RNA–Protein interactions for RNA: ENST00000449264.2

TNF-208, Transcript of tumor necrosis factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TNF, Length 1,676 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNF-208ENST00000449264 PHIPQ8WWQ0 1821 aa17.08■□□□□ 0.32
TNF-208ENST00000449264 CSADQ9Y600 493 aa17.08■□□□□ 0.32
TNF-208ENST00000449264 CALM1P0DP23 149 aa17.07■□□□□ 0.32
TNF-208ENST00000449264 CALM2P0DP24 149 aa17.07■□□□□ 0.32
TNF-208ENST00000449264 CALM3P0DP25 149 aa17.07■□□□□ 0.32
TNF-208ENST00000449264 ECE1P42892 770 aa17.07■□□□□ 0.32
TNF-208ENST00000449264 MAP3K9P80192 1104 aa17.07■□□□□ 0.32
TNF-208ENST00000449264 ARMC9Q7Z3E5 817 aa17.07■□□□□ 0.32
TNF-208ENST00000449264 SIAH1Q8IUQ4 282 aa17.07■□□□□ 0.32
TNF-208ENST00000449264 CTCFLQ8NI51 663 aaPredicted RBP17.07■□□□□ 0.32
TNF-208ENST00000449264 ACER1Q8TDN7 264 aa17.07■□□□□ 0.32
TNF-208ENST00000449264 FEZ1Q99689 392 aa17.07■□□□□ 0.32
TNF-208ENST00000449264 GINM1Q9NU53 330 aa17.07■□□□□ 0.32
TNF-208ENST00000449264 NID2Q14112 1375 aa17.07■□□□□ 0.32
TNF-208ENST00000449264 A0A1W2PRG0 241 aa17.07■□□□□ 0.32
TNF-208ENST00000449264 USP17L5A8MUK1 530 aa17.07■□□□□ 0.32
TNF-208ENST00000449264 KIF3CO14782 793 aa17.07■□□□□ 0.32
TNF-208ENST00000449264 CPLX1O14810 134 aa17.07■□□□□ 0.32
TNF-208ENST00000449264 PPFIA3O75145 1194 aa17.07■□□□□ 0.32
TNF-208ENST00000449264 CELF2O95319 508 aaKnown RBP17.07■□□□□ 0.32
TNF-208ENST00000449264 YY1P25490 414 aa17.07■□□□□ 0.32
TNF-208ENST00000449264 CDC27P30260 824 aa17.07■□□□□ 0.32
TNF-208ENST00000449264 RCAN1P53805 252 aa17.07■□□□□ 0.32
TNF-208ENST00000449264 ZYXQ15942 572 aaKnown RBP17.07■□□□□ 0.32
TNF-208ENST00000449264 NOL9Q5SY16 702 aaKnown RBP17.07■□□□□ 0.32
TNF-208ENST00000449264 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.07■□□□□ 0.32
TNF-208ENST00000449264 FANCBQ8NB91 859 aa17.07■□□□□ 0.32
TNF-208ENST00000449264 ISY1Q9ULR0 285 aaKnown RBP17.07■□□□□ 0.32
TNF-208ENST00000449264 PTPRAP18433 802 aa17.06■□□□□ 0.32
TNF-208ENST00000449264 ADD1P35611 737 aaKnown RBP17.06■□□□□ 0.32
TNF-208ENST00000449264 MKL1Q969V6 931 aa17.06■□□□□ 0.32
TNF-208ENST00000449264 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.06■□□□□ 0.32
TNF-208ENST00000449264 SNCAIPQ9Y6H5 919 aa17.06■□□□□ 0.32
TNF-208ENST00000449264 MYH6P13533 1939 aa17.06■□□□□ 0.32
TNF-208ENST00000449264 BAZ2BQ9UIF8 2168 aaKnown RBP17.05■□□□□ 0.32
TNF-208ENST00000449264 DHX16O60231 1041 aaKnown RBP17.05■□□□□ 0.32
TNF-208ENST00000449264 GRM4Q14833 912 aa17.05■□□□□ 0.32
TNF-208ENST00000449264 ANKRD13AQ8IZ07 590 aa17.05■□□□□ 0.32
TNF-208ENST00000449264 CMTR1Q8N1G2 835 aaKnown RBP17.05■□□□□ 0.32
TNF-208ENST00000449264 CLMNQ96JQ2 1002 aa17.05■□□□□ 0.32
TNF-208ENST00000449264 SH2D4AQ9H788 454 aa17.05■□□□□ 0.32
TNF-208ENST00000449264 ELP3Q9H9T3 547 aa17.05■□□□□ 0.32
TNF-208ENST00000449264 FRMPD2Q68DX3 1309 aaPredicted RBP17.04■□□□□ 0.32
TNF-208ENST00000449264 CCDC196A0A1B0GTZ2 297 aa17.04■□□□□ 0.32
TNF-208ENST00000449264 UBE2Q2LH0YL09 131 aa17.04■□□□□ 0.32
TNF-208ENST00000449264 JAK2O60674 1132 aa17.04■□□□□ 0.32
TNF-208ENST00000449264 ITGBL1O95965 494 aaPredicted RBP17.04■□□□□ 0.32
TNF-208ENST00000449264 PARP1P09874 1014 aaKnown RBP17.04■□□□□ 0.32
TNF-208ENST00000449264 GOLGA8HP0CJ92 632 aa17.04■□□□□ 0.32
TNF-208ENST00000449264 PDHBP11177 359 aa17.04■□□□□ 0.32
TNF-208ENST00000449264 KIF5BP33176 963 aa17.04■□□□□ 0.32
TNF-208ENST00000449264 CCDC96Q2M329 555 aa17.04■□□□□ 0.32
TNF-208ENST00000449264 USP17L2Q6R6M4 530 aa17.04■□□□□ 0.32
TNF-208ENST00000449264 SPICE1Q8N0Z3 855 aa17.04■□□□□ 0.32
TNF-208ENST00000449264 AS3MTQ9HBK9 375 aa17.04■□□□□ 0.32
TNF-208ENST00000449264 GBA2Q9HCG7 927 aaPredicted RBP17.04■□□□□ 0.32
TNF-208ENST00000449264 FAM217BQ9NTX9 383 aaPredicted RBP17.04■□□□□ 0.32
TNF-208ENST00000449264 RBM28Q9NW13 759 aaKnown RBP17.04■□□□□ 0.32
TNF-208ENST00000449264 SMC3Q9UQE7 1217 aa17.04■□□□□ 0.32
TNF-208ENST00000449264 TMX2Q9Y320 296 aa17.04■□□□□ 0.32
TNF-208ENST00000449264 ZHX2Q9Y6X8 837 aa17.04■□□□□ 0.32
TNF-208ENST00000449264 PTPDC1A2A3K4 754 aa17.04■□□□□ 0.32
TNF-208ENST00000449264 PLEKHA8P1O95397 391 aa17.04■□□□□ 0.32
TNF-208ENST00000449264 CTDNEP1O95476 244 aa17.04■□□□□ 0.32
TNF-208ENST00000449264 MAP3K11Q16584 847 aa17.04■□□□□ 0.32
TNF-208ENST00000449264 SLFN13Q68D06 897 aa17.04■□□□□ 0.32
TNF-208ENST00000449264 CPLX2Q6PUV4 134 aaKnown RBP17.04■□□□□ 0.32
TNF-208ENST00000449264 STAG2Q8N3U4 1231 aa17.04■□□□□ 0.32
TNF-208ENST00000449264 CCDC82Q8N4S0 544 aa17.04■□□□□ 0.32
TNF-208ENST00000449264 NSUN7Q8NE18 718 aaKnown RBP17.04■□□□□ 0.32
TNF-208ENST00000449264 DDX11Q96FC9 970 aa17.04■□□□□ 0.32
TNF-208ENST00000449264 INTS4Q96HW7 963 aaKnown RBP17.04■□□□□ 0.32
TNF-208ENST00000449264 GOPCQ9HD26 462 aa17.04■□□□□ 0.32
TNF-208ENST00000449264 MAD2L2Q9UI95 211 aa17.04■□□□□ 0.32
TNF-208ENST00000449264 TRIM75PA6NK02 468 aa17.03■□□□□ 0.32
TNF-208ENST00000449264 F5H6K3 240 aa17.03■□□□□ 0.32
TNF-208ENST00000449264 NDUFB10O96000 172 aa17.03■□□□□ 0.32
TNF-208ENST00000449264 KLRC3Q07444 240 aa17.03■□□□□ 0.32
TNF-208ENST00000449264 SPP2Q13103 211 aa17.03■□□□□ 0.32
TNF-208ENST00000449264 MTMR2Q13614 643 aa17.03■□□□□ 0.32
TNF-208ENST00000449264 GMCL1P1Q8NEA9 526 aa17.03■□□□□ 0.32
TNF-208ENST00000449264 CNKSR2Q8WXI2 1034 aa17.03■□□□□ 0.32
TNF-208ENST00000449264 PHKBQ93100 1093 aa17.03■□□□□ 0.32
TNF-208ENST00000449264 PTPRFP10586 1907 aa17.03■□□□□ 0.32
TNF-208ENST00000449264 CDKL5O76039 1030 aa17.02■□□□□ 0.32
TNF-208ENST00000449264 SLC1A4P43007 532 aa17.02■□□□□ 0.32
TNF-208ENST00000449264 PPP2R5BQ15173 497 aa17.02■□□□□ 0.32
TNF-208ENST00000449264 TMTC3Q6ZXV5 915 aa17.02■□□□□ 0.32
TNF-208ENST00000449264 KCTD1Q719H9 257 aa17.02■□□□□ 0.32
TNF-208ENST00000449264 C2orf69Q8N8R5 385 aa17.02■□□□□ 0.32
TNF-208ENST00000449264 ZNF280CQ8ND82 737 aa17.02■□□□□ 0.32
TNF-208ENST00000449264 SMC1BQ8NDV3 1235 aa17.02■□□□□ 0.32
TNF-208ENST00000449264 MAP3K14Q99558 947 aa17.02■□□□□ 0.32
TNF-208ENST00000449264 NUP88Q99567 741 aaPredicted RBP17.02■□□□□ 0.32
TNF-208ENST00000449264 LLPHQ9BRT6 129 aaKnown RBP17.02■□□□□ 0.32
TNF-208ENST00000449264 VCPKMTQ9H867 229 aa17.02■□□□□ 0.32
TNF-208ENST00000449264 GPCPD1Q9NPB8 672 aa17.02■□□□□ 0.32
TNF-208ENST00000449264 SYNPO2Q9UMS6 1093 aa17.02■□□□□ 0.32
TNF-208ENST00000449264 USP17L10C9JJH3 530 aa17.01■□□□□ 0.31
TNF-208ENST00000449264 SNHG28P0DPA3 235 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms