RNA–Protein interactions for RNA: ENST00000474048.1

PRPF38A-202, Transcript of pre-mRNA processing factor 38A, humanhuman

TSL 1 (best)

Gene PRPF38A, Length 1,059 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF38A-202ENST00000474048 NID2Q14112 1375 aa11.93□□□□□ -0.5
PRPF38A-202ENST00000474048 WDR33Q9C0J8 1336 aaKnown RBP11.93□□□□□ -0.5
PRPF38A-202ENST00000474048 POLR2AP24928 1970 aaKnown RBP11.93□□□□□ -0.5
PRPF38A-202ENST00000474048 VPS37CA5D8V6 355 aaPredicted RBP11.93□□□□□ -0.5
PRPF38A-202ENST00000474048 ADM5C9JUS6 153 aa11.93□□□□□ -0.5
PRPF38A-202ENST00000474048 EEF2P13639 858 aaKnown RBP11.93□□□□□ -0.5
PRPF38A-202ENST00000474048 GNL2Q13823 731 aaKnown RBP11.93□□□□□ -0.5
PRPF38A-202ENST00000474048 PRKG1Q13976 671 aa11.93□□□□□ -0.5
PRPF38A-202ENST00000474048 ASPRV1Q53RT3 343 aa11.93□□□□□ -0.5
PRPF38A-202ENST00000474048 LARP1BQ659C4 914 aaKnown RBP11.93□□□□□ -0.5
PRPF38A-202ENST00000474048 ARMC9Q7Z3E5 817 aa11.93□□□□□ -0.5
PRPF38A-202ENST00000474048 LDHDQ86WU2 507 aa11.93□□□□□ -0.5
PRPF38A-202ENST00000474048 TEPSINQ96N21 525 aa11.93□□□□□ -0.5
PRPF38A-202ENST00000474048 SLC26A6Q9BXS9 759 aa11.93□□□□□ -0.5
PRPF38A-202ENST00000474048 SENP2Q9HC62 589 aa11.93□□□□□ -0.5
PRPF38A-202ENST00000474048 ORC3Q9UBD5 711 aaPredicted RBP11.93□□□□□ -0.5
PRPF38A-202ENST00000474048 SEC63Q9UGP8 760 aaKnown RBP11.93□□□□□ -0.5
PRPF38A-202ENST00000474048 SYNPO2Q9UMS6 1093 aa11.93□□□□□ -0.5
PRPF38A-202ENST00000474048 MYH6P13533 1939 aa11.93□□□□□ -0.5
PRPF38A-202ENST00000474048 USP17L5A8MUK1 530 aa11.92□□□□□ -0.5
PRPF38A-202ENST00000474048 SLC1A4P43007 532 aa11.92□□□□□ -0.5
PRPF38A-202ENST00000474048 GRM4Q14833 912 aa11.92□□□□□ -0.5
PRPF38A-202ENST00000474048 GPATCH4Q5T3I0 446 aaKnown RBP11.92□□□□□ -0.5
PRPF38A-202ENST00000474048 PRAMEF18Q5VWM3 479 aa11.92□□□□□ -0.5
PRPF38A-202ENST00000474048 RCSD1Q6JBY9 416 aa11.92□□□□□ -0.5
PRPF38A-202ENST00000474048 SCYL3Q8IZE3 742 aa11.92□□□□□ -0.5
PRPF38A-202ENST00000474048 NSUN7Q8NE18 718 aaKnown RBP11.92□□□□□ -0.5
PRPF38A-202ENST00000474048 DCAF4Q8WV16 495 aa11.92□□□□□ -0.5
PRPF38A-202ENST00000474048 CDCA5Q96FF9 252 aa11.92□□□□□ -0.5
PRPF38A-202ENST00000474048 ZNF408Q9H9D4 720 aa11.92□□□□□ -0.5
PRPF38A-202ENST00000474048 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.92□□□□□ -0.5
PRPF38A-202ENST00000474048 HPS5Q9UPZ3 1129 aa11.92□□□□□ -0.5
PRPF38A-202ENST00000474048 ATP6V1DQ9Y5K8 247 aa11.92□□□□□ -0.5
PRPF38A-202ENST00000474048 STK36Q9NRP7 1315 aa11.91□□□□□ -0.5
PRPF38A-202ENST00000474048 IGKV6D-41A0A0C4DH26 115 aa11.91□□□□□ -0.5
PRPF38A-202ENST00000474048 DEXIO95424 95 aa11.91□□□□□ -0.5
PRPF38A-202ENST00000474048 IFNAR1P17181 557 aa11.91□□□□□ -0.5
PRPF38A-202ENST00000474048 ADD1P35611 737 aaKnown RBP11.91□□□□□ -0.5
PRPF38A-202ENST00000474048 MAP3K10Q02779 954 aa11.91□□□□□ -0.5
PRPF38A-202ENST00000474048 TROAPQ12815 778 aa11.91□□□□□ -0.5
PRPF38A-202ENST00000474048 SLFN13Q68D06 897 aa11.91□□□□□ -0.5
PRPF38A-202ENST00000474048 CLEC10AQ8IUN9 316 aa11.91□□□□□ -0.5
PRPF38A-202ENST00000474048 CDAN1Q8IWY9 1227 aa11.91□□□□□ -0.5
PRPF38A-202ENST00000474048 CCDC82Q8N4S0 544 aa11.91□□□□□ -0.5
PRPF38A-202ENST00000474048 NKX2-3Q8TAU0 364 aa11.91□□□□□ -0.5
PRPF38A-202ENST00000474048 C8orf76Q96K31 380 aa11.91□□□□□ -0.5
PRPF38A-202ENST00000474048 RNF26Q9BY78 433 aaPredicted RBP11.91□□□□□ -0.5
PRPF38A-202ENST00000474048 BRMS1Q9HCU9 246 aa11.91□□□□□ -0.5
PRPF38A-202ENST00000474048 KLRF2D3W0D1 207 aa11.9□□□□□ -0.5
PRPF38A-202ENST00000474048 STX6O43752 255 aa11.9□□□□□ -0.5
PRPF38A-202ENST00000474048 JAK2O60674 1132 aa11.9□□□□□ -0.5
PRPF38A-202ENST00000474048 FMNL1O95466 1100 aaPredicted RBP11.9□□□□□ -0.5
PRPF38A-202ENST00000474048 SLURP2P0DP57 97 aa11.9□□□□□ -0.5
PRPF38A-202ENST00000474048 CDC27P30260 824 aa11.9□□□□□ -0.5
PRPF38A-202ENST00000474048 USP14P54578 494 aa11.9□□□□□ -0.5
PRPF38A-202ENST00000474048 SAFBQ15424 915 aaKnown RBP eCLIP11.9□□□□□ -0.5
PRPF38A-202ENST00000474048 ZYXQ15942 572 aaKnown RBP11.9□□□□□ -0.5
PRPF38A-202ENST00000474048 TMTC3Q6ZXV5 915 aa11.9□□□□□ -0.5
PRPF38A-202ENST00000474048 GMCL1P1Q8NEA9 526 aa11.9□□□□□ -0.5
PRPF38A-202ENST00000474048 PHKBQ93100 1093 aa11.9□□□□□ -0.5
PRPF38A-202ENST00000474048 RRP36Q96EU6 259 aaKnown RBP11.9□□□□□ -0.5
PRPF38A-202ENST00000474048 GBP4Q96PP9 640 aa11.9□□□□□ -0.5
PRPF38A-202ENST00000474048 ALG1Q9BT22 464 aa11.9□□□□□ -0.5
PRPF38A-202ENST00000474048 GLIS2Q9BZE0 524 aaPredicted RBP11.9□□□□□ -0.5
PRPF38A-202ENST00000474048 GPBP1L1Q9HC44 474 aaPredicted RBP11.9□□□□□ -0.5
PRPF38A-202ENST00000474048 CTDP1Q9Y5B0 961 aaPredicted RBP11.9□□□□□ -0.5
PRPF38A-202ENST00000474048 FRMPD2Q68DX3 1309 aaPredicted RBP11.89□□□□□ -0.51
PRPF38A-202ENST00000474048 GOLGA6L22H0YM25 854 aa11.89□□□□□ -0.51
PRPF38A-202ENST00000474048 PDHBP11177 359 aa11.89□□□□□ -0.51
PRPF38A-202ENST00000474048 INPP5BP32019 993 aa11.89□□□□□ -0.51
PRPF38A-202ENST00000474048 FOSBP53539 338 aa11.89□□□□□ -0.51
PRPF38A-202ENST00000474048 MAP3K9P80192 1104 aa11.89□□□□□ -0.51
PRPF38A-202ENST00000474048 MAP1SQ66K74 1059 aaPredicted RBP11.89□□□□□ -0.51
PRPF38A-202ENST00000474048 MCTP1Q6DN14 999 aa11.89□□□□□ -0.51
PRPF38A-202ENST00000474048 ANKRD13AQ8IZ07 590 aa11.89□□□□□ -0.51
PRPF38A-202ENST00000474048 SMARCC2Q8TAQ2 1214 aa11.89□□□□□ -0.51
PRPF38A-202ENST00000474048 CCDC12Q8WUD4 166 aaPredicted RBP11.89□□□□□ -0.51
PRPF38A-202ENST00000474048 MKL1Q969V6 931 aa11.89□□□□□ -0.51
PRPF38A-202ENST00000474048 KLRG1Q96E93 195 aa11.89□□□□□ -0.51
PRPF38A-202ENST00000474048 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.89□□□□□ -0.51
PRPF38A-202ENST00000474048 GPCPD1Q9NPB8 672 aa11.89□□□□□ -0.51
PRPF38A-202ENST00000474048 TMOD4Q9NZQ9 345 aa11.89□□□□□ -0.51
PRPF38A-202ENST00000474048 PGAP2Q9UHJ9 254 aa11.89□□□□□ -0.51
PRPF38A-202ENST00000474048 PHF20L1A8MW92 1017 aa11.88□□□□□ -0.51
PRPF38A-202ENST00000474048 USP17L10C9JJH3 530 aa11.88□□□□□ -0.51
PRPF38A-202ENST00000474048 F5H6K3 240 aa11.88□□□□□ -0.51
PRPF38A-202ENST00000474048 PPFIA3O75145 1194 aa11.88□□□□□ -0.51
PRPF38A-202ENST00000474048 PLEKHA8P1O95397 391 aa11.88□□□□□ -0.51
PRPF38A-202ENST00000474048 GOLGA8HP0CJ92 632 aa11.88□□□□□ -0.51
PRPF38A-202ENST00000474048 BMP3P12645 472 aa11.88□□□□□ -0.51
PRPF38A-202ENST00000474048 SYT1P21579 422 aa11.88□□□□□ -0.51
PRPF38A-202ENST00000474048 NOVP48745 357 aa11.88□□□□□ -0.51
PRPF38A-202ENST00000474048 KLRC3Q07444 240 aa11.88□□□□□ -0.51
PRPF38A-202ENST00000474048 ST3GAL1Q11201 340 aa11.88□□□□□ -0.51
PRPF38A-202ENST00000474048 TRAF1Q13077 416 aa11.88□□□□□ -0.51
PRPF38A-202ENST00000474048 NOL9Q5SY16 702 aaKnown RBP11.88□□□□□ -0.51
PRPF38A-202ENST00000474048 USP17L2Q6R6M4 530 aa11.88□□□□□ -0.51
PRPF38A-202ENST00000474048 C2orf69Q8N8R5 385 aa11.88□□□□□ -0.51
PRPF38A-202ENST00000474048 CCDC148Q8NFR7 591 aa11.88□□□□□ -0.51
PRPF38A-202ENST00000474048 PIBF1Q8WXW3 757 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms