RNA–Protein interactions for RNA: ENST00000438395.5

VPS50-204, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 3

Gene VPS50, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-204ENST00000438395 CYP2E1P05181 493 aaPredicted RBP9.44□□□□□ -0.9
VPS50-204ENST00000438395 MS4A1P11836 297 aa9.44□□□□□ -0.9
VPS50-204ENST00000438395 BACE1P56817 501 aa9.44□□□□□ -0.9
VPS50-204ENST00000438395 PPP4CP60510 307 aa9.44□□□□□ -0.9
VPS50-204ENST00000438395 AACSQ86V21 672 aa9.44□□□□□ -0.9
VPS50-204ENST00000438395 TTC13Q8NBP0 860 aa9.44□□□□□ -0.9
VPS50-204ENST00000438395 GTF3C2Q8WUA4 911 aaPredicted RBP9.44□□□□□ -0.9
VPS50-204ENST00000438395 WDR18Q9BV38 432 aa9.44□□□□□ -0.9
VPS50-204ENST00000438395 CCDC8Q9H0W5 538 aaPredicted RBP9.44□□□□□ -0.9
VPS50-204ENST00000438395 PIH1D3Q9NQM4 214 aaKnown RBP9.44□□□□□ -0.9
VPS50-204ENST00000438395 TSR3Q9UJK0 312 aaKnown RBP9.44□□□□□ -0.9
VPS50-204ENST00000438395 DBNLQ9UJU6 430 aaKnown RBP9.44□□□□□ -0.9
VPS50-204ENST00000438395 PALD1Q9ULE6 856 aa9.44□□□□□ -0.9
VPS50-204ENST00000438395 ZBTB21Q9ULJ3 1066 aa9.44□□□□□ -0.9
VPS50-204ENST00000438395 ZSWIM8A7E2V4 1837 aa9.44□□□□□ -0.9
VPS50-204ENST00000438395 C19orf81C9J6K1 198 aa9.43□□□□□ -0.9
VPS50-204ENST00000438395 USP17L10C9JJH3 530 aa9.43□□□□□ -0.9
VPS50-204ENST00000438395 RNF40O75150 1001 aa9.43□□□□□ -0.9
VPS50-204ENST00000438395 HMMRO75330 724 aa9.43□□□□□ -0.9
VPS50-204ENST00000438395 GDF11O95390 407 aa9.43□□□□□ -0.9
VPS50-204ENST00000438395 SH3D19Q5HYK7 790 aa9.43□□□□□ -0.9
VPS50-204ENST00000438395 TMED8Q6PL24 325 aaPredicted RBP9.43□□□□□ -0.9
VPS50-204ENST00000438395 MAGEB6Q8N7X4 407 aa9.43□□□□□ -0.9
VPS50-204ENST00000438395 MIGA1Q8NAN2 632 aa9.43□□□□□ -0.9
VPS50-204ENST00000438395 GPRC5AQ8NFJ5 357 aa9.43□□□□□ -0.9
VPS50-204ENST00000438395 SOCS4Q8WXH5 440 aa9.43□□□□□ -0.9
VPS50-204ENST00000438395 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.43□□□□□ -0.9
VPS50-204ENST00000438395 BCL11AQ9H165 835 aa9.43□□□□□ -0.9
VPS50-204ENST00000438395 TLR7Q9NYK1 1049 aaKnown RBP9.43□□□□□ -0.9
VPS50-204ENST00000438395 NOP58Q9Y2X3 529 aaKnown RBP9.43□□□□□ -0.9
VPS50-204ENST00000438395 GLRX3O76003 335 aaKnown RBP9.42□□□□□ -0.9
VPS50-204ENST00000438395 MAPK4P31152 587 aa9.42□□□□□ -0.9
VPS50-204ENST00000438395 FXR1P51114 621 aaKnown RBP eCLIP9.42□□□□□ -0.9
VPS50-204ENST00000438395 HERVK_113P62684 666 aa9.42□□□□□ -0.9
VPS50-204ENST00000438395 DYNLL1P63167 89 aaKnown RBP9.42□□□□□ -0.9
VPS50-204ENST00000438395 PTGDRQ13258 359 aa9.42□□□□□ -0.9
VPS50-204ENST00000438395 TTF1Q15361 905 aaPredicted RBP9.42□□□□□ -0.9
VPS50-204ENST00000438395 USP17L2Q6R6M4 530 aa9.42□□□□□ -0.9
VPS50-204ENST00000438395 NECAB2Q7Z6G3 386 aa9.42□□□□□ -0.9
VPS50-204ENST00000438395 ADGRA1Q86SQ6 560 aa9.42□□□□□ -0.9
VPS50-204ENST00000438395 TTC6Q86TZ1 520 aa9.42□□□□□ -0.9
VPS50-204ENST00000438395 NUDT12Q9BQG2 462 aa9.42□□□□□ -0.9
VPS50-204ENST00000438395 PAGR1Q9BTK6 254 aa9.42□□□□□ -0.9
VPS50-204ENST00000438395 HMX1Q9NP08 348 aaPredicted RBP9.42□□□□□ -0.9
VPS50-204ENST00000438395 CABP5Q9NP86 173 aa9.42□□□□□ -0.9
VPS50-204ENST00000438395 RBM27Q9P2N5 1060 aaKnown RBP9.42□□□□□ -0.9
VPS50-204ENST00000438395 MORF4L1Q9UBU8 362 aa9.42□□□□□ -0.9
VPS50-204ENST00000438395 SERPINB13Q9UIV8 391 aa9.42□□□□□ -0.9
VPS50-204ENST00000438395 EXOC6BQ9Y2D4 811 aa9.42□□□□□ -0.9
VPS50-204ENST00000438395 MAST2Q6P0Q8 1798 aa9.42□□□□□ -0.9
VPS50-204ENST00000438395 APBB1O00213 710 aa9.41□□□□□ -0.9
VPS50-204ENST00000438395 ZBTB7BO15156 539 aaPredicted RBP9.41□□□□□ -0.9
VPS50-204ENST00000438395 GH2P01242 217 aa9.41□□□□□ -0.9
VPS50-204ENST00000438395 IFIT2P09913 472 aaKnown RBP9.41□□□□□ -0.9
VPS50-204ENST00000438395 RLBP1P12271 317 aa9.41□□□□□ -0.9
VPS50-204ENST00000438395 ZKSCAN1P17029 563 aaPredicted RBP9.41□□□□□ -0.9
VPS50-204ENST00000438395 HOXA7P31268 230 aaPredicted RBP9.41□□□□□ -0.9
VPS50-204ENST00000438395 USP14P54578 494 aa9.41□□□□□ -0.9
VPS50-204ENST00000438395 CCNA1P78396 465 aa9.41□□□□□ -0.9
VPS50-204ENST00000438395 RRP1BQ14684 758 aaKnown RBP9.41□□□□□ -0.9
VPS50-204ENST00000438395 RAB3GAP1Q15042 981 aa9.41□□□□□ -0.9
VPS50-204ENST00000438395 ZYXQ15942 572 aaKnown RBP9.41□□□□□ -0.9
VPS50-204ENST00000438395 WDR78Q5VTH9 848 aa9.41□□□□□ -0.9
VPS50-204ENST00000438395 CEP85Q6P2H3 762 aa9.41□□□□□ -0.9
VPS50-204ENST00000438395 TRMT44Q8IYL2 757 aaKnown RBP9.41□□□□□ -0.9
VPS50-204ENST00000438395 CLASRPQ8N2M8 674 aaKnown RBP9.41□□□□□ -0.9
VPS50-204ENST00000438395 EAF2Q96CJ1 260 aaPredicted RBP9.41□□□□□ -0.9
VPS50-204ENST00000438395 CRNKL1Q9BZJ0 848 aaKnown RBP9.41□□□□□ -0.9
VPS50-204ENST00000438395 CHMP4BQ9H444 224 aaKnown RBP9.41□□□□□ -0.9
VPS50-204ENST00000438395 DNAJC18Q9H819 358 aa9.41□□□□□ -0.9
VPS50-204ENST00000438395 PAK6Q9NQU5 681 aaPredicted RBP9.41□□□□□ -0.9
VPS50-204ENST00000438395 ZBED9Q6R2W3 1325 aa9.4□□□□□ -0.9
VPS50-204ENST00000438395 RPTORQ8N122 1335 aa9.4□□□□□ -0.9
VPS50-204ENST00000438395 MAGEB6P1A0A0J9YX57 407 aa9.4□□□□□ -0.9
VPS50-204ENST00000438395 POLR3DP05423 398 aaPredicted RBP9.4□□□□□ -0.9
VPS50-204ENST00000438395 CYP2B6P20813 491 aa9.4□□□□□ -0.9
VPS50-204ENST00000438395 RGS2P41220 211 aa9.4□□□□□ -0.9
VPS50-204ENST00000438395 ABCB5Q2M3G0 1257 aa9.4□□□□□ -0.9
VPS50-204ENST00000438395 DIEXFQ68CQ4 756 aaKnown RBP9.4□□□□□ -0.9
VPS50-204ENST00000438395 UBE2Q1Q7Z7E8 422 aa9.4□□□□□ -0.9
VPS50-204ENST00000438395 AMOTL1Q8IY63 956 aa9.4□□□□□ -0.9
VPS50-204ENST00000438395 ANKLE1Q8NAG6 615 aa9.4□□□□□ -0.9
VPS50-204ENST00000438395 PANK1Q8TE04 598 aa9.4□□□□□ -0.9
VPS50-204ENST00000438395 DDRGK1Q96HY6 314 aa9.4□□□□□ -0.9
VPS50-204ENST00000438395 PAWRQ96IZ0 340 aaKnown RBP9.4□□□□□ -0.9
VPS50-204ENST00000438395 DNAJC2Q99543 621 aaKnown RBP9.4□□□□□ -0.9
VPS50-204ENST00000438395 P2RX7Q99572 595 aaKnown RBP9.4□□□□□ -0.9
VPS50-204ENST00000438395 EHD4Q9H223 541 aa9.4□□□□□ -0.9
VPS50-204ENST00000438395 IL1RAPL2Q9NP60 686 aa9.4□□□□□ -0.9
VPS50-204ENST00000438395 IVNS1ABPQ9Y6Y0 642 aa9.4□□□□□ -0.9
VPS50-204ENST00000438395 USP17L15C9J2P7 530 aa9.39□□□□□ -0.91
VPS50-204ENST00000438395 USP17L13C9JLJ4 530 aa9.39□□□□□ -0.91
VPS50-204ENST00000438395 USP17L11C9JVI0 530 aa9.39□□□□□ -0.91
VPS50-204ENST00000438395 USP17L18D6R9N7 530 aa9.39□□□□□ -0.91
VPS50-204ENST00000438395 USP17L22D6RA61 530 aa9.39□□□□□ -0.91
VPS50-204ENST00000438395 USP17L17D6RBQ6 530 aa9.39□□□□□ -0.91
VPS50-204ENST00000438395 USP17L19D6RCP7 530 aa9.39□□□□□ -0.91
VPS50-204ENST00000438395 USP17L20D6RJB6 530 aa9.39□□□□□ -0.91
VPS50-204ENST00000438395 MPHOSPH10O00566 681 aaKnown RBP9.39□□□□□ -0.91
VPS50-204ENST00000438395 ERVK-9P63128 1117 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms