225ENST00000481502 CD2BP2O95400 341 aaKnown RBP9.61□□□□□ -0.87
SYNE1-225ENST00000481502 PARP1P09874 1014 aaKnown RBP9.61□□□□□ -0.87
SYNE1-225ENST00000481502 PDHBP11177 359 aa9.61□□□□□ -0.87
SYNE1-225ENST00000481502 PDCP20941 246 aa9.61□□□□□ -0.87
SYNE1-225ENST00000481502 INHBEP58166 350 aa9.61□□□□□ -0.87
SYNE1-225ENST00000481502 COL9A3Q14050 684 aaPredicted RBP9.61□□□□□ -0.87
SYNE1-225ENST00000481502 VGLL4Q14135 290 aa9.61□□□□□ -0.87
SYNE1-225ENST00000481502 TTLL12Q14166 644 aaPredicted RBP9.61□□□□□ -0.87
SYNE1-225ENST00000481502 RTN1Q16799 776 aa9.61□□□□□ -0.87
SYNE1-225ENST00000481502 USP17L2Q6R6M4 530 aa9.61□□□□□ -0.87
SYNE1-225ENST00000481502 BTNL9Q6UXG8 535 aa9.61□□□□□ -0.87
SYNE1-225ENST00000481502 FAM160B2Q86V87 743 aa9.61□□□□□ -0.87
SYNE1-225ENST00000481502 ZNF713Q8N859 430 aaPredicted RBP9.61□□□□□ -0.87
SYNE1-225ENST00000481502 ZNF784Q8NCA9 323 aaPredicted RBP9.61□□□□□ -0.87
SYNE1-225ENST00000481502 PROCA1Q8NCQ7 364 aaPredicted RBP9.61□□□□□ -0.87
SYNE1-225ENST00000481502 SMARCC2Q8TAQ2 1214 aa9.61□□□□□ -0.87
SYNE1-225ENST00000481502 ZNF526Q8TF50 670 aaPredicted RBP9.61□□□□□ -0.87
SYNE1-225ENST00000481502 CHURC1Q8WUH1 139 aa9.61□□□□□ -0.87
SYNE1-225ENST00000481502 SLC10A4Q96EP9 437 aa9.61□□□□□ -0.87
SYNE1-225ENST00000481502 SPZ1Q9BXG8 430 aa9.61□□□□□ -0.87
SYNE1-225ENST00000481502 RNF26Q9BY78 433 aaPredicted RBP9.61□□□□□ -0.87
SYNE1-225ENST00000481502 MAF1Q9H063 256 aa9.61□□□□□ -0.87
SYNE1-225ENST00000481502 SNCAIPQ9Y6H5 919 aa9.61□□□□□ -0.87
SYNE1-225ENST00000481502 ZHX2Q9Y6X8 837 aa9.61□□□□□ -0.87
SYNE1-225ENST00000481502 MYPNQ86TC9 1320 aa9.6□□□□□ -0.87
SYNE1-225ENST00000481502 STK36Q9NRP7 1315 aa9.6□□□□□ -0.87
SYNE1-225ENST00000481502 DOCK1Q14185 1865 aa9.6□□□□□ -0.87
SYNE1-225ENST00000481502 A0A1W2PRG0 241 aa9.6□□□□□ -0.87
SYNE1-225ENST00000481502 GOLGA8AA7E2F4 631 aa9.6□□□□□ -0.87
SYNE1-225ENST00000481502 HSP90AA1P07900 732 aaKnown RBP9.6□□□□□ -0.87
SYNE1-225ENST00000481502 BMP3P12645 472 aa9.6□□□□□ -0.87
SYNE1-225ENST00000481502 SLC1A4P43007 532 aa9.6□□□□□ -0.87
SYNE1-225ENST00000481502 JAG1P78504 1218 aa9.6□□□□□ -0.87
SYNE1-225ENST00000481502 ZNF543Q08ER8 600 aa9.6□□□□□ -0.87
SYNE1-225ENST00000481502 SCRN1Q12765 414 aa9.6□□□□□ -0.87
SYNE1-225ENST00000481502 NTRK3Q16288 839 aa9.6□□□□□ -0.87
SYNE1-225ENST00000481502 CST9Q5W186 159 aa9.6□□□□□ -0.87
SYNE1-225ENST00000481502 SLFN13Q68D06 897 aa9.6□□□□□ -0.87
SYNE1-225ENST00000481502 FASTKD5Q7L8L6 764 aaKnown RBP9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms