RNA–Protein interactions for RNA: ENST00000449058.6

TOM1-210, Transcript of target of myb1 membrane trafficking protein, human

APPRIS P3 TSL 1 (best) BASIC

Gene TOM1, Length 2,389 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TOM1-210	ENST00000449058	ZNF397	Q8NF99	534 aa	Predicted RBP	19.29	■□□□□ 0.68
TOM1-210	ENST00000449058	SRP68	Q9UHB9	627 aa	Known RBP	19.29	■□□□□ 0.68
TOM1-210	ENST00000449058	SPDYE4	A6NLX3	237 aa		19.28	■□□□□ 0.68
TOM1-210	ENST00000449058	NBPF5P	Q86XG9	351 aa	Predicted RBP	19.28	■□□□□ 0.68
TOM1-210	ENST00000449058	HOMER1	Q86YM7	354 aa		19.28	■□□□□ 0.68
TOM1-210	ENST00000449058	GSDMA	Q96QA5	445 aa		19.28	■□□□□ 0.68
TOM1-210	ENST00000449058	NOL12	Q9UGY1	213 aa	Known RBP eCLIP	19.28	■□□□□ 0.68
TOM1-210	ENST00000449058		V9GYY5	206 aa	Predicted RBP	19.28	■□□□□ 0.68
TOM1-210	ENST00000449058		A0A1B0GTH6	734 aa		19.28	■□□□□ 0.68
TOM1-210	ENST00000449058	STX10	O60499	249 aa		19.28	■□□□□ 0.68
TOM1-210	ENST00000449058	AFM	P43652	599 aa		19.28	■□□□□ 0.68
TOM1-210	ENST00000449058	TRAPPC10	P48553	1259 aa		19.28	■□□□□ 0.68
TOM1-210	ENST00000449058	PFKFB3	Q16875	520 aa	Predicted RBP	19.28	■□□□□ 0.68
TOM1-210	ENST00000449058	FAM98C	Q17RN3	349 aa	Known RBP	19.28	■□□□□ 0.68
TOM1-210	ENST00000449058	RCSD1	Q6JBY9	416 aa		19.28	■□□□□ 0.68
TOM1-210	ENST00000449058	APTX	Q7Z2E3	356 aa	Known RBP	19.28	■□□□□ 0.68
TOM1-210	ENST00000449058	BAG1	Q99933	345 aa	Predicted RBP	19.28	■□□□□ 0.68
TOM1-210	ENST00000449058	OGFR	Q9NZT2	677 aa		19.28	■□□□□ 0.68
TOM1-210	ENST00000449058	SBF2	Q86WG5	1849 aa		19.28	■□□□□ 0.68
TOM1-210	ENST00000449058	ZSCAN12	O43309	604 aa		19.27	■□□□□ 0.68
TOM1-210	ENST00000449058	CD44	P16070	742 aa	Known RBP	19.27	■□□□□ 0.68
TOM1-210	ENST00000449058	TM4SF1	P30408	202 aa		19.27	■□□□□ 0.68
TOM1-210	ENST00000449058	PTGDR	Q13258	359 aa		19.27	■□□□□ 0.68
TOM1-210	ENST00000449058	ELF2	Q15723	593 aa		19.27	■□□□□ 0.68
TOM1-210	ENST00000449058	SPATA1	Q5VX52	437 aa		19.27	■□□□□ 0.68
TOM1-210	ENST00000449058	BTAF1	O14981	1849 aa		19.27	■□□□□ 0.68
TOM1-210	ENST00000449058	KMT5B	Q4FZB7	885 aa		19.27	■□□□□ 0.67
TOM1-210	ENST00000449058	TXNRD3	Q86VQ6	643 aa		19.27	■□□□□ 0.67
TOM1-210	ENST00000449058	BCL11B	Q9C0K0	894 aa	Predicted RBP	19.27	■□□□□ 0.67
TOM1-210	ENST00000449058	DDX41	Q9UJV9	622 aa	Known RBP	19.27	■□□□□ 0.67
TOM1-210	ENST00000449058	PPP2R2C	Q9Y2T4	447 aa		19.27	■□□□□ 0.67
TOM1-210	ENST00000449058	UCHL5	Q9Y5K5	329 aa	Known RBP eCLIP	19.27	■□□□□ 0.67
TOM1-210	ENST00000449058	BAZ2B	Q9UIF8	2168 aa	Known RBP	19.26	■□□□□ 0.67
TOM1-210	ENST00000449058	PTF1A	Q7RTS3	328 aa		19.26	■□□□□ 0.67
TOM1-210	ENST00000449058	DNAI1	Q9UI46	699 aa		19.26	■□□□□ 0.67
TOM1-210	ENST00000449058	TNRC6C	Q9HCJ0	1690 aa	Known RBP	19.26	■□□□□ 0.67
TOM1-210	ENST00000449058	VWA3A	A6NCI4	1184 aa		19.26	■□□□□ 0.67
TOM1-210	ENST00000449058	NLRP5	P59047	1200 aa		19.26	■□□□□ 0.67
TOM1-210	ENST00000449058	E2F4	Q16254	413 aa		19.26	■□□□□ 0.67
TOM1-210	ENST00000449058	CDKAL1	Q5VV42	579 aa		19.26	■□□□□ 0.67
TOM1-210	ENST00000449058	TPTE2	Q6XPS3	522 aa		19.26	■□□□□ 0.67
TOM1-210	ENST00000449058	MKRN1	Q9UHC7	482 aa	Known RBP	19.26	■□□□□ 0.67
TOM1-210	ENST00000449058	SYNRG	Q9UMZ2	1314 aa		19.25	■□□□□ 0.67
TOM1-210	ENST00000449058	TSPY2	A6NKD2	308 aa		19.25	■□□□□ 0.67
TOM1-210	ENST00000449058	FANCG	O15287	622 aa		19.25	■□□□□ 0.67
TOM1-210	ENST00000449058	CASP1	P29466	404 aa		19.25	■□□□□ 0.67
TOM1-210	ENST00000449058	NT5C2	P49902	561 aa		19.25	■□□□□ 0.67
TOM1-210	ENST00000449058	SPTY2D1	Q68D10	685 aa	Predicted RBP	19.25	■□□□□ 0.67
TOM1-210	ENST00000449058	PPP1R3G	B7ZBB8	358 aa		19.25	■□□□□ 0.67
TOM1-210	ENST00000449058	VEGFA	P15692	232 aa	Predicted RBP	19.25	■□□□□ 0.67
TOM1-210	ENST00000449058	ZSCAN20	P17040	1043 aa	Predicted RBP	19.25	■□□□□ 0.67
TOM1-210	ENST00000449058	KIF5B	P33176	963 aa		19.25	■□□□□ 0.67
TOM1-210	ENST00000449058	PIK3AP1	Q6ZUJ8	805 aa		19.25	■□□□□ 0.67
TOM1-210	ENST00000449058	XDH	P47989	1333 aa		19.24	■□□□□ 0.67
TOM1-210	ENST00000449058	ADAMTS3	O15072	1205 aa		19.24	■□□□□ 0.67
TOM1-210	ENST00000449058	IGSF3	O75054	1194 aa		19.24	■□□□□ 0.67
TOM1-210	ENST00000449058	ZPR1	O75312	459 aa		19.24	■□□□□ 0.67
TOM1-210	ENST00000449058	ADK	P55263	362 aa	Known RBP	19.24	■□□□□ 0.67
TOM1-210	ENST00000449058	FBXO38	Q6PIJ6	1188 aa		19.24	■□□□□ 0.67
TOM1-210	ENST00000449058	LRRN4CL	Q8ND94	238 aa		19.24	■□□□□ 0.67
TOM1-210	ENST00000449058	ANKS1A	Q92625	1134 aa		19.24	■□□□□ 0.67
TOM1-210	ENST00000449058	GOLGA6L9	A6NEM1	432 aa		19.24	■□□□□ 0.67
TOM1-210	ENST00000449058	USP17L8	P0C7I0	530 aa		19.24	■□□□□ 0.67
TOM1-210	ENST00000449058	IL17A	Q16552	155 aa		19.24	■□□□□ 0.67
TOM1-210	ENST00000449058	C12orf60	Q5U649	245 aa		19.24	■□□□□ 0.67
TOM1-210	ENST00000449058	DZIP1	Q86YF9	867 aa	Known RBP	19.24	■□□□□ 0.67
TOM1-210	ENST00000449058	PRDM10	Q9NQV6	1147 aa		19.24	■□□□□ 0.67
TOM1-210	ENST00000449058	MCM9	Q9NXL9	1143 aa		19.24	■□□□□ 0.67
TOM1-210	ENST00000449058	ROBO3	Q96MS0	1386 aa		19.23	■□□□□ 0.67
TOM1-210	ENST00000449058	GNPAT	O15228	680 aa		19.23	■□□□□ 0.67
TOM1-210	ENST00000449058	PBX1	P40424	430 aa		19.23	■□□□□ 0.67
TOM1-210	ENST00000449058	PDXDC2P	Q6P474	469 aa		19.23	■□□□□ 0.67
TOM1-210	ENST00000449058	DGKH	Q86XP1	1220 aa		19.23	■□□□□ 0.67
TOM1-210	ENST00000449058	CCDC24	Q8N4L8	307 aa		19.23	■□□□□ 0.67
TOM1-210	ENST00000449058	IQUB	Q8NA54	791 aa		19.23	■□□□□ 0.67
TOM1-210	ENST00000449058	PYM1	Q9BRP8	204 aa	Known RBP	19.23	■□□□□ 0.67
TOM1-210	ENST00000449058	SH3GLB2	Q9NR46	395 aa		19.23	■□□□□ 0.67
TOM1-210	ENST00000449058	CALML3	P27482	149 aa		19.22	■□□□□ 0.67
TOM1-210	ENST00000449058	KLHL10	Q6JEL2	608 aa		19.22	■□□□□ 0.67
TOM1-210	ENST00000449058	IL17RB	Q9NRM6	502 aa		19.22	■□□□□ 0.67
TOM1-210	ENST00000449058	ADD3	Q9UEY8	706 aa	Known RBP	19.22	■□□□□ 0.67
TOM1-210	ENST00000449058	TAF1L	Q8IZX4	1826 aa		19.22	■□□□□ 0.67
TOM1-210	ENST00000449058	TEX33	O43247	280 aa		19.22	■□□□□ 0.67
TOM1-210	ENST00000449058	ERCC6L	Q2NKX8	1250 aa		19.22	■□□□□ 0.67
TOM1-210	ENST00000449058	ARL6IP4	Q66PJ3	421 aa	Known RBP	19.22	■□□□□ 0.67
TOM1-210	ENST00000449058	TOGARAM2	Q6ZUX3	1019 aa		19.22	■□□□□ 0.67
TOM1-210	ENST00000449058	PANX2	Q96RD6	677 aa		19.22	■□□□□ 0.67
TOM1-210	ENST00000449058	KAT14	Q9H8E8	782 aa		19.22	■□□□□ 0.67
TOM1-210	ENST00000449058	NHS	Q6T4R5	1651 aa		19.22	■□□□□ 0.67
TOM1-210	ENST00000449058	H2AFX	P16104	143 aa	Predicted RBP	19.21	■□□□□ 0.67
TOM1-210	ENST00000449058	MCM7	P33993	719 aa		19.21	■□□□□ 0.67
TOM1-210	ENST00000449058	STX17	P56962	302 aa		19.21	■□□□□ 0.67
TOM1-210	ENST00000449058	TFAP4	Q01664	338 aa		19.21	■□□□□ 0.67
TOM1-210	ENST00000449058	VPS72	Q15906	364 aa		19.21	■□□□□ 0.67
TOM1-210	ENST00000449058	C4orf32	Q8N8J7	132 aa		19.21	■□□□□ 0.67
TOM1-210	ENST00000449058	SRRT	Q9BXP5	876 aa	Known RBP	19.21	■□□□□ 0.67
TOM1-210	ENST00000449058	JAG2	Q9Y219	1238 aa		19.21	■□□□□ 0.67
TOM1-210	ENST00000449058	PARP3	Q9Y6F1	533 aa		19.21	■□□□□ 0.67
TOM1-210	ENST00000449058	NAV1	Q8NEY1	1877 aa		19.21	■□□□□ 0.67
TOM1-210	ENST00000449058	SMYD4	Q8IYR2	804 aa	Predicted RBP	19.21	■□□□□ 0.67

Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms