RNA–Protein interactions for RNA: ENST00000468545.1

TMEM39A-204, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 575 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-204ENST00000468545 SUPT16HQ9Y5B9 1047 aaKnown RBP5.24□□□□□ -1.57
TMEM39A-204ENST00000468545 AK5Q9Y6K8 562 aa5.24□□□□□ -1.57
TMEM39A-204ENST00000468545 MAP3K5Q99683 1374 aa5.24□□□□□ -1.57
TMEM39A-204ENST00000468545 LMO7Q8WWI1 1683 aa5.24□□□□□ -1.57
TMEM39A-204ENST00000468545 ZNF521Q96K83 1311 aa5.23□□□□□ -1.57
TMEM39A-204ENST00000468545 SLIT2O94813 1529 aa5.23□□□□□ -1.57
TMEM39A-204ENST00000468545 RGPD1P0DJD0 1748 aa5.23□□□□□ -1.57
TMEM39A-204ENST00000468545 BTBD11A6QL63 1104 aa5.23□□□□□ -1.57
TMEM39A-204ENST00000468545 H3BRJ5 948 aa5.23□□□□□ -1.57
TMEM39A-204ENST00000468545 TCERG1O14776 1098 aaKnown RBP5.23□□□□□ -1.57
TMEM39A-204ENST00000468545 KCNQ3O43525 872 aa5.23□□□□□ -1.57
TMEM39A-204ENST00000468545 SORBS3O60504 671 aa5.23□□□□□ -1.57
TMEM39A-204ENST00000468545 IGHA1P01876 353 aa5.23□□□□□ -1.57
TMEM39A-204ENST00000468545 HSP90AB1P08238 724 aaKnown RBP5.23□□□□□ -1.57
TMEM39A-204ENST00000468545 FCGRTP55899 365 aa5.23□□□□□ -1.57
TMEM39A-204ENST00000468545 SLC39A6Q13433 755 aa5.23□□□□□ -1.57
TMEM39A-204ENST00000468545 SPRED3Q2MJR0 410 aa5.23□□□□□ -1.57
TMEM39A-204ENST00000468545 DUSP27Q5VZP5 1158 aa5.23□□□□□ -1.57
TMEM39A-204ENST00000468545 ZNF772Q68DY9 489 aaPredicted RBP5.23□□□□□ -1.57
TMEM39A-204ENST00000468545 DTHD1Q6ZMT9 781 aa5.23□□□□□ -1.57
TMEM39A-204ENST00000468545 ILDR2Q71H61 639 aa5.23□□□□□ -1.57
TMEM39A-204ENST00000468545 VN1R5Q7Z5H4 357 aa5.23□□□□□ -1.57
TMEM39A-204ENST00000468545 MAP4K3Q8IVH8 894 aa5.23□□□□□ -1.57
TMEM39A-204ENST00000468545 FAM161BQ96MY7 647 aa5.23□□□□□ -1.57
TMEM39A-204ENST00000468545 CLEC4MQ9H2X3 399 aaPredicted RBP5.23□□□□□ -1.57
TMEM39A-204ENST00000468545 ZNF576Q9H609 170 aa5.23□□□□□ -1.57
TMEM39A-204ENST00000468545 SH2B1Q9NRF2 756 aaPredicted RBP5.23□□□□□ -1.57
TMEM39A-204ENST00000468545 IFT57Q9NWB7 429 aa5.23□□□□□ -1.57
TMEM39A-204ENST00000468545 PPM1HQ9ULR3 514 aa5.23□□□□□ -1.57
TMEM39A-204ENST00000468545 BCL9LQ86UU0 1499 aa5.23□□□□□ -1.57
TMEM39A-204ENST00000468545 IL16Q14005 1332 aa5.23□□□□□ -1.57
TMEM39A-204ENST00000468545 PCDH11XQ9BZA7 1347 aa5.23□□□□□ -1.57
TMEM39A-204ENST00000468545 PCDH11YQ9BZA8 1340 aa5.23□□□□□ -1.57
TMEM39A-204ENST00000468545 PLCH1Q4KWH8 1693 aa5.22□□□□□ -1.57
TMEM39A-204ENST00000468545 CHL1O00533 1208 aa5.22□□□□□ -1.57
TMEM39A-204ENST00000468545 USP17L7P0C7H9 530 aa5.22□□□□□ -1.57
TMEM39A-204ENST00000468545 ZNF853P0CG23 659 aa5.22□□□□□ -1.57
TMEM39A-204ENST00000468545 RXRBP28702 533 aa5.22□□□□□ -1.57
TMEM39A-204ENST00000468545 IRX6P78412 446 aaPredicted RBP5.22□□□□□ -1.57
TMEM39A-204ENST00000468545 MRPL58Q14197 206 aaKnown RBP5.22□□□□□ -1.57
TMEM39A-204ENST00000468545 KRT24Q2M2I5 525 aa5.22□□□□□ -1.57
TMEM39A-204ENST00000468545 PLA2G4EQ3MJ16 856 aa5.22□□□□□ -1.57
TMEM39A-204ENST00000468545 RPS26P11Q5JNZ5 115 aaPredicted RBP5.22□□□□□ -1.57
TMEM39A-204ENST00000468545 TRAPPC3LQ5T215 181 aa5.22□□□□□ -1.57
TMEM39A-204ENST00000468545 FAM117BQ6P1L5 589 aa5.22□□□□□ -1.57
TMEM39A-204ENST00000468545 DMRTC2Q8IXT2 367 aaPredicted RBP5.22□□□□□ -1.57
TMEM39A-204ENST00000468545 TRMT2AQ8IZ69 625 aaKnown RBP5.22□□□□□ -1.57
TMEM39A-204ENST00000468545 MARCH10Q8NA82 808 aaPredicted RBP5.22□□□□□ -1.57
TMEM39A-204ENST00000468545 C8orf58Q8NAV2 365 aa5.22□□□□□ -1.57
TMEM39A-204ENST00000468545 C3orf58Q8NDZ4 430 aa5.22□□□□□ -1.57
TMEM39A-204ENST00000468545 WNT8BQ93098 351 aa5.22□□□□□ -1.57
TMEM39A-204ENST00000468545 CRELD1Q96HD1 420 aa5.22□□□□□ -1.57
TMEM39A-204ENST00000468545 PLVAPQ9BX97 442 aa5.22□□□□□ -1.57
TMEM39A-204ENST00000468545 VTI1BQ9UEU0 232 aa5.22□□□□□ -1.57
TMEM39A-204ENST00000468545 RCAN3Q9UKA8 241 aa5.22□□□□□ -1.57
TMEM39A-204ENST00000468545 ABCC6O95255 1503 aa5.22□□□□□ -1.57
TMEM39A-204ENST00000468545 OVOS2A0A0G2JMS6 1433 aa5.22□□□□□ -1.57
TMEM39A-204ENST00000468545 FANCIQ9NVI1 1328 aa5.22□□□□□ -1.57
TMEM39A-204ENST00000468545 A0A0A0MRY4 1105 aa5.21□□□□□ -1.58
TMEM39A-204ENST00000468545 LINC01387J3KSC0 135 aa5.21□□□□□ -1.58
TMEM39A-204ENST00000468545 PLIN1O60240 522 aa5.21□□□□□ -1.58
TMEM39A-204ENST00000468545 BCAR3O75815 825 aa5.21□□□□□ -1.58
TMEM39A-204ENST00000468545 EIF2S2P20042 333 aaKnown RBP5.21□□□□□ -1.58
TMEM39A-204ENST00000468545 CANXP27824 592 aaKnown RBP5.21□□□□□ -1.58
TMEM39A-204ENST00000468545 RAC1P63000 192 aa5.21□□□□□ -1.58
TMEM39A-204ENST00000468545 RBM6P78332 1123 aaKnown RBP5.21□□□□□ -1.58
TMEM39A-204ENST00000468545 PCDH1Q08174 1060 aa5.21□□□□□ -1.58
TMEM39A-204ENST00000468545 IKBKEQ14164 716 aa5.21□□□□□ -1.58
TMEM39A-204ENST00000468545 TWISTNBQ3B726 338 aaPredicted RBP5.21□□□□□ -1.58
TMEM39A-204ENST00000468545 TXNDC11Q6PKC3 985 aa5.21□□□□□ -1.58
TMEM39A-204ENST00000468545 FMR1NBQ8N0W7 255 aaPredicted RBP5.21□□□□□ -1.58
TMEM39A-204ENST00000468545 TTC5Q8N0Z6 440 aa5.21□□□□□ -1.58
TMEM39A-204ENST00000468545 TSPYL6Q8N831 410 aa5.21□□□□□ -1.58
TMEM39A-204ENST00000468545 SLC52A2Q9HAB3 445 aa5.21□□□□□ -1.58
TMEM39A-204ENST00000468545 TMOD3Q9NYL9 352 aa5.21□□□□□ -1.58
TMEM39A-204ENST00000468545 NCAPD2Q15021 1401 aa5.21□□□□□ -1.58
TMEM39A-204ENST00000468545 FAM208AQ9UK61 1670 aaKnown RBP5.21□□□□□ -1.58
TMEM39A-204ENST00000468545 ERVV-2B6SEH9 535 aa5.2□□□□□ -1.58
TMEM39A-204ENST00000468545 MSTNO14793 375 aa5.2□□□□□ -1.58
TMEM39A-204ENST00000468545 FSCN2O14926 492 aa5.2□□□□□ -1.58
TMEM39A-204ENST00000468545 EIF4EBP3O60516 100 aaPredicted RBP5.2□□□□□ -1.58
TMEM39A-204ENST00000468545 VAMP4O75379 141 aa5.2□□□□□ -1.58
TMEM39A-204ENST00000468545 B3GALT4O96024 378 aa5.2□□□□□ -1.58
TMEM39A-204ENST00000468545 ITGB2P05107 769 aa5.2□□□□□ -1.58
TMEM39A-204ENST00000468545 ESRRAP11474 423 aaPredicted RBP5.2□□□□□ -1.58
TMEM39A-204ENST00000468545 VAMP1P23763 118 aa5.2□□□□□ -1.58
TMEM39A-204ENST00000468545 CDC25BP30305 580 aa5.2□□□□□ -1.58
TMEM39A-204ENST00000468545 SETDB1Q15047 1291 aa5.2□□□□□ -1.58
TMEM39A-204ENST00000468545 PRRT3Q5FWE3 981 aa5.2□□□□□ -1.58
TMEM39A-204ENST00000468545 ALYREFQ86V81 257 aaKnown RBP5.2□□□□□ -1.58
TMEM39A-204ENST00000468545 PIGBQ92521 554 aa5.2□□□□□ -1.58
TMEM39A-204ENST00000468545 FRAT1Q92837 279 aaPredicted RBP5.2□□□□□ -1.58
TMEM39A-204ENST00000468545 SOX17Q9H6I2 414 aaPredicted RBP5.2□□□□□ -1.58
TMEM39A-204ENST00000468545 OSGEPQ9NPF4 335 aa5.2□□□□□ -1.58
TMEM39A-204ENST00000468545 RGS17Q9UGC6 210 aaPredicted RBP5.2□□□□□ -1.58
TMEM39A-204ENST00000468545 AKAP2Q9Y2D5 859 aa5.2□□□□□ -1.58
TMEM39A-204ENST00000468545 DLG5Q8TDM6 1919 aa5.2□□□□□ -1.58
TMEM39A-204ENST00000468545 ATRNO75882 1429 aa5.2□□□□□ -1.58
TMEM39A-204ENST00000468545 NRAPQ86VF7 1730 aa5.2□□□□□ -1.58
TMEM39A-204ENST00000468545 LOC100996750A0A140TA64 210 aa5.19□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms