RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 OSBPL5Q9H0X9 879 aaPredicted RBP6.12□□□□□ -1.43
USP4-209ENST00000475873 XPNPEP3Q9NQH7 507 aa6.12□□□□□ -1.43
USP4-209ENST00000475873 EMILIN3Q9NT22 766 aa6.12□□□□□ -1.43
USP4-209ENST00000475873 CHMP3Q9Y3E7 222 aa6.12□□□□□ -1.43
USP4-209ENST00000475873 SETXQ7Z333 2677 aaKnown RBP6.12□□□□□ -1.43
USP4-209ENST00000475873 USP17L5A8MUK1 530 aa6.11□□□□□ -1.43
USP4-209ENST00000475873 KCNA5P22460 613 aa6.11□□□□□ -1.43
USP4-209ENST00000475873 ADORA2AP29274 412 aa6.11□□□□□ -1.43
USP4-209ENST00000475873 IRS1P35568 1242 aa6.11□□□□□ -1.43
USP4-209ENST00000475873 ACLYP53396 1101 aa6.11□□□□□ -1.43
USP4-209ENST00000475873 RHBDL3P58872 404 aa6.11□□□□□ -1.43
USP4-209ENST00000475873 LMOD3Q0VAK6 560 aa6.11□□□□□ -1.43
USP4-209ENST00000475873 NEXNQ0ZGT2 675 aa6.11□□□□□ -1.43
USP4-209ENST00000475873 PICALMQ13492 652 aa6.11□□□□□ -1.43
USP4-209ENST00000475873 COL9A2Q14055 689 aaPredicted RBP6.11□□□□□ -1.43
USP4-209ENST00000475873 KCTD2Q14681 263 aa6.11□□□□□ -1.43
USP4-209ENST00000475873 LRRC24Q50LG9 513 aa6.11□□□□□ -1.43
USP4-209ENST00000475873 WDR78Q5VTH9 848 aa6.11□□□□□ -1.43
USP4-209ENST00000475873 PTCRAQ6ISU1 281 aaPredicted RBP6.11□□□□□ -1.43
USP4-209ENST00000475873 FAM126BQ8IXS8 530 aa6.11□□□□□ -1.43
USP4-209ENST00000475873 ZNF384Q8TF68 577 aa6.11□□□□□ -1.43
USP4-209ENST00000475873 KAZALD1Q96I82 304 aa6.11□□□□□ -1.43
USP4-209ENST00000475873 MFSD14AQ96MC6 490 aa6.11□□□□□ -1.43
USP4-209ENST00000475873 WNT8AQ9H1J5 351 aa6.11□□□□□ -1.43
USP4-209ENST00000475873 DNAJC18Q9H819 358 aa6.11□□□□□ -1.43
USP4-209ENST00000475873 MUTYHQ9UIF7 546 aa6.11□□□□□ -1.43
USP4-209ENST00000475873 RABGAP1Q9Y3P9 1069 aa6.11□□□□□ -1.43
USP4-209ENST00000475873 FAM208BQ5VWN6 2430 aa6.11□□□□□ -1.43
USP4-209ENST00000475873 TET1Q8NFU7 2136 aa6.11□□□□□ -1.43
USP4-209ENST00000475873 ZFYVE26Q68DK2 2539 aa6.1□□□□□ -1.43
USP4-209ENST00000475873 ROBO3Q96MS0 1386 aa6.1□□□□□ -1.43
USP4-209ENST00000475873 SCN5AQ14524 2016 aa6.1□□□□□ -1.43
USP4-209ENST00000475873 PRR23AA6NEV1 266 aa6.1□□□□□ -1.43
USP4-209ENST00000475873 PROB1E7EW31 1015 aa6.1□□□□□ -1.43
USP4-209ENST00000475873 FRAT2O75474 233 aaPredicted RBP6.1□□□□□ -1.43
USP4-209ENST00000475873 CD4P01730 458 aa6.1□□□□□ -1.43
USP4-209ENST00000475873 FGBP02675 491 aa6.1□□□□□ -1.43
USP4-209ENST00000475873 ATP2A2P16615 1042 aaKnown RBP6.1□□□□□ -1.43
USP4-209ENST00000475873 FGFR2P21802 821 aa6.1□□□□□ -1.43
USP4-209ENST00000475873 VCPP55072 806 aaKnown RBP6.1□□□□□ -1.43
USP4-209ENST00000475873 CACNB1Q02641 598 aaPredicted RBP6.1□□□□□ -1.43
USP4-209ENST00000475873 TTLL4Q14679 1199 aa6.1□□□□□ -1.43
USP4-209ENST00000475873 VPS37DQ86XT2 251 aa6.1□□□□□ -1.43
USP4-209ENST00000475873 CCAR1Q8IX12 1150 aaKnown RBP6.1□□□□□ -1.43
USP4-209ENST00000475873 CCDC146Q8IYE0 955 aa6.1□□□□□ -1.43
USP4-209ENST00000475873 TMEM199Q8N511 208 aa6.1□□□□□ -1.43
USP4-209ENST00000475873 KLHDC9Q8NEP7 349 aa6.1□□□□□ -1.43
USP4-209ENST00000475873 GDPD5Q8WTR4 605 aa6.1□□□□□ -1.43
USP4-209ENST00000475873 XPO5Q9HAV4 1204 aaKnown RBP eCLIP6.1□□□□□ -1.43
USP4-209ENST00000475873 STARD7Q9NQZ5 370 aa6.1□□□□□ -1.43
USP4-209ENST00000475873 ZNFX1Q9P2E3 1918 aaKnown RBP6.09□□□□□ -1.43
USP4-209ENST00000475873 SYNRGQ9UMZ2 1314 aa6.09□□□□□ -1.43
USP4-209ENST00000475873 LCHNA4D1U4 455 aa6.09□□□□□ -1.43
USP4-209ENST00000475873 SPDYE16A6NNV3 312 aaPredicted RBP6.09□□□□□ -1.43
USP4-209ENST00000475873 H3BQ06 376 aaPredicted RBP6.09□□□□□ -1.43
USP4-209ENST00000475873 APBB1O00213 710 aa6.09□□□□□ -1.43
USP4-209ENST00000475873 ADCY6O43306 1168 aa6.09□□□□□ -1.43
USP4-209ENST00000475873 ZNF865P0CJ78 1059 aaPredicted RBP6.09□□□□□ -1.43
USP4-209ENST00000475873 CCL23P55773 120 aa6.09□□□□□ -1.43
USP4-209ENST00000475873 CCDC57Q2TAC2 916 aa6.09□□□□□ -1.43
USP4-209ENST00000475873 NCBP3Q53F19 620 aaKnown RBP6.09□□□□□ -1.43
USP4-209ENST00000475873 HERC4Q5GLZ8 1057 aaPredicted RBP6.09□□□□□ -1.43
USP4-209ENST00000475873 TMEM67Q5HYA8 995 aa6.09□□□□□ -1.43
USP4-209ENST00000475873 CCDC174Q6PII3 467 aa6.09□□□□□ -1.43
USP4-209ENST00000475873 BMP8AQ7Z5Y6 402 aa6.09□□□□□ -1.43
USP4-209ENST00000475873 LINS1Q8NG48 757 aa6.09□□□□□ -1.43
USP4-209ENST00000475873 NEK9Q8TD19 979 aa6.09□□□□□ -1.43
USP4-209ENST00000475873 MAML3Q96JK9 1138 aa6.09□□□□□ -1.43
USP4-209ENST00000475873 MOV10L1Q9BXT6 1211 aaKnown RBP6.09□□□□□ -1.43
USP4-209ENST00000475873 TBC1D2Q9BYX2 928 aa6.09□□□□□ -1.43
USP4-209ENST00000475873 TMOD4Q9NZQ9 345 aa6.09□□□□□ -1.43
USP4-209ENST00000475873 TRPC6Q9Y210 931 aa6.09□□□□□ -1.43
USP4-209ENST00000475873 SLC4A7Q9Y6M7 1214 aa6.09□□□□□ -1.43
USP4-209ENST00000475873 FRYLO94915 3013 aa6.09□□□□□ -1.44
USP4-209ENST00000475873 H0Y858 1186 aa6.08□□□□□ -1.44
USP4-209ENST00000475873 GLRX3O76003 335 aaKnown RBP6.08□□□□□ -1.44
USP4-209ENST00000475873 PDE8BO95263 885 aa6.08□□□□□ -1.44
USP4-209ENST00000475873 RARBP10826 455 aa6.08□□□□□ -1.44
USP4-209ENST00000475873 HOXB3P14651 431 aaPredicted RBP6.08□□□□□ -1.44
USP4-209ENST00000475873 KCNA10Q16322 511 aa6.08□□□□□ -1.44
USP4-209ENST00000475873 CAVIN4Q5BKX8 364 aa6.08□□□□□ -1.44
USP4-209ENST00000475873 TAF7LQ5H9L4 462 aa6.08□□□□□ -1.44
USP4-209ENST00000475873 CCDC30Q5VVM6 783 aa6.08□□□□□ -1.44
USP4-209ENST00000475873 LBX2Q6XYB7 198 aa6.08□□□□□ -1.44
USP4-209ENST00000475873 RNF180Q86T96 592 aa6.08□□□□□ -1.44
USP4-209ENST00000475873 DPP9Q86TI2 863 aa6.08□□□□□ -1.44
USP4-209ENST00000475873 WDR66Q8TBY9 1149 aa6.08□□□□□ -1.44
USP4-209ENST00000475873 GTF3C2Q8WUA4 911 aaPredicted RBP6.08□□□□□ -1.44
USP4-209ENST00000475873 DNAAF4Q8WXU2 420 aa6.08□□□□□ -1.44
USP4-209ENST00000475873 RMDN1Q96DB5 314 aa6.08□□□□□ -1.44
USP4-209ENST00000475873 TSEN34Q9BSV6 310 aaKnown RBP6.08□□□□□ -1.44
USP4-209ENST00000475873 FSD1Q9BTV5 496 aa6.08□□□□□ -1.44
USP4-209ENST00000475873 NOC4LQ9BVI4 516 aaKnown RBP6.08□□□□□ -1.44
USP4-209ENST00000475873 CWC22Q9HCG8 908 aaKnown RBP6.08□□□□□ -1.44
USP4-209ENST00000475873 TLR9Q9NR96 1032 aa6.08□□□□□ -1.44
USP4-209ENST00000475873 IVNS1ABPQ9Y6Y0 642 aa6.08□□□□□ -1.44
USP4-209ENST00000475873 ASPMQ8IZT6 3477 aa6.07□□□□□ -1.44
USP4-209ENST00000475873 MROH5Q6ZUA9 1318 aa6.07□□□□□ -1.44
USP4-209ENST00000475873 KIF16BQ96L93 1317 aa6.07□□□□□ -1.44
USP4-209ENST00000475873 OTOGLQ3ZCN5 2332 aa6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms