RNA–Protein interactions for RNA: ENST00000468949.1

HDAC6-216, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-216ENST00000468949 MAP3K11Q16584 847 aa9.51□□□□□ -0.89
HDAC6-216ENST00000468949 NOL9Q5SY16 702 aaKnown RBP9.51□□□□□ -0.89
HDAC6-216ENST00000468949 MOB2Q70IA6 237 aa9.51□□□□□ -0.89
HDAC6-216ENST00000468949 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.51□□□□□ -0.89
HDAC6-216ENST00000468949 BRF1Q92994 677 aa9.51□□□□□ -0.89
HDAC6-216ENST00000468949 ZKSCAN4Q969J2 545 aaPredicted RBP9.51□□□□□ -0.89
HDAC6-216ENST00000468949 IL17RAQ96F46 866 aa9.51□□□□□ -0.89
HDAC6-216ENST00000468949 CEP95Q96GE4 821 aa9.51□□□□□ -0.89
HDAC6-216ENST00000468949 GOPCQ9HD26 462 aa9.51□□□□□ -0.89
HDAC6-216ENST00000468949 PRDM10Q9NQV6 1147 aa9.51□□□□□ -0.89
HDAC6-216ENST00000468949 TCP11L1Q9NUJ3 509 aa9.51□□□□□ -0.89
HDAC6-216ENST00000468949 FZD1Q9UP38 647 aa9.51□□□□□ -0.89
HDAC6-216ENST00000468949 MTMR7Q9Y216 660 aa9.51□□□□□ -0.89
HDAC6-216ENST00000468949 SLC12A7Q9Y666 1083 aa9.51□□□□□ -0.89
HDAC6-216ENST00000468949 PCNTO95613 3336 aa9.51□□□□□ -0.89
HDAC6-216ENST00000468949 SIPA1L1O43166 1804 aa9.51□□□□□ -0.89
HDAC6-216ENST00000468949 KLF18A0A0U1RQI7 1052 aa9.5□□□□□ -0.89
HDAC6-216ENST00000468949 PHF20L1A8MW92 1017 aa9.5□□□□□ -0.89
HDAC6-216ENST00000468949 NMT2O60551 498 aa9.5□□□□□ -0.89
HDAC6-216ENST00000468949 USP2O75604 605 aaPredicted RBP9.5□□□□□ -0.89
HDAC6-216ENST00000468949 HSP90AA1P07900 732 aaKnown RBP9.5□□□□□ -0.89
HDAC6-216ENST00000468949 CHRM1P11229 460 aaPredicted RBP9.5□□□□□ -0.89
HDAC6-216ENST00000468949 TOP1P11387 765 aaKnown RBP9.5□□□□□ -0.89
HDAC6-216ENST00000468949 AK2P54819 239 aa9.5□□□□□ -0.89
HDAC6-216ENST00000468949 ANTXR2P58335 489 aa9.5□□□□□ -0.89
HDAC6-216ENST00000468949 DGKHQ86XP1 1220 aa9.5□□□□□ -0.89
HDAC6-216ENST00000468949 LRRC47Q8N1G4 583 aaKnown RBP9.5□□□□□ -0.89
HDAC6-216ENST00000468949 ENAHQ8N8S7 591 aaPredicted RBP9.5□□□□□ -0.89
HDAC6-216ENST00000468949 CHMP4CQ96CF2 233 aa9.5□□□□□ -0.89
HDAC6-216ENST00000468949 SLC10A4Q96EP9 437 aa9.5□□□□□ -0.89
HDAC6-216ENST00000468949 TTC14Q96N46 770 aa9.5□□□□□ -0.89
HDAC6-216ENST00000468949 ELP3Q9H9T3 547 aa9.5□□□□□ -0.89
HDAC6-216ENST00000468949 SAGE1Q9NXZ1 904 aa9.5□□□□□ -0.89
HDAC6-216ENST00000468949 MTMR4Q9NYA4 1195 aa9.5□□□□□ -0.89
HDAC6-216ENST00000468949 CLIP2Q9UDT6 1046 aa9.5□□□□□ -0.89
HDAC6-216ENST00000468949 ZNF112Q9UJU3 913 aa9.5□□□□□ -0.89
HDAC6-216ENST00000468949 TACC3Q9Y6A5 838 aa9.5□□□□□ -0.89
HDAC6-216ENST00000468949 DOCK1Q14185 1865 aa9.49□□□□□ -0.89
HDAC6-216ENST00000468949 UNCXA6NJT0 531 aa9.49□□□□□ -0.89
HDAC6-216ENST00000468949 DDAH1O94760 285 aa9.49□□□□□ -0.89
HDAC6-216ENST00000468949 CALM1P0DP23 149 aa9.49□□□□□ -0.89
HDAC6-216ENST00000468949 CALM2P0DP24 149 aa9.49□□□□□ -0.89
HDAC6-216ENST00000468949 CALM3P0DP25 149 aa9.49□□□□□ -0.89
HDAC6-216ENST00000468949 EEF2P13639 858 aaKnown RBP9.49□□□□□ -0.89
HDAC6-216ENST00000468949 KIF5BP33176 963 aa9.49□□□□□ -0.89
HDAC6-216ENST00000468949 LIFRP42702 1097 aa9.49□□□□□ -0.89
HDAC6-216ENST00000468949 LBX1P52954 281 aa9.49□□□□□ -0.89
HDAC6-216ENST00000468949 USP14P54578 494 aa9.49□□□□□ -0.89
HDAC6-216ENST00000468949 EXOSC10Q01780 885 aaKnown RBP9.49□□□□□ -0.89
HDAC6-216ENST00000468949 KIF23Q02241 960 aaPredicted RBP9.49□□□□□ -0.89
HDAC6-216ENST00000468949 IKQ13123 557 aaPredicted RBP9.49□□□□□ -0.89
HDAC6-216ENST00000468949 ZYXQ15942 572 aaKnown RBP9.49□□□□□ -0.89
HDAC6-216ENST00000468949 CCDC96Q2M329 555 aa9.49□□□□□ -0.89
HDAC6-216ENST00000468949 LDLRAD1Q5T700 205 aa9.49□□□□□ -0.89
HDAC6-216ENST00000468949 COL13A1Q5TAT6 717 aaPredicted RBP9.49□□□□□ -0.89
HDAC6-216ENST00000468949 CPLX2Q6PUV4 134 aaKnown RBP9.49□□□□□ -0.89
HDAC6-216ENST00000468949 MICU3Q86XE3 530 aa9.49□□□□□ -0.89
HDAC6-216ENST00000468949 ERO1BQ86YB8 467 aa9.49□□□□□ -0.89
HDAC6-216ENST00000468949 CLEC10AQ8IUN9 316 aa9.49□□□□□ -0.89
HDAC6-216ENST00000468949 TNS4Q8IZW8 715 aa9.49□□□□□ -0.89
HDAC6-216ENST00000468949 PNMA1Q8ND90 353 aa9.49□□□□□ -0.89
HDAC6-216ENST00000468949 CTCFLQ8NI51 663 aaPredicted RBP9.49□□□□□ -0.89
HDAC6-216ENST00000468949 NUP133Q8WUM0 1156 aa9.49□□□□□ -0.89
HDAC6-216ENST00000468949 OTUD5Q96G74 571 aa9.49□□□□□ -0.89
HDAC6-216ENST00000468949 KIF2CQ99661 725 aa9.49□□□□□ -0.89
HDAC6-216ENST00000468949 LY9Q9HBG7 655 aa9.49□□□□□ -0.89
HDAC6-216ENST00000468949 TMOD4Q9NZQ9 345 aa9.49□□□□□ -0.89
HDAC6-216ENST00000468949 NYAP2Q9P242 653 aa9.49□□□□□ -0.89
HDAC6-216ENST00000468949 ZHX2Q9Y6X8 837 aa9.49□□□□□ -0.89
HDAC6-216ENST00000468949 IGKV6D-41A0A0C4DH26 115 aa9.48□□□□□ -0.89
HDAC6-216ENST00000468949 TRIM75PA6NK02 468 aa9.48□□□□□ -0.89
HDAC6-216ENST00000468949 GOLGA8AA7E2F4 631 aa9.48□□□□□ -0.89
HDAC6-216ENST00000468949 USP17L10C9JJH3 530 aa9.48□□□□□ -0.89
HDAC6-216ENST00000468949 CPLX1O14810 134 aa9.48□□□□□ -0.89
HDAC6-216ENST00000468949 ZBTB43O43298 467 aa9.48□□□□□ -0.89
HDAC6-216ENST00000468949 DHX16O60231 1041 aaKnown RBP9.48□□□□□ -0.89
HDAC6-216ENST00000468949 ZBTB48P10074 688 aaPredicted RBP9.48□□□□□ -0.89
HDAC6-216ENST00000468949 PTPRAP18433 802 aa9.48□□□□□ -0.89
HDAC6-216ENST00000468949 METAP2P50579 478 aaKnown RBP eCLIP9.48□□□□□ -0.89
HDAC6-216ENST00000468949 APOBRQ0VD83 1088 aa9.48□□□□□ -0.89
HDAC6-216ENST00000468949 SREBF2Q12772 1141 aa9.48□□□□□ -0.89
HDAC6-216ENST00000468949 MTMR2Q13614 643 aa9.48□□□□□ -0.89
HDAC6-216ENST00000468949 SHROOM1Q2M3G4 852 aaPredicted RBP9.48□□□□□ -0.89
HDAC6-216ENST00000468949 ZNF654Q8IZM8 581 aa9.48□□□□□ -0.89
HDAC6-216ENST00000468949 ZNF280CQ8ND82 737 aa9.48□□□□□ -0.89
HDAC6-216ENST00000468949 OPTNQ96CV9 577 aa9.48□□□□□ -0.89
HDAC6-216ENST00000468949 ZSCAN31Q96LW9 406 aaPredicted RBP9.48□□□□□ -0.89
HDAC6-216ENST00000468949 ZIC5Q96T25 663 aa9.48□□□□□ -0.89
HDAC6-216ENST00000468949 SLKQ9H2G2 1235 aaPredicted RBP9.48□□□□□ -0.89
HDAC6-216ENST00000468949 SH2B1Q9NRF2 756 aaPredicted RBP9.48□□□□□ -0.89
HDAC6-216ENST00000468949 IL17RBQ9NRM6 502 aa9.48□□□□□ -0.89
HDAC6-216ENST00000468949 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.48□□□□□ -0.89
HDAC6-216ENST00000468949 SYNPO2Q9UMS6 1093 aa9.48□□□□□ -0.89
HDAC6-216ENST00000468949 LIMCH1Q9UPQ0 1083 aa9.48□□□□□ -0.89
HDAC6-216ENST00000468949 SNCAIPQ9Y6H5 919 aa9.48□□□□□ -0.89
HDAC6-216ENST00000468949 CCDC196A0A1B0GTZ2 297 aa9.47□□□□□ -0.89
HDAC6-216ENST00000468949 SPDYE5A6NIY4 337 aa9.47□□□□□ -0.89
HDAC6-216ENST00000468949 SLC1A4P43007 532 aa9.47□□□□□ -0.89
HDAC6-216ENST00000468949 PPATQ06203 517 aa9.47□□□□□ -0.89
HDAC6-216ENST00000468949 STK3Q13188 491 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms