RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 GIMAP6Q6P9H5 292 aa22.29■■□□□ 1.16
COL7A1-209ENST00000474432 SOCS4Q8WXH5 440 aa22.29■■□□□ 1.16
COL7A1-209ENST00000474432 SEC62Q99442 399 aaKnown RBP22.29■■□□□ 1.16
COL7A1-209ENST00000474432 ROBO3Q96MS0 1386 aa22.28■■□□□ 1.16
COL7A1-209ENST00000474432 GLRX3O76003 335 aaKnown RBP22.28■■□□□ 1.16
COL7A1-209ENST00000474432 HDAC1Q13547 482 aaPredicted RBP22.28■■□□□ 1.16
COL7A1-209ENST00000474432 COG2Q14746 738 aa22.28■■□□□ 1.16
COL7A1-209ENST00000474432 CCL14Q16627 93 aa22.28■■□□□ 1.16
COL7A1-209ENST00000474432 DDRGK1Q96HY6 314 aa22.28■■□□□ 1.16
COL7A1-209ENST00000474432 RPTORQ8N122 1335 aa22.28■■□□□ 1.16
COL7A1-209ENST00000474432 FARP2O94887 1054 aaPredicted RBP22.27■■□□□ 1.16
COL7A1-209ENST00000474432 EEF2P13639 858 aaKnown RBP22.27■■□□□ 1.16
COL7A1-209ENST00000474432 MX1P20591 662 aa22.27■■□□□ 1.16
COL7A1-209ENST00000474432 RASA1P20936 1047 aa22.27■■□□□ 1.16
COL7A1-209ENST00000474432 AMOTL1Q8IY63 956 aa22.27■■□□□ 1.16
COL7A1-209ENST00000474432 VCPKMTQ9H867 229 aa22.27■■□□□ 1.16
COL7A1-209ENST00000474432 ALPK3Q96L96 1907 aa22.27■■□□□ 1.16
COL7A1-209ENST00000474432 H0YGN5 161 aa22.26■■□□□ 1.15
COL7A1-209ENST00000474432 ERC2O15083 957 aa22.26■■□□□ 1.15
COL7A1-209ENST00000474432 TFRCP02786 760 aaKnown RBP22.26■■□□□ 1.15
COL7A1-209ENST00000474432 PTPREP23469 700 aa22.26■■□□□ 1.15
COL7A1-209ENST00000474432 MNX1P50219 401 aaPredicted RBP22.26■■□□□ 1.15
COL7A1-209ENST00000474432 SPICE1Q8N0Z3 855 aa22.26■■□□□ 1.15
COL7A1-209ENST00000474432 LPAR1Q92633 364 aa22.26■■□□□ 1.15
COL7A1-209ENST00000474432 ARHGEF10LQ9HCE6 1279 aa22.26■■□□□ 1.15
COL7A1-209ENST00000474432 HOXC10Q9NYD6 342 aa22.26■■□□□ 1.15
COL7A1-209ENST00000474432 IGHA2P01877 340 aa22.25■■□□□ 1.15
COL7A1-209ENST00000474432 CAPN2P17655 700 aa22.25■■□□□ 1.15
COL7A1-209ENST00000474432 DSG3P32926 999 aa22.25■■□□□ 1.15
COL7A1-209ENST00000474432 RGS2P41220 211 aa22.25■■□□□ 1.15
COL7A1-209ENST00000474432 CCNA1P78396 465 aa22.25■■□□□ 1.15
COL7A1-209ENST00000474432 MAP2K5Q13163 448 aa22.25■■□□□ 1.15
COL7A1-209ENST00000474432 ZMYM1Q5SVZ6 1142 aa22.25■■□□□ 1.15
COL7A1-209ENST00000474432 ANKRD45Q5TZF3 282 aa22.25■■□□□ 1.15
COL7A1-209ENST00000474432 MOV10L1Q9BXT6 1211 aaKnown RBP22.25■■□□□ 1.15
COL7A1-209ENST00000474432 TANGO6Q9C0B7 1094 aa22.25■■□□□ 1.15
COL7A1-209ENST00000474432 KANSL2Q9H9L4 492 aa22.25■■□□□ 1.15
COL7A1-209ENST00000474432 HMX1Q9NP08 348 aaPredicted RBP22.25■■□□□ 1.15
COL7A1-209ENST00000474432 FLRT1Q9NZU1 646 aa22.25■■□□□ 1.15
COL7A1-209ENST00000474432 STAP2Q9UGK3 403 aa22.25■■□□□ 1.15
COL7A1-209ENST00000474432 MINDY4BA8MYZ0 360 aa22.24■■□□□ 1.15
COL7A1-209ENST00000474432 PATL2C9JE40 543 aaKnown RBP22.24■■□□□ 1.15
COL7A1-209ENST00000474432 FOXP2O15409 715 aa22.24■■□□□ 1.15
COL7A1-209ENST00000474432 PRKAR2AP13861 404 aaKnown RBP22.24■■□□□ 1.15
COL7A1-209ENST00000474432 CACNB2Q08289 660 aaPredicted RBP22.24■■□□□ 1.15
COL7A1-209ENST00000474432 CCAR1Q8IX12 1150 aaKnown RBP22.24■■□□□ 1.15
COL7A1-209ENST00000474432 STK11IPQ8N1F8 1099 aa22.24■■□□□ 1.15
COL7A1-209ENST00000474432 DIS3LQ8TF46 1054 aaKnown RBP22.24■■□□□ 1.15
COL7A1-209ENST00000474432 APBA2Q99767 749 aa22.24■■□□□ 1.15
COL7A1-209ENST00000474432 COL11A1P12107 1806 aaPredicted RBP22.24■■□□□ 1.15
COL7A1-209ENST00000474432 ZNF236Q9UL36 1845 aa22.23■■□□□ 1.15
COL7A1-209ENST00000474432 SLC15A5A6NIM6 579 aa22.23■■□□□ 1.15
COL7A1-209ENST00000474432 HOXC6P09630 235 aa22.23■■□□□ 1.15
COL7A1-209ENST00000474432 GNAT2P19087 354 aa22.23■■□□□ 1.15
COL7A1-209ENST00000474432 GRB14Q14449 540 aa22.23■■□□□ 1.15
COL7A1-209ENST00000474432 IFNL3Q8IZI9 196 aa22.23■■□□□ 1.15
COL7A1-209ENST00000474432 GCC1Q96CN9 775 aa22.23■■□□□ 1.15
COL7A1-209ENST00000474432 ATG4CQ96DT6 458 aa22.23■■□□□ 1.15
COL7A1-209ENST00000474432 SH2D4AQ9H788 454 aa22.23■■□□□ 1.15
COL7A1-209ENST00000474432 ADAMTS5Q9UNA0 930 aa22.23■■□□□ 1.15
COL7A1-209ENST00000474432 IGKV6D-41A0A0C4DH26 115 aa22.22■■□□□ 1.15
COL7A1-209ENST00000474432 WDR46O15213 610 aaKnown RBP22.22■■□□□ 1.15
COL7A1-209ENST00000474432 ZKSCAN1P17029 563 aaPredicted RBP22.22■■□□□ 1.15
COL7A1-209ENST00000474432 HABP4Q5JVS0 413 aaKnown RBP22.22■■□□□ 1.15
COL7A1-209ENST00000474432 TRMT44Q8IYL2 757 aaKnown RBP22.22■■□□□ 1.15
COL7A1-209ENST00000474432 NPLOC4Q8TAT6 608 aa22.22■■□□□ 1.15
COL7A1-209ENST00000474432 PAWRQ96IZ0 340 aaKnown RBP22.22■■□□□ 1.15
COL7A1-209ENST00000474432 FSD1Q9BTV5 496 aa22.22■■□□□ 1.15
COL7A1-209ENST00000474432 SPATC1LQ9H0A9 340 aa22.22■■□□□ 1.15
COL7A1-209ENST00000474432 FLOT1O75955 427 aa22.21■■□□□ 1.15
COL7A1-209ENST00000474432 CCND3P30281 292 aaPredicted RBP22.21■■□□□ 1.15
COL7A1-209ENST00000474432 PDE1AP54750 535 aa22.21■■□□□ 1.15
COL7A1-209ENST00000474432 DPF3Q92784 378 aa22.21■■□□□ 1.15
COL7A1-209ENST00000474432 HTATIP2Q9BUP3 242 aa22.21■■□□□ 1.15
COL7A1-209ENST00000474432 FBXO28Q9NVF7 368 aa22.21■■□□□ 1.15
COL7A1-209ENST00000474432 OGDHLQ9ULD0 1010 aa22.21■■□□□ 1.15
COL7A1-209ENST00000474432 FRMPD3Q5JV73 1810 aa22.2■■□□□ 1.14
COL7A1-209ENST00000474432 TDO2P48775 406 aa22.2■■□□□ 1.14
COL7A1-209ENST00000474432 ATP2B2Q01814 1243 aa22.2■■□□□ 1.14
COL7A1-209ENST00000474432 LRRFIP1Q32MZ4 808 aaKnown RBP22.2■■□□□ 1.14
COL7A1-209ENST00000474432 WDR78Q5VTH9 848 aa22.2■■□□□ 1.14
COL7A1-209ENST00000474432 LHX8Q68G74 356 aa22.2■■□□□ 1.14
COL7A1-209ENST00000474432 MB21D1Q8N884 522 aa22.2■■□□□ 1.14
COL7A1-209ENST00000474432 ANKLE1Q8NAG6 615 aa22.2■■□□□ 1.14
COL7A1-209ENST00000474432 SHCBP1Q8NEM2 672 aa22.2■■□□□ 1.14
COL7A1-209ENST00000474432 NYAP2Q9P242 653 aa22.2■■□□□ 1.14
COL7A1-209ENST00000474432 COLQQ9Y215 455 aaPredicted RBP22.2■■□□□ 1.14
COL7A1-209ENST00000474432 ZNFX1Q9P2E3 1918 aaKnown RBP22.19■■□□□ 1.14
COL7A1-209ENST00000474432 MYH4Q9Y623 1939 aa22.19■■□□□ 1.14
COL7A1-209ENST00000474432 PRDM1O75626 825 aa22.19■■□□□ 1.14
COL7A1-209ENST00000474432 APPP05067 770 aa22.19■■□□□ 1.14
COL7A1-209ENST00000474432 ERCC3P19447 782 aa22.19■■□□□ 1.14
COL7A1-209ENST00000474432 TMEM132BQ14DG7 1078 aa22.19■■□□□ 1.14
COL7A1-209ENST00000474432 CCDC129Q6ZRS4 1044 aa22.19■■□□□ 1.14
COL7A1-209ENST00000474432 SMC5Q8IY18 1101 aa22.19■■□□□ 1.14
COL7A1-209ENST00000474432 MKNK2Q9HBH9 465 aa22.19■■□□□ 1.14
COL7A1-209ENST00000474432 TRIOBPQ9H2D6 2365 aa22.18■■□□□ 1.14
COL7A1-209ENST00000474432 FAM83BQ5T0W9 1011 aa22.18■■□□□ 1.14
COL7A1-209ENST00000474432 REPS2Q8NFH8 660 aa22.18■■□□□ 1.14
COL7A1-209ENST00000474432 CWC22Q9HCG8 908 aaKnown RBP22.18■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms