RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 TSPOAP1O95153 1857 aa13.19□□□□□ -0.3
CPSF3-202ENST00000460593 ECM2O94769 699 aaPredicted RBP13.19□□□□□ -0.3
CPSF3-202ENST00000460593 COPB1P53618 953 aaKnown RBP13.19□□□□□ -0.3
CPSF3-202ENST00000460593 SAFBQ15424 915 aaKnown RBP eCLIP13.19□□□□□ -0.3
CPSF3-202ENST00000460593 CCNI2Q6ZMN8 369 aaPredicted RBP13.19□□□□□ -0.3
CPSF3-202ENST00000460593 TTC5Q8N0Z6 440 aa13.19□□□□□ -0.3
CPSF3-202ENST00000460593 SHISA4Q96DD7 197 aa13.19□□□□□ -0.3
CPSF3-202ENST00000460593 ZSWIM5Q9P217 1185 aa13.19□□□□□ -0.3
CPSF3-202ENST00000460593 PLEKHG1Q9ULL1 1385 aa13.19□□□□□ -0.3
CPSF3-202ENST00000460593 GCP02774 474 aa13.18□□□□□ -0.3
CPSF3-202ENST00000460593 CHRM1P11229 460 aaPredicted RBP13.18□□□□□ -0.3
CPSF3-202ENST00000460593 CXCR5P32302 372 aa13.18□□□□□ -0.3
CPSF3-202ENST00000460593 KLK7P49862 253 aa13.18□□□□□ -0.3
CPSF3-202ENST00000460593 ZNF174Q15697 407 aa13.18□□□□□ -0.3
CPSF3-202ENST00000460593 TSEN2Q8NCE0 465 aaKnown RBP13.18□□□□□ -0.3
CPSF3-202ENST00000460593 GDAQ9Y2T3 454 aa13.18□□□□□ -0.3
CPSF3-202ENST00000460593 C4AP0C0L4 1744 aa13.18□□□□□ -0.3
CPSF3-202ENST00000460593 C4BP0C0L5 1744 aa13.18□□□□□ -0.3
CPSF3-202ENST00000460593 H0YHG0 523 aa13.18□□□□□ -0.3
CPSF3-202ENST00000460593 SYNE4Q8N205 404 aa13.18□□□□□ -0.3
CPSF3-202ENST00000460593 SPATA20Q8TB22 786 aa13.18□□□□□ -0.3
CPSF3-202ENST00000460593 FAM107BQ9H098 131 aa13.18□□□□□ -0.3
CPSF3-202ENST00000460593 VIPAS39Q9H9C1 493 aa13.18□□□□□ -0.3
CPSF3-202ENST00000460593 NBPF26B4DH59 902 aa13.18□□□□□ -0.3
CPSF3-202ENST00000460593 H7C1W4 665 aa13.18□□□□□ -0.3
CPSF3-202ENST00000460593 MCAMP43121 646 aa13.18□□□□□ -0.3
CPSF3-202ENST00000460593 APBA1Q02410 837 aa13.18□□□□□ -0.3
CPSF3-202ENST00000460593 NBPF14Q5TI25 921 aa13.18□□□□□ -0.3
CPSF3-202ENST00000460593 NBPF10Q6P3W6 841 aaKnown RBP13.18□□□□□ -0.3
CPSF3-202ENST00000460593 KIAA1328Q86T90 577 aa13.18□□□□□ -0.3
CPSF3-202ENST00000460593 ANKRD18AQ8IVF6 992 aa13.18□□□□□ -0.3
CPSF3-202ENST00000460593 NBPF15Q8N660 670 aa13.18□□□□□ -0.3
CPSF3-202ENST00000460593 LRRC1Q9BTT6 524 aa13.18□□□□□ -0.3
CPSF3-202ENST00000460593 NLRP2Q9NX02 1062 aa13.18□□□□□ -0.3
CPSF3-202ENST00000460593 SRPRBQ9Y5M8 271 aaKnown RBP13.18□□□□□ -0.3
CPSF3-202ENST00000460593 SMIM22K7EJ46 135 aa13.17□□□□□ -0.3
CPSF3-202ENST00000460593 SHOX2O60902 331 aaPredicted RBP13.17□□□□□ -0.3
CPSF3-202ENST00000460593 SNRPA1P09661 255 aaKnown RBP13.17□□□□□ -0.3
CPSF3-202ENST00000460593 DHX37Q8IY37 1157 aaKnown RBP13.17□□□□□ -0.3
CPSF3-202ENST00000460593 TRIML1Q8N9V2 468 aa13.17□□□□□ -0.3
CPSF3-202ENST00000460593 PIH1D3Q9NQM4 214 aaKnown RBP13.17□□□□□ -0.3
CPSF3-202ENST00000460593 STRN4Q9NRL3 753 aa13.17□□□□□ -0.3
CPSF3-202ENST00000460593 KCNJ18B7U540 433 aa13.17□□□□□ -0.3
CPSF3-202ENST00000460593 EIF3HO15372 352 aaKnown RBP eCLIP13.17□□□□□ -0.3
CPSF3-202ENST00000460593 TUBB2AQ13885 445 aa13.17□□□□□ -0.3
CPSF3-202ENST00000460593 KCNJ12Q14500 433 aa13.17□□□□□ -0.3
CPSF3-202ENST00000460593 TTMPQ5BVD1 217 aa13.17□□□□□ -0.3
CPSF3-202ENST00000460593 TUBB2BQ9BVA1 445 aa13.17□□□□□ -0.3
CPSF3-202ENST00000460593 C5P01031 1676 aa13.17□□□□□ -0.3
CPSF3-202ENST00000460593 FMNL1O95466 1100 aaPredicted RBP13.16□□□□□ -0.3
CPSF3-202ENST00000460593 SWT1Q5T5J6 900 aaKnown RBP13.16□□□□□ -0.3
CPSF3-202ENST00000460593 CEP89Q96ST8 783 aa13.16□□□□□ -0.3
CPSF3-202ENST00000460593 CENPHQ9H3R5 247 aa13.16□□□□□ -0.3
CPSF3-202ENST00000460593 CWC25Q9NXE8 425 aaPredicted RBP13.16□□□□□ -0.3
CPSF3-202ENST00000460593 SHTN1A0MZ66 631 aa13.16□□□□□ -0.3
CPSF3-202ENST00000460593 NDUFAB1O14561 156 aa13.16□□□□□ -0.3
CPSF3-202ENST00000460593 ZPR1O75312 459 aa13.16□□□□□ -0.3
CPSF3-202ENST00000460593 IDEP14735 1019 aa13.16□□□□□ -0.3
CPSF3-202ENST00000460593 DNA2P51530 1060 aa13.16□□□□□ -0.3
CPSF3-202ENST00000460593 KRT26Q7Z3Y9 468 aa13.16□□□□□ -0.3
CPSF3-202ENST00000460593 PLBD2Q8NHP8 589 aa13.16□□□□□ -0.3
CPSF3-202ENST00000460593 CTAGE1Q96RT6 745 aa13.16□□□□□ -0.3
CPSF3-202ENST00000460593 OVOS2A0A0G2JMS6 1433 aa13.16□□□□□ -0.3
CPSF3-202ENST00000460593 ZNF532Q9HCE3 1301 aa13.16□□□□□ -0.3
CPSF3-202ENST00000460593 LMO7Q8WWI1 1683 aa13.16□□□□□ -0.3
CPSF3-202ENST00000460593 KRT14P02533 472 aa13.16□□□□□ -0.3
CPSF3-202ENST00000460593 GSCP56915 257 aaPredicted RBP13.16□□□□□ -0.3
CPSF3-202ENST00000460593 PPFIA1Q13136 1202 aa13.16□□□□□ -0.3
CPSF3-202ENST00000460593 TTF1Q15361 905 aaPredicted RBP13.16□□□□□ -0.3
CPSF3-202ENST00000460593 RILPL1Q5EBL4 403 aa13.16□□□□□ -0.3
CPSF3-202ENST00000460593 WDR59Q6PJI9 974 aa13.16□□□□□ -0.3
CPSF3-202ENST00000460593 NELFBQ8WX92 580 aa13.16□□□□□ -0.3
CPSF3-202ENST00000460593 AGPAT5Q9NUQ2 364 aa13.16□□□□□ -0.3
CPSF3-202ENST00000460593 XDHP47989 1333 aa13.15□□□□□ -0.3
CPSF3-202ENST00000460593 PSMD14O00487 310 aa13.15□□□□□ -0.3
CPSF3-202ENST00000460593 PRKAB2O43741 272 aa13.15□□□□□ -0.3
CPSF3-202ENST00000460593 SUFUQ9UMX1 484 aa13.15□□□□□ -0.3
CPSF3-202ENST00000460593 KDM6AO15550 1401 aaPredicted RBP13.15□□□□□ -0.3
CPSF3-202ENST00000460593 PMS1P54277 932 aaKnown RBP13.15□□□□□ -0.3
CPSF3-202ENST00000460593 GUCY1A3Q02108 690 aa13.15□□□□□ -0.3
CPSF3-202ENST00000460593 ACTN3Q08043 901 aaPredicted RBP13.15□□□□□ -0.3
CPSF3-202ENST00000460593 TCIRG1Q13488 830 aa13.15□□□□□ -0.3
CPSF3-202ENST00000460593 TCP11X2Q5H9J9 407 aa13.15□□□□□ -0.3
CPSF3-202ENST00000460593 BANK1Q8NDB2 785 aa13.15□□□□□ -0.3
CPSF3-202ENST00000460593 PLIN2Q99541 437 aa13.15□□□□□ -0.3
CPSF3-202ENST00000460593 MTRQ99707 1265 aa13.15□□□□□ -0.3
CPSF3-202ENST00000460593 AFDNP55196 1824 aaKnown RBP13.14□□□□□ -0.31
CPSF3-202ENST00000460593 ESYT3A0FGR9 886 aa13.14□□□□□ -0.31
CPSF3-202ENST00000460593 SNAP23O00161 211 aa13.14□□□□□ -0.31
CPSF3-202ENST00000460593 NKRFO15226 690 aaKnown RBP eCLIP13.14□□□□□ -0.31
CPSF3-202ENST00000460593 SCP2P22307 547 aa13.14□□□□□ -0.31
CPSF3-202ENST00000460593 SEC24CP53992 1094 aa13.14□□□□□ -0.31
CPSF3-202ENST00000460593 RTN1Q16799 776 aa13.14□□□□□ -0.31
CPSF3-202ENST00000460593 CCDC57Q2TAC2 916 aa13.14□□□□□ -0.31
CPSF3-202ENST00000460593 RNF187Q5TA31 235 aaPredicted RBP13.14□□□□□ -0.31
CPSF3-202ENST00000460593 CCDC51Q96ER9 411 aa13.14□□□□□ -0.31
CPSF3-202ENST00000460593 FAM89AQ96GI7 184 aa13.14□□□□□ -0.31
CPSF3-202ENST00000460593 GPR108Q9NPR9 543 aa13.14□□□□□ -0.31
CPSF3-202ENST00000460593 BAZ2BQ9UIF8 2168 aaKnown RBP13.14□□□□□ -0.31
CPSF3-202ENST00000460593 ZSCAN5CA6NGD5 496 aaPredicted RBP13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms