RNA–Protein interactions for RNA: ENST00000474025.1

SNRNP40-204, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 3

Gene SNRNP40, Length 581 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-204ENST00000474025 SENP6Q9GZR1 1112 aaPredicted RBP6.31□□□□□ -1.4
SNRNP40-204ENST00000474025 FLRT1Q9NZU1 646 aa6.31□□□□□ -1.4
SNRNP40-204ENST00000474025 LRP2BPQ9P2M1 347 aa6.31□□□□□ -1.4
SNRNP40-204ENST00000474025 DDX20Q9UHI6 824 aaKnown RBP6.31□□□□□ -1.4
SNRNP40-204ENST00000474025 PALD1Q9ULE6 856 aa6.31□□□□□ -1.4
SNRNP40-204ENST00000474025 NOB1Q9ULX3 412 aaKnown RBP6.31□□□□□ -1.4
SNRNP40-204ENST00000474025 RABGAP1Q9Y3P9 1069 aa6.31□□□□□ -1.4
SNRNP40-204ENST00000474025 ARIH1Q9Y4X5 557 aaPredicted RBP6.31□□□□□ -1.4
SNRNP40-204ENST00000474025 NCOR1O75376 2440 aa6.3□□□□□ -1.4
SNRNP40-204ENST00000474025 CDK5RAP2Q96SN8 1893 aa6.3□□□□□ -1.4
SNRNP40-204ENST00000474025 FOCADQ5VW36 1801 aa6.3□□□□□ -1.4
SNRNP40-204ENST00000474025 SLC15A5A6NIM6 579 aa6.3□□□□□ -1.4
SNRNP40-204ENST00000474025 MSCO60682 206 aa6.3□□□□□ -1.4
SNRNP40-204ENST00000474025 BAG3O95817 575 aa6.3□□□□□ -1.4
SNRNP40-204ENST00000474025 GH2P01242 217 aa6.3□□□□□ -1.4
SNRNP40-204ENST00000474025 GNAI3P08754 354 aa6.3□□□□□ -1.4
SNRNP40-204ENST00000474025 UQCRFS1P1P0C7P4 283 aa6.3□□□□□ -1.4
SNRNP40-204ENST00000474025 PTPREP23469 700 aa6.3□□□□□ -1.4
SNRNP40-204ENST00000474025 RTP1P59025 263 aa6.3□□□□□ -1.4
SNRNP40-204ENST00000474025 CCNA1P78396 465 aa6.3□□□□□ -1.4
SNRNP40-204ENST00000474025 GRB14Q14449 540 aa6.3□□□□□ -1.4
SNRNP40-204ENST00000474025 ARSIQ5FYB1 569 aa6.3□□□□□ -1.4
SNRNP40-204ENST00000474025 NAA16Q6N069 864 aaPredicted RBP6.3□□□□□ -1.4
SNRNP40-204ENST00000474025 LBX2Q6XYB7 198 aa6.3□□□□□ -1.4
SNRNP40-204ENST00000474025 FOXP4Q8IVH2 680 aaPredicted RBP6.3□□□□□ -1.4
SNRNP40-204ENST00000474025 TRMT2AQ8IZ69 625 aaKnown RBP6.3□□□□□ -1.4
SNRNP40-204ENST00000474025 TRPV1Q8NER1 839 aa6.3□□□□□ -1.4
SNRNP40-204ENST00000474025 MAFAQ8NHW3 353 aaPredicted RBP6.3□□□□□ -1.4
SNRNP40-204ENST00000474025 EDC3Q96F86 508 aaKnown RBP6.3□□□□□ -1.4
SNRNP40-204ENST00000474025 CDCA7LQ96GN5 454 aa6.3□□□□□ -1.4
SNRNP40-204ENST00000474025 CDX2Q99626 313 aaPredicted RBP6.3□□□□□ -1.4
SNRNP40-204ENST00000474025 CWC22Q9HCG8 908 aaKnown RBP6.3□□□□□ -1.4
SNRNP40-204ENST00000474025 SAP30BPQ9UHR5 308 aaKnown RBP6.3□□□□□ -1.4
SNRNP40-204ENST00000474025 NDUFB9Q9Y6M9 179 aa6.3□□□□□ -1.4
SNRNP40-204ENST00000474025 PNMA6EA0A0J9YXQ4 647 aa6.29□□□□□ -1.4
SNRNP40-204ENST00000474025 SPDYE16A6NNV3 312 aaPredicted RBP6.29□□□□□ -1.4
SNRNP40-204ENST00000474025 USP17L15C9J2P7 530 aa6.29□□□□□ -1.4
SNRNP40-204ENST00000474025 USP17L13C9JLJ4 530 aa6.29□□□□□ -1.4
SNRNP40-204ENST00000474025 USP17L11C9JVI0 530 aa6.29□□□□□ -1.4
SNRNP40-204ENST00000474025 USP17L18D6R9N7 530 aa6.29□□□□□ -1.4
SNRNP40-204ENST00000474025 USP17L22D6RA61 530 aa6.29□□□□□ -1.4
SNRNP40-204ENST00000474025 USP17L17D6RBQ6 530 aa6.29□□□□□ -1.4
SNRNP40-204ENST00000474025 USP17L19D6RCP7 530 aa6.29□□□□□ -1.4
SNRNP40-204ENST00000474025 USP17L20D6RJB6 530 aa6.29□□□□□ -1.4
SNRNP40-204ENST00000474025 TNFRSF10AO00220 468 aa6.29□□□□□ -1.4
SNRNP40-204ENST00000474025 GLRX3O76003 335 aaKnown RBP6.29□□□□□ -1.4
SNRNP40-204ENST00000474025 CYP2E1P05181 493 aaPredicted RBP6.29□□□□□ -1.4
SNRNP40-204ENST00000474025 HLA-DOAP06340 250 aa6.29□□□□□ -1.4
SNRNP40-204ENST00000474025 CT47B1P0C2W7 299 aaPredicted RBP6.29□□□□□ -1.4
SNRNP40-204ENST00000474025 CYBAP13498 195 aa6.29□□□□□ -1.4
SNRNP40-204ENST00000474025 VCAM1P19320 739 aa6.29□□□□□ -1.4
SNRNP40-204ENST00000474025 CNGA1P29973 690 aa6.29□□□□□ -1.4
SNRNP40-204ENST00000474025 CYP2C19P33261 490 aa6.29□□□□□ -1.4
SNRNP40-204ENST00000474025 USP17L24Q0WX57 530 aa6.29□□□□□ -1.4
SNRNP40-204ENST00000474025 SNX17Q15036 470 aa6.29□□□□□ -1.4
SNRNP40-204ENST00000474025 SHHQ15465 462 aa6.29□□□□□ -1.4
SNRNP40-204ENST00000474025 ZYXQ15942 572 aaKnown RBP6.29□□□□□ -1.4
SNRNP40-204ENST00000474025 TPRNQ4KMQ1 711 aa6.29□□□□□ -1.4
SNRNP40-204ENST00000474025 C9orf50Q5SZB4 431 aa6.29□□□□□ -1.4
SNRNP40-204ENST00000474025 WDR78Q5VTH9 848 aa6.29□□□□□ -1.4
SNRNP40-204ENST00000474025 CATSPERGQ6ZRH7 1159 aa6.29□□□□□ -1.4
SNRNP40-204ENST00000474025 NPLOC4Q8TAT6 608 aa6.29□□□□□ -1.4
SNRNP40-204ENST00000474025 FEZ1Q99689 392 aa6.29□□□□□ -1.4
SNRNP40-204ENST00000474025 TRIM34Q9BYJ4 488 aa6.29□□□□□ -1.4
SNRNP40-204ENST00000474025 TTYH1Q9H313 450 aaPredicted RBP6.29□□□□□ -1.4
SNRNP40-204ENST00000474025 SEMA6BQ9H3T3 888 aa6.29□□□□□ -1.4
SNRNP40-204ENST00000474025 SNRKQ9NRH2 765 aa6.29□□□□□ -1.4
SNRNP40-204ENST00000474025 BTBD7Q9P203 1132 aa6.29□□□□□ -1.4
SNRNP40-204ENST00000474025 PRKAG2Q9UGJ0 569 aa6.29□□□□□ -1.4
SNRNP40-204ENST00000474025 ATP11BQ9Y2G3 1177 aa6.29□□□□□ -1.4
SNRNP40-204ENST00000474025 IVNS1ABPQ9Y6Y0 642 aa6.29□□□□□ -1.4
SNRNP40-204ENST00000474025 ZNF236Q9UL36 1845 aa6.29□□□□□ -1.4
SNRNP40-204ENST00000474025 RLFQ13129 1914 aa6.29□□□□□ -1.4
SNRNP40-204ENST00000474025 WDFY4Q6ZS81 3184 aa6.28□□□□□ -1.4
SNRNP40-204ENST00000474025 PPP1R37O75864 691 aa6.28□□□□□ -1.4
SNRNP40-204ENST00000474025 GNAI2P04899 355 aa6.28□□□□□ -1.4
SNRNP40-204ENST00000474025 RARSP54136 660 aaKnown RBP6.28□□□□□ -1.4
SNRNP40-204ENST00000474025 USP14P54578 494 aa6.28□□□□□ -1.4
SNRNP40-204ENST00000474025 DYNLL1P63167 89 aaKnown RBP6.28□□□□□ -1.4
SNRNP40-204ENST00000474025 SMAD3P84022 425 aaKnown RBP6.28□□□□□ -1.4
SNRNP40-204ENST00000474025 ATP2B2Q01814 1243 aa6.28□□□□□ -1.4
SNRNP40-204ENST00000474025 RAB3GAP1Q15042 981 aa6.28□□□□□ -1.4
SNRNP40-204ENST00000474025 TJAP1Q5JTD0 557 aa6.28□□□□□ -1.4
SNRNP40-204ENST00000474025 TTC39AQ5SRH9 613 aa6.28□□□□□ -1.4
SNRNP40-204ENST00000474025 GJC2Q5T442 439 aaPredicted RBP6.28□□□□□ -1.4
SNRNP40-204ENST00000474025 OLFML2BQ68BL8 750 aa6.28□□□□□ -1.4
SNRNP40-204ENST00000474025 TATDN1Q6P1N9 297 aa6.28□□□□□ -1.4
SNRNP40-204ENST00000474025 ATF7IPQ6VMQ6 1270 aa6.28□□□□□ -1.4
SNRNP40-204ENST00000474025 SLC39A5Q6ZMH5 540 aa6.28□□□□□ -1.4
SNRNP40-204ENST00000474025 TMC2Q8TDI7 906 aa6.28□□□□□ -1.4
SNRNP40-204ENST00000474025 ACER1Q8TDN7 264 aa6.28□□□□□ -1.4
SNRNP40-204ENST00000474025 MYLIPQ8WY64 445 aa6.28□□□□□ -1.4
SNRNP40-204ENST00000474025 BADQ92934 168 aa6.28□□□□□ -1.4
SNRNP40-204ENST00000474025 DBNDD2Q9BQY9 259 aa6.28□□□□□ -1.4
SNRNP40-204ENST00000474025 KIAA1683Q9H0B3 1180 aa6.28□□□□□ -1.4
SNRNP40-204ENST00000474025 EHD4Q9H223 541 aa6.28□□□□□ -1.4
SNRNP40-204ENST00000474025 GPR108Q9NPR9 543 aa6.28□□□□□ -1.4
SNRNP40-204ENST00000474025 PIH1D3Q9NQM4 214 aaKnown RBP6.28□□□□□ -1.4
SNRNP40-204ENST00000474025 PDLIM7Q9NR12 457 aa6.28□□□□□ -1.4
SNRNP40-204ENST00000474025 SERPINB13Q9UIV8 391 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms