RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 APOBRQ0VD83 1088 aa6.5□□□□□ -1.37
USP40-209ENST00000452724 PAK2Q13177 524 aa6.5□□□□□ -1.37
USP40-209ENST00000452724 MLANAQ16655 118 aa6.5□□□□□ -1.37
USP40-209ENST00000452724 CWF19L2Q2TBE0 894 aaKnown RBP6.5□□□□□ -1.37
USP40-209ENST00000452724 REC114Q7Z4M0 266 aa6.5□□□□□ -1.37
USP40-209ENST00000452724 SYTL4Q96C24 671 aaPredicted RBP6.5□□□□□ -1.37
USP40-209ENST00000452724 EAF1Q96JC9 268 aaPredicted RBP6.5□□□□□ -1.37
USP40-209ENST00000452724 NT5C1AQ9BXI3 368 aa6.5□□□□□ -1.37
USP40-209ENST00000452724 UBP1Q9NZI7 540 aa6.5□□□□□ -1.37
USP40-209ENST00000452724 CREG2Q8IUH2 290 aa6.49□□□□□ -1.37
USP40-209ENST00000452724 SLFN12Q8IYM2 578 aa6.49□□□□□ -1.37
USP40-209ENST00000452724 BHLHE22Q8NFJ8 381 aaPredicted RBP6.49□□□□□ -1.37
USP40-209ENST00000452724 INPP5FQ9Y2H2 1132 aa6.49□□□□□ -1.37
USP40-209ENST00000452724 PRR36Q9H6K5 1346 aa6.49□□□□□ -1.37
USP40-209ENST00000452724 TPP2P29144 1249 aaPredicted RBP6.48□□□□□ -1.37
USP40-209ENST00000452724 JAG1P78504 1218 aa6.48□□□□□ -1.37
USP40-209ENST00000452724 SEZ6Q53EL9 994 aa6.48□□□□□ -1.37
USP40-209ENST00000452724 TTC6Q86TZ1 520 aa6.48□□□□□ -1.37
USP40-209ENST00000452724 RNF141Q8WVD5 230 aa6.48□□□□□ -1.37
USP40-209ENST00000452724 GPRASP2Q96D09 838 aa6.48□□□□□ -1.37
USP40-209ENST00000452724 CCDC74BQ96LY2 380 aa6.48□□□□□ -1.37
USP40-209ENST00000452724 PPP1R16BQ96T49 567 aa6.48□□□□□ -1.37
USP40-209ENST00000452724 GPR62Q9BZJ7 368 aa6.48□□□□□ -1.37
USP40-209ENST00000452724 REV1Q9UBZ9 1251 aa6.48□□□□□ -1.37
USP40-209ENST00000452724 KLHL3Q9UH77 587 aa6.48□□□□□ -1.37
USP40-209ENST00000452724 TMEM59LQ9UK28 342 aa6.48□□□□□ -1.37
USP40-209ENST00000452724 ZNF503-AS2A6NEH8 195 aa6.47□□□□□ -1.37
USP40-209ENST00000452724 DBX1A6NMT0 343 aa6.47□□□□□ -1.37
USP40-209ENST00000452724 HTR3BO95264 441 aa6.47□□□□□ -1.37
USP40-209ENST00000452724 GJA8P48165 433 aa6.47□□□□□ -1.37
USP40-209ENST00000452724 FYB2Q5VWT5 728 aa6.47□□□□□ -1.37
USP40-209ENST00000452724 SLITRK4Q8IW52 837 aa6.47□□□□□ -1.37
USP40-209ENST00000452724 PHACTR4Q8IZ21 702 aa6.47□□□□□ -1.37
USP40-209ENST00000452724 PPP1R13LQ8WUF5 828 aa6.47□□□□□ -1.37
USP40-209ENST00000452724 NKD1Q969G9 470 aa6.47□□□□□ -1.37
USP40-209ENST00000452724 LIN37Q96GY3 246 aaPredicted RBP6.47□□□□□ -1.37
USP40-209ENST00000452724 ASPNQ9BXN1 380 aa6.47□□□□□ -1.37
USP40-209ENST00000452724 BRMS1Q9HCU9 246 aa6.47□□□□□ -1.37
USP40-209ENST00000452724 DUSP13Q9UII6 198 aa6.47□□□□□ -1.37
USP40-209ENST00000452724 POLR3KQ9Y2Y1 108 aaPredicted RBP6.47□□□□□ -1.37
USP40-209ENST00000452724 UPK3BL1B0FP48 263 aa6.46□□□□□ -1.38
USP40-209ENST00000452724 UPK3BL2E5RIL1 263 aa6.46□□□□□ -1.38
USP40-209ENST00000452724 GRIN3BO60391 1043 aa6.46□□□□□ -1.38
USP40-209ENST00000452724 ESR1P03372 595 aa6.46□□□□□ -1.38
USP40-209ENST00000452724 ZNF124Q15973 351 aa6.46□□□□□ -1.38
USP40-209ENST00000452724 DTWD2Q8NBA8 298 aa6.46□□□□□ -1.38
USP40-209ENST00000452724 ABHD4Q8TB40 342 aa6.46□□□□□ -1.38
USP40-209ENST00000452724 SPATA32Q96LK8 384 aa6.46□□□□□ -1.38
USP40-209ENST00000452724 Q96M66 194 aa6.46□□□□□ -1.38
USP40-209ENST00000452724 KRTAP9-9Q9BYP9 154 aa6.46□□□□□ -1.38
USP40-209ENST00000452724 KRTAP9-4Q9BYQ2 154 aa6.46□□□□□ -1.38
USP40-209ENST00000452724 DUSP15Q9H1R2 295 aaPredicted RBP6.46□□□□□ -1.38
USP40-209ENST00000452724 C19orf73Q9NVV2 129 aa6.46□□□□□ -1.38
USP40-209ENST00000452724 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP6.46□□□□□ -1.38
USP40-209ENST00000452724 LTKP29376 864 aa6.45□□□□□ -1.38
USP40-209ENST00000452724 GBP1P32455 592 aa6.45□□□□□ -1.38
USP40-209ENST00000452724 MCM4P33991 863 aa6.45□□□□□ -1.38
USP40-209ENST00000452724 HK2P52789 917 aa6.45□□□□□ -1.38
USP40-209ENST00000452724 MESP2Q0VG99 397 aa6.45□□□□□ -1.38
USP40-209ENST00000452724 GNL2Q13823 731 aaKnown RBP6.45□□□□□ -1.38
USP40-209ENST00000452724 TSPYL5Q86VY4 417 aaPredicted RBP6.45□□□□□ -1.38
USP40-209ENST00000452724 RASGRP4Q8TDF6 673 aa6.45□□□□□ -1.38
USP40-209ENST00000452724 MYLIPQ8WY64 445 aa6.45□□□□□ -1.38
USP40-209ENST00000452724 DHX38Q92620 1227 aaKnown RBP6.45□□□□□ -1.38
USP40-209ENST00000452724 KREMEN1Q96MU8 473 aa6.45□□□□□ -1.38
USP40-209ENST00000452724 ASCC2Q9H1I8 757 aaPredicted RBP6.45□□□□□ -1.38
USP40-209ENST00000452724 CAPN10Q9HC96 672 aa6.45□□□□□ -1.38
USP40-209ENST00000452724 PCDHB14Q9Y5E9 798 aa6.45□□□□□ -1.38
USP40-209ENST00000452724 DNAJC25-GNG10A0A024R161 153 aa6.44□□□□□ -1.38
USP40-209ENST00000452724 SRFP11831 508 aa6.44□□□□□ -1.38
USP40-209ENST00000452724 ZNF165P49910 485 aa6.44□□□□□ -1.38
USP40-209ENST00000452724 ZC3H6P61129 1189 aaKnown RBP6.44□□□□□ -1.38
USP40-209ENST00000452724 EGR3Q06889 387 aa6.44□□□□□ -1.38
USP40-209ENST00000452724 CLEC16AQ2KHT3 1053 aa6.44□□□□□ -1.38
USP40-209ENST00000452724 GAB4Q2WGN9 574 aa6.44□□□□□ -1.38
USP40-209ENST00000452724 RALGPS1Q5JS13 557 aa6.44□□□□□ -1.38
USP40-209ENST00000452724 REXO1Q8N1G1 1221 aaKnown RBP6.44□□□□□ -1.38
USP40-209ENST00000452724 TINF2Q9BSI4 451 aa6.44□□□□□ -1.38
USP40-209ENST00000452724 CHURC1-FNTBB4DL54 471 aa6.43□□□□□ -1.38
USP40-209ENST00000452724 IQCJ-SCHIP1C9J366 451 aaPredicted RBP6.43□□□□□ -1.38
USP40-209ENST00000452724 RAP1GAPP47736 663 aa6.43□□□□□ -1.38
USP40-209ENST00000452724 RNF4P78317 190 aa6.43□□□□□ -1.38
USP40-209ENST00000452724 COL9A2Q14055 689 aaPredicted RBP6.43□□□□□ -1.38
USP40-209ENST00000452724 GK5Q6ZS86 529 aa6.43□□□□□ -1.38
USP40-209ENST00000452724 OXR1Q8N573 874 aa6.43□□□□□ -1.38
USP40-209ENST00000452724 FBXO15Q8NCQ5 510 aaPredicted RBP6.43□□□□□ -1.38
USP40-209ENST00000452724 BAHD1Q8TBE0 780 aaPredicted RBP6.43□□□□□ -1.38
USP40-209ENST00000452724 EHMT1Q9H9B1 1298 aa6.43□□□□□ -1.38
USP40-209ENST00000452724 GINM1Q9NU53 330 aa6.43□□□□□ -1.38
USP40-209ENST00000452724 EFR3BQ9Y2G0 817 aa6.43□□□□□ -1.38
USP40-209ENST00000452724 ATE1O95260 518 aa6.42□□□□□ -1.38
USP40-209ENST00000452724 HPXP02790 462 aa6.42□□□□□ -1.38
USP40-209ENST00000452724 RAG1P15918 1043 aa6.42□□□□□ -1.38
USP40-209ENST00000452724 SOX9P48436 509 aa6.42□□□□□ -1.38
USP40-209ENST00000452724 CLCQ05315 142 aa6.42□□□□□ -1.38
USP40-209ENST00000452724 PRR23BQ6ZRT6 265 aa6.42□□□□□ -1.38
USP40-209ENST00000452724 SYDE1Q6ZW31 735 aaPredicted RBP6.42□□□□□ -1.38
USP40-209ENST00000452724 LILRA2Q8N149 483 aa6.42□□□□□ -1.38
USP40-209ENST00000452724 PDZD8Q8NEN9 1154 aa6.42□□□□□ -1.38
USP40-209ENST00000452724 TOX2Q96NM4 488 aa6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms