RNA–Protein interactions for RNA: ENST00000477421.2

COL27A1-204, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 2

Gene COL27A1, Length 3,991 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-204ENST00000477421 CCDC122Q5T0U0 273 aa12.41□□□□□ -0.42
COL27A1-204ENST00000477421 RBM26Q5T8P6 1007 aaKnown RBP12.41□□□□□ -0.42
COL27A1-204ENST00000477421 CNGA4Q8IV77 575 aa12.41□□□□□ -0.42
COL27A1-204ENST00000477421 TAF4BQ92750 862 aa12.41□□□□□ -0.42
COL27A1-204ENST00000477421 PKD2L1Q9P0L9 805 aa12.41□□□□□ -0.42
COL27A1-204ENST00000477421 ARPP21Q9UBL0 812 aaPredicted RBP12.41□□□□□ -0.42
COL27A1-204ENST00000477421 MINPP1Q9UNW1 487 aa12.41□□□□□ -0.42
COL27A1-204ENST00000477421 PXDNLA1KZ92 1463 aa12.41□□□□□ -0.42
COL27A1-204ENST00000477421 PAFAH1B1P43034 410 aa12.41□□□□□ -0.42
COL27A1-204ENST00000477421 BTDP43251 543 aa12.41□□□□□ -0.42
COL27A1-204ENST00000477421 LMAN1P49257 510 aa12.41□□□□□ -0.42
COL27A1-204ENST00000477421 NONOQ15233 471 aaKnown RBP eCLIP12.41□□□□□ -0.42
COL27A1-204ENST00000477421 KDM6AO15550 1401 aaPredicted RBP12.41□□□□□ -0.42
COL27A1-204ENST00000477421 UBN2Q6ZU65 1347 aa12.41□□□□□ -0.42
COL27A1-204ENST00000477421 TRAF5O00463 557 aa12.41□□□□□ -0.42
COL27A1-204ENST00000477421 PLS1Q14651 629 aa12.41□□□□□ -0.42
COL27A1-204ENST00000477421 PPP2R5BQ15173 497 aa12.41□□□□□ -0.42
COL27A1-204ENST00000477421 KIAA0825Q8IV33 1275 aa12.41□□□□□ -0.42
COL27A1-204ENST00000477421 FAM114A1Q8IWE2 563 aa12.41□□□□□ -0.42
COL27A1-204ENST00000477421 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.41□□□□□ -0.42
COL27A1-204ENST00000477421 NOC4LQ9BVI4 516 aaKnown RBP12.41□□□□□ -0.42
COL27A1-204ENST00000477421 LRWD1Q9UFC0 647 aa12.41□□□□□ -0.42
COL27A1-204ENST00000477421 TTF2Q9UNY4 1162 aaKnown RBP12.41□□□□□ -0.42
COL27A1-204ENST00000477421 FAM205CA6NFA0 338 aa12.4□□□□□ -0.42
COL27A1-204ENST00000477421 PPP6R2O75170 966 aa12.4□□□□□ -0.42
COL27A1-204ENST00000477421 CYLC1P35663 651 aaPredicted RBP12.4□□□□□ -0.42
COL27A1-204ENST00000477421 ETF1P62495 437 aaKnown RBP12.4□□□□□ -0.42
COL27A1-204ENST00000477421 RNF26Q9BY78 433 aaPredicted RBP12.4□□□□□ -0.42
COL27A1-204ENST00000477421 PPP2R3AQ06190 1150 aa12.4□□□□□ -0.42
COL27A1-204ENST00000477421 USH1GQ495M9 461 aa12.4□□□□□ -0.42
COL27A1-204ENST00000477421 TBC1D9BQ66K14 1250 aa12.4□□□□□ -0.42
COL27A1-204ENST00000477421 USP17L2Q6R6M4 530 aa12.4□□□□□ -0.42
COL27A1-204ENST00000477421 FOXP1Q9H334 677 aaPredicted RBP12.4□□□□□ -0.42
COL27A1-204ENST00000477421 KCNF1Q9H3M0 494 aa12.4□□□□□ -0.42
COL27A1-204ENST00000477421 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.4□□□□□ -0.42
COL27A1-204ENST00000477421 PRPF4BQ13523 1007 aaKnown RBP12.4□□□□□ -0.42
COL27A1-204ENST00000477421 NELFCDQ8IXH7 590 aa12.4□□□□□ -0.42
COL27A1-204ENST00000477421 ENAHQ8N8S7 591 aaPredicted RBP12.4□□□□□ -0.42
COL27A1-204ENST00000477421 RBM17Q96I25 401 aaKnown RBP12.4□□□□□ -0.42
COL27A1-204ENST00000477421 MAN1B1Q9UKM7 699 aa12.4□□□□□ -0.42
COL27A1-204ENST00000477421 TMEM232C9JQI7 657 aa12.39□□□□□ -0.43
COL27A1-204ENST00000477421 RNASE9P60153 205 aaKnown RBP12.39□□□□□ -0.43
COL27A1-204ENST00000477421 KIF5AQ12840 1032 aa12.39□□□□□ -0.43
COL27A1-204ENST00000477421 ODF2Q5BJF6 829 aa12.39□□□□□ -0.43
COL27A1-204ENST00000477421 SV2BQ7L1I2 683 aa12.39□□□□□ -0.43
COL27A1-204ENST00000477421 CABP7Q86V35 215 aa12.39□□□□□ -0.43
COL27A1-204ENST00000477421 REXO1Q8N1G1 1221 aaKnown RBP12.39□□□□□ -0.43
COL27A1-204ENST00000477421 SNX29Q8TEQ0 813 aa12.39□□□□□ -0.43
COL27A1-204ENST00000477421 GDAP1L1Q96MZ0 367 aa12.39□□□□□ -0.43
COL27A1-204ENST00000477421 FAM207AQ9NSI2 230 aaPredicted RBP12.39□□□□□ -0.43
COL27A1-204ENST00000477421 CSF1RP07333 972 aa12.39□□□□□ -0.43
COL27A1-204ENST00000477421 PLCD1P51178 756 aa12.39□□□□□ -0.43
COL27A1-204ENST00000477421 SF3B2Q13435 895 aaKnown RBP12.39□□□□□ -0.43
COL27A1-204ENST00000477421 SHC4Q6S5L8 630 aa12.39□□□□□ -0.43
COL27A1-204ENST00000477421 DPP8Q6V1X1 898 aaPredicted RBP12.39□□□□□ -0.43
COL27A1-204ENST00000477421 USP49Q70CQ1 688 aa12.39□□□□□ -0.43
COL27A1-204ENST00000477421 SPDYE3A6NKU9 549 aa12.39□□□□□ -0.43
COL27A1-204ENST00000477421 CHMP2AO43633 222 aa12.39□□□□□ -0.43
COL27A1-204ENST00000477421 PPP1R12BO60237 982 aaPredicted RBP12.39□□□□□ -0.43
COL27A1-204ENST00000477421 PPARDQ03181 441 aa12.39□□□□□ -0.43
COL27A1-204ENST00000477421 HLTFQ14527 1009 aaKnown RBP eCLIP12.39□□□□□ -0.43
COL27A1-204ENST00000477421 GOLGA1Q92805 767 aa12.39□□□□□ -0.43
COL27A1-204ENST00000477421 ZBTB21Q9ULJ3 1066 aa12.39□□□□□ -0.43
COL27A1-204ENST00000477421 PPP2R2CQ9Y2T4 447 aa12.39□□□□□ -0.43
COL27A1-204ENST00000477421 CPDO75976 1380 aa12.38□□□□□ -0.43
COL27A1-204ENST00000477421 AP5Z1O43299 807 aa12.38□□□□□ -0.43
COL27A1-204ENST00000477421 SLC1A4P43007 532 aa12.38□□□□□ -0.43
COL27A1-204ENST00000477421 SYCP3Q8IZU3 236 aa12.38□□□□□ -0.43
COL27A1-204ENST00000477421 ATP8A2Q9NTI2 1148 aa12.38□□□□□ -0.43
COL27A1-204ENST00000477421 TBCAO75347 108 aaKnown RBP12.38□□□□□ -0.43
COL27A1-204ENST00000477421 USP40Q9NVE5 1235 aa12.38□□□□□ -0.43
COL27A1-204ENST00000477421 KRT86O43790 486 aa12.38□□□□□ -0.43
COL27A1-204ENST00000477421 PPP1R13BQ96KQ4 1090 aa12.38□□□□□ -0.43
COL27A1-204ENST00000477421 GBP3Q9H0R5 595 aa12.38□□□□□ -0.43
COL27A1-204ENST00000477421 PLEKHA4Q9H4M7 779 aa12.38□□□□□ -0.43
COL27A1-204ENST00000477421 EPB41L4AQ9HCS5 686 aaPredicted RBP12.38□□□□□ -0.43
COL27A1-204ENST00000477421 CASP14P31944 242 aa12.37□□□□□ -0.43
COL27A1-204ENST00000477421 MRPL12P52815 198 aaKnown RBP12.37□□□□□ -0.43
COL27A1-204ENST00000477421 IQCEQ6IPM2 695 aa12.37□□□□□ -0.43
COL27A1-204ENST00000477421 BSDC1Q9NW68 430 aaPredicted RBP12.37□□□□□ -0.43
COL27A1-204ENST00000477421 CDHR2Q9BYE9 1310 aa12.37□□□□□ -0.43
COL27A1-204ENST00000477421 PRR29P0C7W0 189 aa12.37□□□□□ -0.43
COL27A1-204ENST00000477421 CASP7P55210 303 aa12.37□□□□□ -0.43
COL27A1-204ENST00000477421 OGFOD1Q8N543 542 aa12.37□□□□□ -0.43
COL27A1-204ENST00000477421 FAM84BQ96KN1 310 aaPredicted RBP12.37□□□□□ -0.43
COL27A1-204ENST00000477421 ALDH8A1Q9H2A2 487 aaPredicted RBP12.37□□□□□ -0.43
COL27A1-204ENST00000477421 SLC39A2Q9NP94 309 aa12.37□□□□□ -0.43
COL27A1-204ENST00000477421 NLRC4Q9NPP4 1024 aa12.37□□□□□ -0.43
COL27A1-204ENST00000477421 PARP3Q9Y6F1 533 aa12.37□□□□□ -0.43
COL27A1-204ENST00000477421 SLC16A2P36021 539 aa12.37□□□□□ -0.43
COL27A1-204ENST00000477421 ITPK1Q13572 414 aa12.37□□□□□ -0.43
COL27A1-204ENST00000477421 HERC4Q5GLZ8 1057 aaPredicted RBP12.37□□□□□ -0.43
COL27A1-204ENST00000477421 DCAF17Q5H9S7 520 aaPredicted RBP12.37□□□□□ -0.43
COL27A1-204ENST00000477421 IGDCC4Q8TDY8 1250 aa12.37□□□□□ -0.43
COL27A1-204ENST00000477421 ALS2CR12Q96Q35 445 aa12.37□□□□□ -0.43
COL27A1-204ENST00000477421 HPS5Q9UPZ3 1129 aa12.37□□□□□ -0.43
COL27A1-204ENST00000477421 SSR1P43307 286 aaKnown RBP12.37□□□□□ -0.43
COL27A1-204ENST00000477421 CALCRLQ16602 461 aa12.37□□□□□ -0.43
COL27A1-204ENST00000477421 MARCH10Q8NA82 808 aaPredicted RBP12.37□□□□□ -0.43
COL27A1-204ENST00000477421 BICDL2A1A5D9 508 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 83.4 ms