RNA–Protein interactions for RNA: ENST00000463818.1

SF3A1-205, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 583 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-205ENST00000463818 CCL14Q16627 93 aa22.63■■□□□ 1.21
SF3A1-205ENST00000463818 MAP3K21Q5TCX8 1036 aa22.63■■□□□ 1.21
SF3A1-205ENST00000463818 APPBP2Q92624 585 aa22.63■■□□□ 1.21
SF3A1-205ENST00000463818 PAWRQ96IZ0 340 aaKnown RBP22.63■■□□□ 1.21
SF3A1-205ENST00000463818 TANGO6Q9C0B7 1094 aa22.63■■□□□ 1.21
SF3A1-205ENST00000463818 DDX60LQ5H9U9 1706 aaKnown RBP22.62■■□□□ 1.21
SF3A1-205ENST00000463818 SLC15A5A6NIM6 579 aa22.62■■□□□ 1.21
SF3A1-205ENST00000463818 GSG1L2A8MUP6 293 aa22.62■■□□□ 1.21
SF3A1-205ENST00000463818 PTPREP23469 700 aa22.62■■□□□ 1.21
SF3A1-205ENST00000463818 CACNB2Q08289 660 aaPredicted RBP22.62■■□□□ 1.21
SF3A1-205ENST00000463818 SH2D4AQ9H788 454 aa22.62■■□□□ 1.21
SF3A1-205ENST00000463818 ZFYP08048 801 aaPredicted RBP22.61■■□□□ 1.21
SF3A1-205ENST00000463818 ATP2B2Q01814 1243 aa22.61■■□□□ 1.21
SF3A1-205ENST00000463818 SBK1Q52WX2 424 aa22.61■■□□□ 1.21
SF3A1-205ENST00000463818 GIMAP6Q6P9H5 292 aa22.61■■□□□ 1.21
SF3A1-205ENST00000463818 SPICE1Q8N0Z3 855 aa22.61■■□□□ 1.21
SF3A1-205ENST00000463818 NAV1Q8NEY1 1877 aa22.61■■□□□ 1.21
SF3A1-205ENST00000463818 OTUD7AQ8TE49 926 aaPredicted RBP22.61■■□□□ 1.21
SF3A1-205ENST00000463818 LPAR1Q92633 364 aa22.61■■□□□ 1.21
SF3A1-205ENST00000463818 APBA2Q99767 749 aa22.61■■□□□ 1.21
SF3A1-205ENST00000463818 VCPKMTQ9H867 229 aa22.61■■□□□ 1.21
SF3A1-205ENST00000463818 KANSL2Q9H9L4 492 aa22.61■■□□□ 1.21
SF3A1-205ENST00000463818 ARPP21Q9UBL0 812 aaPredicted RBP22.61■■□□□ 1.21
SF3A1-205ENST00000463818 NR2E3Q9Y5X4 410 aa22.61■■□□□ 1.21
SF3A1-205ENST00000463818 TTC41PQ6P2S7 1318 aa22.6■■□□□ 1.21
SF3A1-205ENST00000463818 ERC2O15083 957 aa22.6■■□□□ 1.21
SF3A1-205ENST00000463818 EEF2P13639 858 aaKnown RBP22.6■■□□□ 1.21
SF3A1-205ENST00000463818 DSG3P32926 999 aa22.6■■□□□ 1.21
SF3A1-205ENST00000463818 NECAB2Q7Z6G3 386 aa22.6■■□□□ 1.21
SF3A1-205ENST00000463818 ANKLE1Q8NAG6 615 aa22.6■■□□□ 1.21
SF3A1-205ENST00000463818 DIS3LQ8TF46 1054 aaKnown RBP22.6■■□□□ 1.21
SF3A1-205ENST00000463818 CRBNQ96SW2 442 aa22.6■■□□□ 1.21
SF3A1-205ENST00000463818 IVNS1ABPQ9Y6Y0 642 aa22.6■■□□□ 1.21
SF3A1-205ENST00000463818 MINDY4BA8MYZ0 360 aa22.59■■□□□ 1.21
SF3A1-205ENST00000463818 GPAA1O43292 621 aa22.59■■□□□ 1.21
SF3A1-205ENST00000463818 STK11IPQ8N1F8 1099 aa22.59■■□□□ 1.21
SF3A1-205ENST00000463818 PI4K2BQ8TCG2 481 aa22.59■■□□□ 1.21
SF3A1-205ENST00000463818 MOV10L1Q9BXT6 1211 aaKnown RBP22.59■■□□□ 1.21
SF3A1-205ENST00000463818 OGDHLQ9ULD0 1010 aa22.59■■□□□ 1.21
SF3A1-205ENST00000463818 M0R2C6 588 aa22.58■■□□□ 1.21
SF3A1-205ENST00000463818 EVI5O60447 810 aa22.58■■□□□ 1.21
SF3A1-205ENST00000463818 FLOT1O75955 427 aa22.58■■□□□ 1.21
SF3A1-205ENST00000463818 LRRFIP1Q32MZ4 808 aaKnown RBP22.58■■□□□ 1.21
SF3A1-205ENST00000463818 SPATC1LQ9H0A9 340 aa22.58■■□□□ 1.21
SF3A1-205ENST00000463818 MKNK2Q9HBH9 465 aa22.58■■□□□ 1.21
SF3A1-205ENST00000463818 FLRT1Q9NZU1 646 aa22.58■■□□□ 1.21
SF3A1-205ENST00000463818 PLXNB2O15031 1838 aa22.57■■□□□ 1.2
SF3A1-205ENST00000463818 APPP05067 770 aa22.57■■□□□ 1.2
SF3A1-205ENST00000463818 GNAT2P19087 354 aa22.57■■□□□ 1.2
SF3A1-205ENST00000463818 CCND3P30281 292 aaPredicted RBP22.57■■□□□ 1.2
SF3A1-205ENST00000463818 MNX1P50219 401 aaPredicted RBP22.57■■□□□ 1.2
SF3A1-205ENST00000463818 GRB14Q14449 540 aa22.57■■□□□ 1.2
SF3A1-205ENST00000463818 MFSD14CQ5VZR4 134 aa22.57■■□□□ 1.2
SF3A1-205ENST00000463818 SAMD1Q6SPF0 538 aaPredicted RBP22.57■■□□□ 1.2
SF3A1-205ENST00000463818 CHRDL2Q6WN34 429 aa22.57■■□□□ 1.2
SF3A1-205ENST00000463818 MB21D1Q8N884 522 aa22.57■■□□□ 1.2
SF3A1-205ENST00000463818 NPLOC4Q8TAT6 608 aa22.57■■□□□ 1.2
SF3A1-205ENST00000463818 ATG4CQ96DT6 458 aa22.57■■□□□ 1.2
SF3A1-205ENST00000463818 GNL3Q9BVP2 549 aaKnown RBP eCLIP22.57■■□□□ 1.2
SF3A1-205ENST00000463818 CEP290O15078 2479 aa22.56■■□□□ 1.2
SF3A1-205ENST00000463818 PATL2C9JE40 543 aaKnown RBP22.56■■□□□ 1.2
SF3A1-205ENST00000463818 WDR46O15213 610 aaKnown RBP22.56■■□□□ 1.2
SF3A1-205ENST00000463818 HOXC6P09630 235 aa22.56■■□□□ 1.2
SF3A1-205ENST00000463818 PLS1Q14651 629 aa22.56■■□□□ 1.2
SF3A1-205ENST00000463818 ANKRD45Q5TZF3 282 aa22.56■■□□□ 1.2
SF3A1-205ENST00000463818 NBPF3Q9H094 633 aa22.56■■□□□ 1.2
SF3A1-205ENST00000463818 EPB41L4AQ9HCS5 686 aaPredicted RBP22.56■■□□□ 1.2
SF3A1-205ENST00000463818 STRNO43815 780 aa22.55■■□□□ 1.2
SF3A1-205ENST00000463818 ERCC3P19447 782 aa22.55■■□□□ 1.2
SF3A1-205ENST00000463818 MX1P20591 662 aa22.55■■□□□ 1.2
SF3A1-205ENST00000463818 RASA1P20936 1047 aa22.55■■□□□ 1.2
SF3A1-205ENST00000463818 TDO2P48775 406 aa22.55■■□□□ 1.2
SF3A1-205ENST00000463818 LHX8Q68G74 356 aa22.55■■□□□ 1.2
SF3A1-205ENST00000463818 SHCBP1Q8NEM2 672 aa22.55■■□□□ 1.2
SF3A1-205ENST00000463818 YTHDC1Q96MU7 727 aaKnown RBP22.55■■□□□ 1.2
SF3A1-205ENST00000463818 SEC62Q99442 399 aaKnown RBP22.55■■□□□ 1.2
SF3A1-205ENST00000463818 FSD1Q9BTV5 496 aa22.55■■□□□ 1.2
SF3A1-205ENST00000463818 ZBTB47Q9UFB7 747 aaPredicted RBP22.55■■□□□ 1.2
SF3A1-205ENST00000463818 RAD21O60216 631 aa22.54■■□□□ 1.2
SF3A1-205ENST00000463818 DPP9Q86TI2 863 aa22.54■■□□□ 1.2
SF3A1-205ENST00000463818 IFNL3Q8IZI9 196 aa22.54■■□□□ 1.2
SF3A1-205ENST00000463818 C11orf49Q9H6J7 331 aa22.54■■□□□ 1.2
SF3A1-205ENST00000463818 GOPCQ9HD26 462 aa22.54■■□□□ 1.2
SF3A1-205ENST00000463818 BAZ2AQ9UIF9 1905 aaKnown RBP22.54■■□□□ 1.2
SF3A1-205ENST00000463818 ADORA2AP29274 412 aa22.53■■□□□ 1.2
SF3A1-205ENST00000463818 NCAPG2Q86XI2 1143 aa22.53■■□□□ 1.2
SF3A1-205ENST00000463818 MROH8Q9H579 483 aa22.53■■□□□ 1.2
SF3A1-205ENST00000463818 FBXO28Q9NVF7 368 aa22.53■■□□□ 1.2
SF3A1-205ENST00000463818 CYP2C19P33261 490 aa22.52■■□□□ 1.2
SF3A1-205ENST00000463818 FXR1P51114 621 aaKnown RBP eCLIP22.52■■□□□ 1.2
SF3A1-205ENST00000463818 TMEM132BQ14DG7 1078 aa22.52■■□□□ 1.2
SF3A1-205ENST00000463818 ZMYM1Q5SVZ6 1142 aa22.52■■□□□ 1.2
SF3A1-205ENST00000463818 ZNF444Q8N0Y2 327 aaPredicted RBP22.52■■□□□ 1.2
SF3A1-205ENST00000463818 NYAP2Q9P242 653 aa22.52■■□□□ 1.2
SF3A1-205ENST00000463818 RBM27Q9P2N5 1060 aaKnown RBP22.52■■□□□ 1.2
SF3A1-205ENST00000463818 ADAMTS5Q9UNA0 930 aa22.52■■□□□ 1.2
SF3A1-205ENST00000463818 COBLO75128 1261 aa22.51■■□□□ 1.19
SF3A1-205ENST00000463818 PRDM1O75626 825 aa22.51■■□□□ 1.19
SF3A1-205ENST00000463818 FAM83BQ5T0W9 1011 aa22.51■■□□□ 1.19
SF3A1-205ENST00000463818 NACAP1Q9BZK3 213 aa22.51■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms