RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 GPR142Q7Z601 462 aa22.83■■□□□ 1.25
COL7A1-207ENST00000467985 TANGO6Q9C0B7 1094 aa22.83■■□□□ 1.25
COL7A1-207ENST00000467985 PORCNQ9H237 461 aa22.83■■□□□ 1.25
COL7A1-207ENST00000467985 ZNF287Q9HBT7 754 aa22.83■■□□□ 1.25
COL7A1-207ENST00000467985 PAK6Q9NQU5 681 aaPredicted RBP22.83■■□□□ 1.25
COL7A1-207ENST00000467985 ROBO3Q96MS0 1386 aa22.83■■□□□ 1.25
COL7A1-207ENST00000467985 CNMDO75829 334 aa22.82■■□□□ 1.24
COL7A1-207ENST00000467985 APPP05067 770 aa22.82■■□□□ 1.24
COL7A1-207ENST00000467985 RGS2P41220 211 aa22.82■■□□□ 1.24
COL7A1-207ENST00000467985 TDO2P48775 406 aa22.82■■□□□ 1.24
COL7A1-207ENST00000467985 SIAH1Q8IUQ4 282 aa22.82■■□□□ 1.24
COL7A1-207ENST00000467985 NACAP1Q9BZK3 213 aa22.82■■□□□ 1.24
COL7A1-207ENST00000467985 VCPKMTQ9H867 229 aa22.82■■□□□ 1.24
COL7A1-207ENST00000467985 MKNK2Q9HBH9 465 aa22.82■■□□□ 1.24
COL7A1-207ENST00000467985 STAP2Q9UGK3 403 aa22.82■■□□□ 1.24
COL7A1-207ENST00000467985 MINDY4BA8MYZ0 360 aa22.81■■□□□ 1.24
COL7A1-207ENST00000467985 PATL2C9JE40 543 aaKnown RBP22.81■■□□□ 1.24
COL7A1-207ENST00000467985 SMIM22K7EJ46 135 aa22.81■■□□□ 1.24
COL7A1-207ENST00000467985 M0R2C6 588 aa22.81■■□□□ 1.24
COL7A1-207ENST00000467985 MORN1Q5T089 497 aa22.81■■□□□ 1.24
COL7A1-207ENST00000467985 MB21D1Q8N884 522 aa22.81■■□□□ 1.24
COL7A1-207ENST00000467985 USP6NLQ92738 828 aa22.81■■□□□ 1.24
COL7A1-207ENST00000467985 RWDD1Q9H446 243 aaPredicted RBP22.81■■□□□ 1.24
COL7A1-207ENST00000467985 WDR46O15213 610 aaKnown RBP22.8■■□□□ 1.24
COL7A1-207ENST00000467985 CYP2B6P20813 491 aa22.8■■□□□ 1.24
COL7A1-207ENST00000467985 ZMYM1Q5SVZ6 1142 aa22.8■■□□□ 1.24
COL7A1-207ENST00000467985 CLEC10AQ8IUN9 316 aa22.8■■□□□ 1.24
COL7A1-207ENST00000467985 DEFB118Q96PH6 123 aa22.8■■□□□ 1.24
COL7A1-207ENST00000467985 XRN2Q9H0D6 950 aaKnown RBP eCLIP22.8■■□□□ 1.24
COL7A1-207ENST00000467985 BTBD7Q9P203 1132 aa22.8■■□□□ 1.24
COL7A1-207ENST00000467985 RPTORQ8N122 1335 aa22.8■■□□□ 1.24
COL7A1-207ENST00000467985 TFRCP02786 760 aaKnown RBP22.79■■□□□ 1.24
COL7A1-207ENST00000467985 EEF2P13639 858 aaKnown RBP22.79■■□□□ 1.24
COL7A1-207ENST00000467985 ZKSCAN1P17029 563 aaPredicted RBP22.79■■□□□ 1.24
COL7A1-207ENST00000467985 ATP2B2Q01814 1243 aa22.79■■□□□ 1.24
COL7A1-207ENST00000467985 UBE2Q1Q7Z7E8 422 aa22.79■■□□□ 1.24
COL7A1-207ENST00000467985 TICAM2Q86XR7 235 aa22.79■■□□□ 1.24
COL7A1-207ENST00000467985 TRIB2Q92519 343 aa22.79■■□□□ 1.24
COL7A1-207ENST00000467985 EVI5LQ96CN4 794 aa22.79■■□□□ 1.24
COL7A1-207ENST00000467985 APBA2Q99767 749 aa22.79■■□□□ 1.24
COL7A1-207ENST00000467985 EPB41L4AQ9HCS5 686 aaPredicted RBP22.79■■□□□ 1.24
COL7A1-207ENST00000467985 GOPCQ9HD26 462 aa22.79■■□□□ 1.24
COL7A1-207ENST00000467985 HMX1Q9NP08 348 aaPredicted RBP22.79■■□□□ 1.24
COL7A1-207ENST00000467985 IVNS1ABPQ9Y6Y0 642 aa22.79■■□□□ 1.24
COL7A1-207ENST00000467985 SLC15A5A6NIM6 579 aa22.78■■□□□ 1.24
COL7A1-207ENST00000467985 FLOT1O75955 427 aa22.78■■□□□ 1.24
COL7A1-207ENST00000467985 FARP2O94887 1054 aaPredicted RBP22.78■■□□□ 1.24
COL7A1-207ENST00000467985 RASA1P20936 1047 aa22.78■■□□□ 1.24
COL7A1-207ENST00000467985 PDE1AP54750 535 aa22.78■■□□□ 1.24
COL7A1-207ENST00000467985 KIAA1755Q5JYT7 1200 aa22.78■■□□□ 1.24
COL7A1-207ENST00000467985 WDR78Q5VTH9 848 aa22.78■■□□□ 1.24
COL7A1-207ENST00000467985 IFNL3Q8IZI9 196 aa22.78■■□□□ 1.24
COL7A1-207ENST00000467985 SPICE1Q8N0Z3 855 aa22.78■■□□□ 1.24
COL7A1-207ENST00000467985 HTATIP2Q9BUP3 242 aa22.78■■□□□ 1.24
COL7A1-207ENST00000467985 CRISPLD2Q9H0B8 497 aa22.78■■□□□ 1.24
COL7A1-207ENST00000467985 DSG3P32926 999 aa22.77■■□□□ 1.24
COL7A1-207ENST00000467985 MAP2K5Q13163 448 aa22.77■■□□□ 1.24
COL7A1-207ENST00000467985 MAP3K21Q5TCX8 1036 aa22.77■■□□□ 1.24
COL7A1-207ENST00000467985 A0A0G2JMZ2 1700 aa22.77■■□□□ 1.23
COL7A1-207ENST00000467985 RLFQ13129 1914 aa22.76■■□□□ 1.23
COL7A1-207ENST00000467985 GREB1LQ9C091 1923 aaPredicted RBP22.76■■□□□ 1.23
COL7A1-207ENST00000467985 SLC3A2P08195 630 aaKnown RBP22.76■■□□□ 1.23
COL7A1-207ENST00000467985 PTPREP23469 700 aa22.76■■□□□ 1.23
COL7A1-207ENST00000467985 ZNF444Q8N0Y2 327 aaPredicted RBP22.76■■□□□ 1.23
COL7A1-207ENST00000467985 SHCBP1Q8NEM2 672 aa22.76■■□□□ 1.23
COL7A1-207ENST00000467985 SEC62Q99442 399 aaKnown RBP22.76■■□□□ 1.23
COL7A1-207ENST00000467985 GNL3Q9BVP2 549 aaKnown RBP eCLIP22.76■■□□□ 1.23
COL7A1-207ENST00000467985 NAPBQ9H115 298 aa22.76■■□□□ 1.23
COL7A1-207ENST00000467985 STRNO43815 780 aa22.75■■□□□ 1.23
COL7A1-207ENST00000467985 PRKAR2AP13861 404 aaKnown RBP22.75■■□□□ 1.23
COL7A1-207ENST00000467985 PDE4BQ07343 736 aa22.75■■□□□ 1.23
COL7A1-207ENST00000467985 TRIM32Q13049 653 aa22.75■■□□□ 1.23
COL7A1-207ENST00000467985 SMC5Q8IY18 1101 aa22.75■■□□□ 1.23
COL7A1-207ENST00000467985 ANKLE1Q8NAG6 615 aa22.75■■□□□ 1.23
COL7A1-207ENST00000467985 SPATC1LQ9H0A9 340 aa22.75■■□□□ 1.23
COL7A1-207ENST00000467985 NYAP2Q9P242 653 aa22.75■■□□□ 1.23
COL7A1-207ENST00000467985 GRB14Q14449 540 aa22.74■■□□□ 1.23
COL7A1-207ENST00000467985 STK11IPQ8N1F8 1099 aa22.74■■□□□ 1.23
COL7A1-207ENST00000467985 MOV10L1Q9BXT6 1211 aaKnown RBP22.74■■□□□ 1.23
COL7A1-207ENST00000467985 RAD21O60216 631 aa22.73■■□□□ 1.23
COL7A1-207ENST00000467985 HOXC6P09630 235 aa22.73■■□□□ 1.23
COL7A1-207ENST00000467985 DPF3Q92784 378 aa22.73■■□□□ 1.23
COL7A1-207ENST00000467985 MROH8Q9H579 483 aa22.73■■□□□ 1.23
COL7A1-207ENST00000467985 HELLSQ9NRZ9 838 aa22.73■■□□□ 1.23
COL7A1-207ENST00000467985 SYNPO2Q9UMS6 1093 aa22.73■■□□□ 1.23
COL7A1-207ENST00000467985 CACNB2Q08289 660 aaPredicted RBP22.72■■□□□ 1.23
COL7A1-207ENST00000467985 MFSD14CQ5VZR4 134 aa22.72■■□□□ 1.23
COL7A1-207ENST00000467985 ATG4CQ96DT6 458 aa22.72■■□□□ 1.23
COL7A1-207ENST00000467985 LNPKQ9C0E8 428 aa22.72■■□□□ 1.23
COL7A1-207ENST00000467985 PARP14Q460N5 1801 aa22.71■■□□□ 1.23
COL7A1-207ENST00000467985 ZNF236Q9UL36 1845 aa22.71■■□□□ 1.23
COL7A1-207ENST00000467985 PRDM1O75626 825 aa22.71■■□□□ 1.23
COL7A1-207ENST00000467985 PPARAQ07869 468 aa22.71■■□□□ 1.23
COL7A1-207ENST00000467985 PLS1Q14651 629 aa22.71■■□□□ 1.23
COL7A1-207ENST00000467985 CCL14Q16627 93 aa22.71■■□□□ 1.23
COL7A1-207ENST00000467985 EXOC6Q8TAG9 804 aa22.71■■□□□ 1.23
COL7A1-207ENST00000467985 ADAMTS5Q9UNA0 930 aa22.71■■□□□ 1.23
COL7A1-207ENST00000467985 IGKV6D-41A0A0C4DH26 115 aa22.7■■□□□ 1.22
COL7A1-207ENST00000467985 SLC25A27O95847 323 aa22.7■■□□□ 1.22
COL7A1-207ENST00000467985 ERCC3P19447 782 aa22.7■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms