RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 BBXQ8WY36 941 aaPredicted RBP8.75□□□□□ -1.01
COL6A3-208ENST00000468792 FERMT2Q96AC1 680 aa8.75□□□□□ -1.01
COL6A3-208ENST00000468792 ZDHHC15Q96MV8 337 aa8.75□□□□□ -1.01
COL6A3-208ENST00000468792 GPR101Q96P66 508 aaPredicted RBP8.75□□□□□ -1.01
COL6A3-208ENST00000468792 SDF4Q9BRK5 362 aa8.75□□□□□ -1.01
COL6A3-208ENST00000468792 PYM1Q9BRP8 204 aaKnown RBP8.75□□□□□ -1.01
COL6A3-208ENST00000468792 SPZ1Q9BXG8 430 aa8.75□□□□□ -1.01
COL6A3-208ENST00000468792 EHD4Q9H223 541 aa8.75□□□□□ -1.01
COL6A3-208ENST00000468792 VPS33BQ9H267 617 aa8.75□□□□□ -1.01
COL6A3-208ENST00000468792 RRAGDQ9NQL2 400 aaPredicted RBP8.75□□□□□ -1.01
COL6A3-208ENST00000468792 HOOK1Q9UJC3 728 aaKnown RBP8.75□□□□□ -1.01
COL6A3-208ENST00000468792 JAG2Q9Y219 1238 aa8.75□□□□□ -1.01
COL6A3-208ENST00000468792 ZKSCAN5Q9Y2L8 839 aa8.75□□□□□ -1.01
COL6A3-208ENST00000468792 IGKV6D-41A0A0C4DH26 115 aa8.74□□□□□ -1.01
COL6A3-208ENST00000468792 TRIM75PA6NK02 468 aa8.74□□□□□ -1.01
COL6A3-208ENST00000468792 GOLGA6L6A8MZA4 724 aa8.74□□□□□ -1.01
COL6A3-208ENST00000468792 hCG_1984214I3L0E3 225 aa8.74□□□□□ -1.01
COL6A3-208ENST00000468792 TOP1P11387 765 aaKnown RBP8.74□□□□□ -1.01
COL6A3-208ENST00000468792 NT5DC1Q5TFE4 455 aa8.74□□□□□ -1.01
COL6A3-208ENST00000468792 C2CD5Q86YS7 1000 aa8.74□□□□□ -1.01
COL6A3-208ENST00000468792 MAPKAPK5Q8IW41 473 aa8.74□□□□□ -1.01
COL6A3-208ENST00000468792 CEP57L1Q8IYX8 460 aa8.74□□□□□ -1.01
COL6A3-208ENST00000468792 STK11IPQ8N1F8 1099 aa8.74□□□□□ -1.01
COL6A3-208ENST00000468792 ZNF713Q8N859 430 aaPredicted RBP8.74□□□□□ -1.01
COL6A3-208ENST00000468792 SLC16A10Q8TF71 515 aa8.74□□□□□ -1.01
COL6A3-208ENST00000468792 TEKT1Q969V4 418 aa8.74□□□□□ -1.01
COL6A3-208ENST00000468792 SHISA4Q96DD7 197 aa8.74□□□□□ -1.01
COL6A3-208ENST00000468792 CCDC34Q96HJ3 373 aa8.74□□□□□ -1.01
COL6A3-208ENST00000468792 TMEM47Q9BQJ4 181 aa8.74□□□□□ -1.01
COL6A3-208ENST00000468792 STK32BQ9NY57 414 aa8.74□□□□□ -1.01
COL6A3-208ENST00000468792 FAM13BQ9NYF5 915 aa8.74□□□□□ -1.01
COL6A3-208ENST00000468792 MAD2L2Q9UI95 211 aa8.74□□□□□ -1.01
COL6A3-208ENST00000468792 FBXO2Q9UK22 296 aaPredicted RBP8.74□□□□□ -1.01
COL6A3-208ENST00000468792 KCNJ14Q9UNX9 436 aa8.74□□□□□ -1.01
COL6A3-208ENST00000468792 UBE2Q2LH0YL09 131 aa8.73□□□□□ -1.01
COL6A3-208ENST00000468792 M0R2N6 131 aa8.73□□□□□ -1.01
COL6A3-208ENST00000468792 IKBKBO14920 756 aa8.73□□□□□ -1.01
COL6A3-208ENST00000468792 NMT2O60551 498 aa8.73□□□□□ -1.01
COL6A3-208ENST00000468792 SNHG28P0DPA3 235 aa8.73□□□□□ -1.01
COL6A3-208ENST00000468792 MSNP26038 577 aaKnown RBP8.73□□□□□ -1.01
COL6A3-208ENST00000468792 NLRP12P59046 1061 aa8.73□□□□□ -1.01
COL6A3-208ENST00000468792 EVX2Q03828 476 aa8.73□□□□□ -1.01
COL6A3-208ENST00000468792 NR5A1Q13285 461 aa8.73□□□□□ -1.01
COL6A3-208ENST00000468792 ORC2Q13416 577 aaPredicted RBP8.73□□□□□ -1.01
COL6A3-208ENST00000468792 DHX8Q14562 1220 aaKnown RBP8.73□□□□□ -1.01
COL6A3-208ENST00000468792 ARL6IP4Q66PJ3 421 aaKnown RBP8.73□□□□□ -1.01
COL6A3-208ENST00000468792 APOBEC3HQ6NTF7 200 aaKnown RBP8.73□□□□□ -1.01
COL6A3-208ENST00000468792 SLC51AQ86UW1 340 aa8.73□□□□□ -1.01
COL6A3-208ENST00000468792 METTL16Q86W50 562 aaKnown RBP8.73□□□□□ -1.01
COL6A3-208ENST00000468792 PLA2G4DQ86XP0 818 aa8.73□□□□□ -1.01
COL6A3-208ENST00000468792 CERS5Q8N5B7 392 aa8.73□□□□□ -1.01
COL6A3-208ENST00000468792 CCDC148Q8NFR7 591 aa8.73□□□□□ -1.01
COL6A3-208ENST00000468792 CCDC12Q8WUD4 166 aaPredicted RBP8.73□□□□□ -1.01
COL6A3-208ENST00000468792 DYNLL2Q96FJ2 89 aa8.73□□□□□ -1.01
COL6A3-208ENST00000468792 MRFAP1L1Q96HT8 127 aa8.73□□□□□ -1.01
COL6A3-208ENST00000468792 CCDC17Q96LX7 622 aa8.73□□□□□ -1.01
COL6A3-208ENST00000468792 IDI2Q9BXS1 227 aa8.73□□□□□ -1.01
COL6A3-208ENST00000468792 DHX36Q9H2U1 1008 aaKnown RBP8.73□□□□□ -1.01
COL6A3-208ENST00000468792 CABP5Q9NP86 173 aa8.73□□□□□ -1.01
COL6A3-208ENST00000468792 VPS54Q9P1Q0 977 aa8.73□□□□□ -1.01
COL6A3-208ENST00000468792 RGS17Q9UGC6 210 aaPredicted RBP8.73□□□□□ -1.01
COL6A3-208ENST00000468792 SERPINA10Q9UK55 444 aa8.73□□□□□ -1.01
COL6A3-208ENST00000468792 KCNH3Q9ULD8 1083 aa8.73□□□□□ -1.01
COL6A3-208ENST00000468792 TTF2Q9UNY4 1162 aaKnown RBP8.73□□□□□ -1.01
COL6A3-208ENST00000468792 MYH1P12882 1939 aa8.73□□□□□ -1.01
COL6A3-208ENST00000468792 COL2A1P02458 1487 aaPredicted RBP8.72□□□□□ -1.01
COL6A3-208ENST00000468792 ESYT2A0FGR8 921 aa8.72□□□□□ -1.01
COL6A3-208ENST00000468792 GOLGA6L19H0YKK7 550 aa8.72□□□□□ -1.01
COL6A3-208ENST00000468792 LAD1O00515 517 aa8.72□□□□□ -1.01
COL6A3-208ENST00000468792 MARCKSP29966 332 aaPredicted RBP8.72□□□□□ -1.01
COL6A3-208ENST00000468792 ATP2C1P98194 919 aaPredicted RBP8.72□□□□□ -1.01
COL6A3-208ENST00000468792 MDM2Q00987 491 aaPredicted RBP8.72□□□□□ -1.01
COL6A3-208ENST00000468792 KIAA2012Q0VF49 1180 aa8.72□□□□□ -1.01
COL6A3-208ENST00000468792 SEMA3FQ13275 785 aa8.72□□□□□ -1.01
COL6A3-208ENST00000468792 ZRSR1Q15695 479 aaKnown RBP8.72□□□□□ -1.01
COL6A3-208ENST00000468792 DACT2Q5SW24 774 aa8.72□□□□□ -1.01
COL6A3-208ENST00000468792 KRBA2Q6ZNG9 492 aa8.72□□□□□ -1.01
COL6A3-208ENST00000468792 CMTR1Q8N1G2 835 aaKnown RBP8.72□□□□□ -1.01
COL6A3-208ENST00000468792 CCDC82Q8N4S0 544 aa8.72□□□□□ -1.01
COL6A3-208ENST00000468792 TRIML1Q8N9V2 468 aa8.72□□□□□ -1.01
COL6A3-208ENST00000468792 SPATA20Q8TB22 786 aa8.72□□□□□ -1.01
COL6A3-208ENST00000468792 OXER1Q8TDS5 423 aa8.72□□□□□ -1.01
COL6A3-208ENST00000468792 OSBPL5Q9H0X9 879 aaPredicted RBP8.72□□□□□ -1.01
COL6A3-208ENST00000468792 DNAJC25Q9H1X3 360 aa8.72□□□□□ -1.01
COL6A3-208ENST00000468792 BARHL2Q9NY43 387 aa8.72□□□□□ -1.01
COL6A3-208ENST00000468792 MTMR4Q9NYA4 1195 aa8.72□□□□□ -1.01
COL6A3-208ENST00000468792 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.72□□□□□ -1.01
COL6A3-208ENST00000468792 SERPINB13Q9UIV8 391 aa8.72□□□□□ -1.01
COL6A3-208ENST00000468792 SYNPO2Q9UMS6 1093 aa8.72□□□□□ -1.01
COL6A3-208ENST00000468792 PCDHA4Q9UN74 947 aa8.72□□□□□ -1.01
COL6A3-208ENST00000468792 PCDHB6Q9Y5E3 794 aa8.72□□□□□ -1.01
COL6A3-208ENST00000468792 USP17L3A6NCW0 530 aa8.71□□□□□ -1.02
COL6A3-208ENST00000468792 USP17L4A6NCW7 530 aa8.71□□□□□ -1.02
COL6A3-208ENST00000468792 SMTNL1A8MU46 457 aa8.71□□□□□ -1.02
COL6A3-208ENST00000468792 G3V3G9 751 aa8.71□□□□□ -1.02
COL6A3-208ENST00000468792 RIMBP2O15034 1052 aa8.71□□□□□ -1.02
COL6A3-208ENST00000468792 AP5Z1O43299 807 aa8.71□□□□□ -1.02
COL6A3-208ENST00000468792 HLA-DOAP06340 250 aa8.71□□□□□ -1.02
COL6A3-208ENST00000468792 PARP1P09874 1014 aaKnown RBP8.71□□□□□ -1.02
COL6A3-208ENST00000468792 SARSP49591 514 aaKnown RBP8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms