RNA–Protein interactions for RNA: ENST00000448238.2

NIPBL-202, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 1 (best) BASIC

Gene NIPBL, Length 8,729 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-202ENST00000448238 HOXA7P31268 230 aaPredicted RBP9.81□□□□□ -0.84
NIPBL-202ENST00000448238 NR5A1Q13285 461 aa9.81□□□□□ -0.84
NIPBL-202ENST00000448238 FCHSD1Q86WN1 690 aa9.81□□□□□ -0.84
NIPBL-202ENST00000448238 CAPS2Q9BXY5 557 aa9.81□□□□□ -0.84
NIPBL-202ENST00000448238 WARS2Q9UGM6 360 aaKnown RBP9.81□□□□□ -0.84
NIPBL-202ENST00000448238 PRG3Q9Y2Y8 225 aaPredicted RBP9.81□□□□□ -0.84
NIPBL-202ENST00000448238 ANKRD30BQ9BXX2 1392 aa9.81□□□□□ -0.84
NIPBL-202ENST00000448238 GIMAP6Q6P9H5 292 aa9.8□□□□□ -0.84
NIPBL-202ENST00000448238 BTN2A1Q7KYR7 527 aa9.8□□□□□ -0.84
NIPBL-202ENST00000448238 STX8Q9UNK0 236 aa9.8□□□□□ -0.84
NIPBL-202ENST00000448238 A0A1B0GVL5 298 aa9.8□□□□□ -0.84
NIPBL-202ENST00000448238 ZBTB43O43298 467 aa9.8□□□□□ -0.84
NIPBL-202ENST00000448238 THAP12O43422 761 aa9.8□□□□□ -0.84
NIPBL-202ENST00000448238 ZSCAN22P10073 491 aaPredicted RBP9.8□□□□□ -0.84
NIPBL-202ENST00000448238 ECE1P42892 770 aa9.8□□□□□ -0.84
NIPBL-202ENST00000448238 KIF23Q02241 960 aaPredicted RBP9.8□□□□□ -0.84
NIPBL-202ENST00000448238 ASIC2Q16515 512 aa9.8□□□□□ -0.84
NIPBL-202ENST00000448238 NCAPH2Q6IBW4 605 aa9.8□□□□□ -0.84
NIPBL-202ENST00000448238 TRMT10CQ7L0Y3 403 aaKnown RBP9.8□□□□□ -0.84
NIPBL-202ENST00000448238 PEX26Q7Z412 305 aa9.8□□□□□ -0.84
NIPBL-202ENST00000448238 HORMAD1Q86X24 394 aa9.8□□□□□ -0.84
NIPBL-202ENST00000448238 RNF169Q8NCN4 708 aa9.8□□□□□ -0.84
NIPBL-202ENST00000448238 FLCNQ8NFG4 579 aa9.8□□□□□ -0.84
NIPBL-202ENST00000448238 N4BP2L2Q92802 583 aaPredicted RBP9.8□□□□□ -0.84
NIPBL-202ENST00000448238 EPAS1Q99814 870 aa9.8□□□□□ -0.84
NIPBL-202ENST00000448238 KIF9Q9HAQ2 790 aa9.8□□□□□ -0.84
NIPBL-202ENST00000448238 VAT1LQ9HCJ6 419 aa9.8□□□□□ -0.84
NIPBL-202ENST00000448238 DEFA1P59665 94 aa9.8□□□□□ -0.84
NIPBL-202ENST00000448238 DEFA3P59666 94 aa9.8□□□□□ -0.84
NIPBL-202ENST00000448238 RPS6KA1Q15418 735 aa9.8□□□□□ -0.84
NIPBL-202ENST00000448238 CCDC84Q86UT8 332 aaPredicted RBP9.8□□□□□ -0.84
NIPBL-202ENST00000448238 MGARPQ8TDB4 240 aa9.8□□□□□ -0.84
NIPBL-202ENST00000448238 PGBD1Q96JS3 809 aa9.8□□□□□ -0.84
NIPBL-202ENST00000448238 TMED10P49755 219 aaKnown RBP9.8□□□□□ -0.84
NIPBL-202ENST00000448238 PRPSAP1Q14558 356 aa9.8□□□□□ -0.84
NIPBL-202ENST00000448238 CCDC197Q8NCU1 140 aa9.8□□□□□ -0.84
NIPBL-202ENST00000448238 CAB39Q9Y376 341 aaPredicted RBP9.8□□□□□ -0.84
NIPBL-202ENST00000448238 TSPY3P0CV98 308 aa9.8□□□□□ -0.84
NIPBL-202ENST00000448238 TSPY8P0CW00 308 aa9.8□□□□□ -0.84
NIPBL-202ENST00000448238 TRAF7Q6Q0C0 670 aa9.8□□□□□ -0.84
NIPBL-202ENST00000448238 TBRG4Q969Z0 631 aaKnown RBP eCLIP9.8□□□□□ -0.842e-6■■■■■ 54.9
NIPBL-202ENST00000448238 OLA1Q9NTK5 396 aaKnown RBP9.8□□□□□ -0.84
NIPBL-202ENST00000448238 LZTS3O60299 673 aaPredicted RBP9.8□□□□□ -0.84
NIPBL-202ENST00000448238 RPSAP08865 295 aaKnown RBP9.8□□□□□ -0.84
NIPBL-202ENST00000448238 SRGAP2BP0DMP2 458 aa9.8□□□□□ -0.84
NIPBL-202ENST00000448238 RTN1Q16799 776 aa9.8□□□□□ -0.84
NIPBL-202ENST00000448238 FSCBQ5H9T9 825 aa9.8□□□□□ -0.84
NIPBL-202ENST00000448238 SECISBP2LQ93073 1101 aaKnown RBP9.8□□□□□ -0.84
NIPBL-202ENST00000448238 GEMIN8Q9NWZ8 242 aaKnown RBP9.8□□□□□ -0.84
NIPBL-202ENST00000448238 BTBD11A6QL63 1104 aa9.8□□□□□ -0.84
NIPBL-202ENST00000448238 BCAR3O75815 825 aa9.8□□□□□ -0.84
NIPBL-202ENST00000448238 TSC22D4Q9Y3Q8 395 aa9.8□□□□□ -0.84
NIPBL-202ENST00000448238 DDX5P17844 614 aaKnown RBP9.79□□□□□ -0.84
NIPBL-202ENST00000448238 SMC5Q8IY18 1101 aa9.79□□□□□ -0.84
NIPBL-202ENST00000448238 TMC2Q8TDI7 906 aa9.79□□□□□ -0.84
NIPBL-202ENST00000448238 WDR47O94967 919 aa9.79□□□□□ -0.84
NIPBL-202ENST00000448238 GUCY1A3Q02108 690 aa9.79□□□□□ -0.84
NIPBL-202ENST00000448238 HELLSQ9NRZ9 838 aa9.79□□□□□ -0.84
NIPBL-202ENST00000448238 TYW5A2RUC4 315 aaKnown RBP9.79□□□□□ -0.84
NIPBL-202ENST00000448238 NFKBIAP25963 317 aa9.79□□□□□ -0.84
NIPBL-202ENST00000448238 OAS2P29728 719 aaKnown RBP9.79□□□□□ -0.84
NIPBL-202ENST00000448238 TYRO3Q06418 890 aa9.79□□□□□ -0.84
NIPBL-202ENST00000448238 GLT8D2Q9H1C3 349 aa9.79□□□□□ -0.84
NIPBL-202ENST00000448238 TRPC6Q9Y210 931 aa9.79□□□□□ -0.84
NIPBL-202ENST00000448238 MEIS1O00470 390 aa9.79□□□□□ -0.84
NIPBL-202ENST00000448238 HNRNPRO43390 633 aaKnown RBP9.79□□□□□ -0.84
NIPBL-202ENST00000448238 HSPA6P17066 643 aa9.79□□□□□ -0.84
NIPBL-202ENST00000448238 S100A5P33763 92 aa9.79□□□□□ -0.84
NIPBL-202ENST00000448238 KRR1Q13601 381 aaKnown RBP9.79□□□□□ -0.84
NIPBL-202ENST00000448238 BCAS4Q8TDM0 211 aa9.79□□□□□ -0.84
NIPBL-202ENST00000448238 SNTNA6NMZ2 147 aa9.79□□□□□ -0.84
NIPBL-202ENST00000448238 NUP62P37198 522 aaPredicted RBP9.79□□□□□ -0.84
NIPBL-202ENST00000448238 EXOSC9Q06265 439 aaKnown RBP9.79□□□□□ -0.84
NIPBL-202ENST00000448238 CDC5LQ99459 802 aaKnown RBP9.79□□□□□ -0.84
NIPBL-202ENST00000448238 MIS18AQ9NYP9 233 aa9.79□□□□□ -0.84
NIPBL-202ENST00000448238 HEXIM1O94992 359 aaKnown RBP9.78□□□□□ -0.84
NIPBL-202ENST00000448238 CHEK2O96017 543 aa9.78□□□□□ -0.84
NIPBL-202ENST00000448238 STRN3Q13033 797 aa9.78□□□□□ -0.84
NIPBL-202ENST00000448238 NBPF9Q3BBW0 867 aa9.78□□□□□ -0.84
NIPBL-202ENST00000448238 TRIM50Q86XT4 487 aa9.78□□□□□ -0.84
NIPBL-202ENST00000448238 MID2Q9UJV3 735 aa9.78□□□□□ -0.84
NIPBL-202ENST00000448238 KLHL29Q96CT2 875 aa9.78□□□□□ -0.84
NIPBL-202ENST00000448238 GNL1P36915 607 aaPredicted RBP9.78□□□□□ -0.84
NIPBL-202ENST00000448238 TBC1D8BQ0IIM8 1120 aa9.78□□□□□ -0.84
NIPBL-202ENST00000448238 PRKG1Q13976 671 aa9.78□□□□□ -0.84
NIPBL-202ENST00000448238 BRAPQ7Z569 592 aa9.78□□□□□ -0.84
NIPBL-202ENST00000448238 ABHD8Q96I13 439 aa9.78□□□□□ -0.84
NIPBL-202ENST00000448238 ALG1Q9BT22 464 aa9.78□□□□□ -0.84
NIPBL-202ENST00000448238 BOLA2Q9H3K6 86 aa9.78□□□□□ -0.84
NIPBL-202ENST00000448238 UBXN8O00124 270 aa9.78□□□□□ -0.84
NIPBL-202ENST00000448238 PRKAR2BP31323 418 aa9.78□□□□□ -0.84
NIPBL-202ENST00000448238 TMEM259Q4ZIN3 620 aa9.78□□□□□ -0.84
NIPBL-202ENST00000448238 NOSTRINQ8IVI9 506 aa9.78□□□□□ -0.84
NIPBL-202ENST00000448238 NOC4LQ9BVI4 516 aaKnown RBP9.78□□□□□ -0.84
NIPBL-202ENST00000448238 CNGB3Q9NQW8 809 aa9.78□□□□□ -0.84
NIPBL-202ENST00000448238 RASSF9O75901 435 aa9.78□□□□□ -0.84
NIPBL-202ENST00000448238 TMCC1O94876 653 aa9.78□□□□□ -0.84
NIPBL-202ENST00000448238 INHBAP08476 426 aa9.78□□□□□ -0.84
NIPBL-202ENST00000448238 EEF1GP26641 437 aaKnown RBP9.78□□□□□ -0.84
NIPBL-202ENST00000448238 PAPOLBQ9NRJ5 636 aaKnown RBP9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms