RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 TBC1D10BQ4KMP7 808 aaPredicted RBP14.86□□□□□ -0.03
VPS13D-205ENST00000473099 MCTP1Q6DN14 999 aa14.86□□□□□ -0.03
VPS13D-205ENST00000473099 DPY19L2Q6NUT2 758 aa14.86□□□□□ -0.03
VPS13D-205ENST00000473099 BRAPQ7Z569 592 aa14.86□□□□□ -0.03
VPS13D-205ENST00000473099 MKL1Q969V6 931 aa14.86□□□□□ -0.03
VPS13D-205ENST00000473099 ANP32EQ9BTT0 268 aa14.86□□□□□ -0.03
VPS13D-205ENST00000473099 GPBP1L1Q9HC44 474 aaPredicted RBP14.86□□□□□ -0.03
VPS13D-205ENST00000473099 CNTNAP5Q8WYK1 1306 aa14.86□□□□□ -0.03
VPS13D-205ENST00000473099 PITPNM2Q9BZ72 1349 aa14.86□□□□□ -0.03
VPS13D-205ENST00000473099 SHTN1A0MZ66 631 aa14.85□□□□□ -0.03
VPS13D-205ENST00000473099 PALM3A6NDB9 673 aaPredicted RBP14.85□□□□□ -0.03
VPS13D-205ENST00000473099 KRT85P78386 507 aa14.85□□□□□ -0.03
VPS13D-205ENST00000473099 RESTQ13127 1097 aa14.85□□□□□ -0.03
VPS13D-205ENST00000473099 RASA3Q14644 834 aa14.85□□□□□ -0.03
VPS13D-205ENST00000473099 SAFBQ15424 915 aaKnown RBP eCLIP14.85□□□□□ -0.03
VPS13D-205ENST00000473099 C9orf131Q5VYM1 1079 aa14.85□□□□□ -0.03
VPS13D-205ENST00000473099 SAMD7Q7Z3H4 446 aa14.85□□□□□ -0.03
VPS13D-205ENST00000473099 SPZ1Q9BXG8 430 aa14.85□□□□□ -0.03
VPS13D-205ENST00000473099 TMEM39BQ9GZU3 492 aa14.85□□□□□ -0.03
VPS13D-205ENST00000473099 MAD2L2Q9UI95 211 aa14.85□□□□□ -0.03
VPS13D-205ENST00000473099 HACL1Q9UJ83 578 aa14.85□□□□□ -0.03
VPS13D-205ENST00000473099 PLEKHA8P1O95397 391 aa14.84□□□□□ -0.03
VPS13D-205ENST00000473099 SNHG28P0DPA3 235 aa14.84□□□□□ -0.03
VPS13D-205ENST00000473099 ICA1Q05084 483 aa14.84□□□□□ -0.03
VPS13D-205ENST00000473099 GPATCH4Q5T3I0 446 aaKnown RBP14.84□□□□□ -0.03
VPS13D-205ENST00000473099 DCAF15Q66K64 600 aa14.84□□□□□ -0.03
VPS13D-205ENST00000473099 TMEM87AQ8NBN3 555 aa14.84□□□□□ -0.03
VPS13D-205ENST00000473099 ZNF526Q8TF50 670 aaPredicted RBP14.84□□□□□ -0.03
VPS13D-205ENST00000473099 ZNF396Q96N95 335 aaPredicted RBP14.84□□□□□ -0.03
VPS13D-205ENST00000473099 ADARB2Q9NS39 739 aaKnown RBP14.84□□□□□ -0.03
VPS13D-205ENST00000473099 CLIP2Q9UDT6 1046 aa14.84□□□□□ -0.03
VPS13D-205ENST00000473099 PGAP2Q9UHJ9 254 aa14.84□□□□□ -0.03
VPS13D-205ENST00000473099 CFAP45Q9UL16 551 aa14.84□□□□□ -0.03
VPS13D-205ENST00000473099 FAM196BA6NMK8 535 aa14.83□□□□□ -0.04
VPS13D-205ENST00000473099 DTNBO60941 627 aa14.83□□□□□ -0.04
VPS13D-205ENST00000473099 PDHBP11177 359 aa14.83□□□□□ -0.04
VPS13D-205ENST00000473099 KRT40Q6A162 431 aa14.83□□□□□ -0.04
VPS13D-205ENST00000473099 FERMT3Q86UX7 667 aa14.83□□□□□ -0.04
VPS13D-205ENST00000473099 SRBD1Q8N5C6 995 aaKnown RBP14.83□□□□□ -0.04
VPS13D-205ENST00000473099 DCAF4Q8WV16 495 aa14.83□□□□□ -0.04
VPS13D-205ENST00000473099 SCAND2PQ9GZW5 306 aaPredicted RBP14.83□□□□□ -0.04
VPS13D-205ENST00000473099 SH2D4AQ9H788 454 aa14.83□□□□□ -0.04
VPS13D-205ENST00000473099 ARHGEF10LQ9HCE6 1279 aa14.83□□□□□ -0.04
VPS13D-205ENST00000473099 SH3GLB2Q9NR46 395 aa14.83□□□□□ -0.04
VPS13D-205ENST00000473099 WDR90Q96KV7 1748 aa14.83□□□□□ -0.04
VPS13D-205ENST00000473099 KLRF2D3W0D1 207 aa14.82□□□□□ -0.04
VPS13D-205ENST00000473099 hCG_1984214I3L0E3 225 aa14.82□□□□□ -0.04
VPS13D-205ENST00000473099 EGFRP00533 1210 aa14.82□□□□□ -0.04
VPS13D-205ENST00000473099 ASNSP08243 561 aa14.82□□□□□ -0.04
VPS13D-205ENST00000473099 SCG2P13521 617 aa14.82□□□□□ -0.04
VPS13D-205ENST00000473099 NCLP19338 710 aaKnown RBP14.82□□□□□ -0.04
VPS13D-205ENST00000473099 GNL2Q13823 731 aaKnown RBP14.82□□□□□ -0.04
VPS13D-205ENST00000473099 SEPT2Q15019 361 aa14.82□□□□□ -0.04
VPS13D-205ENST00000473099 CCDC82Q8N4S0 544 aa14.82□□□□□ -0.04
VPS13D-205ENST00000473099 ZNF713Q8N859 430 aaPredicted RBP14.82□□□□□ -0.04
VPS13D-205ENST00000473099 GMCL1P1Q8NEA9 526 aa14.82□□□□□ -0.04
VPS13D-205ENST00000473099 L3MBTL3Q96JM7 780 aaPredicted RBP14.82□□□□□ -0.04
VPS13D-205ENST00000473099 TEPSINQ96N21 525 aa14.82□□□□□ -0.04
VPS13D-205ENST00000473099 DEFB129Q9H1M3 183 aa14.82□□□□□ -0.04
VPS13D-205ENST00000473099 BRMS1Q9HCU9 246 aa14.82□□□□□ -0.04
VPS13D-205ENST00000473099 V9GY48 417 aaPredicted RBP14.82□□□□□ -0.04
VPS13D-205ENST00000473099 CEP350Q5VT06 3117 aa14.82□□□□□ -0.04
VPS13D-205ENST00000473099 PHIPQ8WWQ0 1821 aa14.82□□□□□ -0.04
VPS13D-205ENST00000473099 PPFIA3O75145 1194 aa14.81□□□□□ -0.04
VPS13D-205ENST00000473099 DDNO94850 711 aaPredicted RBP14.81□□□□□ -0.04
VPS13D-205ENST00000473099 GDF11O95390 407 aa14.81□□□□□ -0.04
VPS13D-205ENST00000473099 MBD3O95983 291 aa14.81□□□□□ -0.04
VPS13D-205ENST00000473099 GH2P01242 217 aa14.81□□□□□ -0.04
VPS13D-205ENST00000473099 MMP1P03956 469 aa14.81□□□□□ -0.04
VPS13D-205ENST00000473099 EEF2P13639 858 aaKnown RBP14.81□□□□□ -0.04
VPS13D-205ENST00000473099 CAP2P40123 477 aa14.81□□□□□ -0.04
VPS13D-205ENST00000473099 FOSBP53539 338 aa14.81□□□□□ -0.04
VPS13D-205ENST00000473099 ATP2B2Q01814 1243 aa14.81□□□□□ -0.04
VPS13D-205ENST00000473099 GUCY1B3Q02153 619 aa14.81□□□□□ -0.04
VPS13D-205ENST00000473099 KIF23Q02241 960 aaPredicted RBP14.81□□□□□ -0.04
VPS13D-205ENST00000473099 DNM1Q05193 864 aaKnown RBP14.81□□□□□ -0.04
VPS13D-205ENST00000473099 PFKFB3Q16875 520 aaPredicted RBP14.81□□□□□ -0.04
VPS13D-205ENST00000473099 CMTR1Q8N1G2 835 aaKnown RBP14.81□□□□□ -0.04
VPS13D-205ENST00000473099 LRRC47Q8N1G4 583 aaKnown RBP14.81□□□□□ -0.04
VPS13D-205ENST00000473099 CCDC148Q8NFR7 591 aa14.81□□□□□ -0.04
VPS13D-205ENST00000473099 TRPM4Q8TD43 1214 aa14.81□□□□□ -0.04
VPS13D-205ENST00000473099 FOXP1Q9H334 677 aaPredicted RBP14.81□□□□□ -0.04
VPS13D-205ENST00000473099 LMBRD1Q9NUN5 540 aa14.81□□□□□ -0.04
VPS13D-205ENST00000473099 ZBTB21Q9ULJ3 1066 aa14.81□□□□□ -0.04
VPS13D-205ENST00000473099 ELP1O95163 1332 aa14.81□□□□□ -0.04
VPS13D-205ENST00000473099 U2AF2P26368 475 aaKnown RBP eCLIP14.8□□□□□ -0.04
VPS13D-205ENST00000473099 CALML3P27482 149 aa14.8□□□□□ -0.04
VPS13D-205ENST00000473099 GUCY1A2P33402 732 aa14.8□□□□□ -0.04
VPS13D-205ENST00000473099 EPS15P42566 896 aa14.8□□□□□ -0.04
VPS13D-205ENST00000473099 ZNF543Q08ER8 600 aa14.8□□□□□ -0.04
VPS13D-205ENST00000473099 PKN1Q16512 942 aa14.8□□□□□ -0.04
VPS13D-205ENST00000473099 ANGEL2Q5VTE6 544 aaKnown RBP14.8□□□□□ -0.04
VPS13D-205ENST00000473099 STAG2Q8N3U4 1231 aa14.8□□□□□ -0.04
VPS13D-205ENST00000473099 CCDC12Q8WUD4 166 aaPredicted RBP14.8□□□□□ -0.04
VPS13D-205ENST00000473099 RRP36Q96EU6 259 aaKnown RBP14.8□□□□□ -0.04
VPS13D-205ENST00000473099 AIFM3Q96NN9 605 aa14.8□□□□□ -0.04
VPS13D-205ENST00000473099 RIOX1Q9H6W3 641 aa14.8□□□□□ -0.04
VPS13D-205ENST00000473099 GGA3Q9NZ52 723 aa14.8□□□□□ -0.04
VPS13D-205ENST00000473099 SEC63Q9UGP8 760 aaKnown RBP14.8□□□□□ -0.04
VPS13D-205ENST00000473099 USP17L5A8MUK1 530 aa14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms