RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 APPBP2Q92624 585 aa13.35□□□□□ -0.27
CCDC88A-207ENST00000436346 TBC1D8O95759 1140 aa13.35□□□□□ -0.27
CCDC88A-207ENST00000436346 CD19P15391 556 aa13.35□□□□□ -0.27
CCDC88A-207ENST00000436346 ZNF365Q70YC5 407 aa13.35□□□□□ -0.27
CCDC88A-207ENST00000436346 CEP57Q86XR8 500 aa13.35□□□□□ -0.27
CCDC88A-207ENST00000436346 HDXQ7Z353 690 aa13.35□□□□□ -0.27
CCDC88A-207ENST00000436346 SNX21Q969T3 373 aa13.35□□□□□ -0.27
CCDC88A-207ENST00000436346 KDRP35968 1356 aa13.35□□□□□ -0.27
CCDC88A-207ENST00000436346 OATP04181 439 aa13.35□□□□□ -0.27
CCDC88A-207ENST00000436346 CYP2J2P51589 502 aa13.35□□□□□ -0.27
CCDC88A-207ENST00000436346 GCKRQ14397 625 aa13.35□□□□□ -0.27
CCDC88A-207ENST00000436346 POSTNQ15063 836 aa13.35□□□□□ -0.27
CCDC88A-207ENST00000436346 LONRF3Q496Y0 759 aa13.35□□□□□ -0.27
CCDC88A-207ENST00000436346 C8orf74Q6P047 294 aa13.35□□□□□ -0.27
CCDC88A-207ENST00000436346 ASIC3Q9UHC3 531 aa13.35□□□□□ -0.27
CCDC88A-207ENST00000436346 VIMP08670 466 aaKnown RBP13.35□□□□□ -0.27
CCDC88A-207ENST00000436346 PPP1R2P41236 205 aa13.35□□□□□ -0.27
CCDC88A-207ENST00000436346 BAG6P46379 1132 aa13.35□□□□□ -0.27
CCDC88A-207ENST00000436346 ST7Q9NRC1 585 aa13.35□□□□□ -0.27
CCDC88A-207ENST00000436346 AFG3L2Q9Y4W6 797 aa13.35□□□□□ -0.27
CCDC88A-207ENST00000436346 SAMD9LQ8IVG5 1584 aa13.34□□□□□ -0.27
CCDC88A-207ENST00000436346 SEPT14Q6ZU15 432 aa13.34□□□□□ -0.27
CCDC88A-207ENST00000436346 TRIM31Q9BZY9 425 aa13.34□□□□□ -0.27
CCDC88A-207ENST00000436346 CCDC62Q6P9F0 684 aa13.34□□□□□ -0.27
CCDC88A-207ENST00000436346 ZHX1Q9UKY1 873 aaPredicted RBP13.34□□□□□ -0.27
CCDC88A-207ENST00000436346 BLMP54132 1417 aaPredicted RBP13.34□□□□□ -0.27
CCDC88A-207ENST00000436346 CETN3O15182 167 aa13.34□□□□□ -0.27
CCDC88A-207ENST00000436346 VAMP4O75379 141 aa13.34□□□□□ -0.27
CCDC88A-207ENST00000436346 GPIHBP1Q8IV16 184 aa13.34□□□□□ -0.27
CCDC88A-207ENST00000436346 SKA2Q8WVK7 121 aaPredicted RBP13.34□□□□□ -0.27
CCDC88A-207ENST00000436346 RLBP1P12271 317 aa13.34□□□□□ -0.27
CCDC88A-207ENST00000436346 MMS19Q96T76 1030 aa13.34□□□□□ -0.27
CCDC88A-207ENST00000436346 USP26Q9BXU7 913 aa13.34□□□□□ -0.27
CCDC88A-207ENST00000436346 ARPP21Q9UBL0 812 aaPredicted RBP13.34□□□□□ -0.27
CCDC88A-207ENST00000436346 TCP10L2B9ZVM9 353 aa13.34□□□□□ -0.27
CCDC88A-207ENST00000436346 TRIM50Q86XT4 487 aa13.34□□□□□ -0.27
CCDC88A-207ENST00000436346 C2CD5Q86YS7 1000 aa13.34□□□□□ -0.27
CCDC88A-207ENST00000436346 GTF3C6Q969F1 213 aa13.34□□□□□ -0.27
CCDC88A-207ENST00000436346 INTS4Q96HW7 963 aaKnown RBP13.34□□□□□ -0.27
CCDC88A-207ENST00000436346 VPS54Q9P1Q0 977 aa13.34□□□□□ -0.27
CCDC88A-207ENST00000436346 FAM47AQ5JRC9 791 aa13.33□□□□□ -0.27
CCDC88A-207ENST00000436346 FAM193BQ96PV7 902 aaPredicted RBP13.33□□□□□ -0.27
CCDC88A-207ENST00000436346 NAPGQ99747 312 aaPredicted RBP13.33□□□□□ -0.27
CCDC88A-207ENST00000436346 YEATS2Q9ULM3 1422 aa13.33□□□□□ -0.28
CCDC88A-207ENST00000436346 ZNF202O95125 648 aa13.33□□□□□ -0.28
CCDC88A-207ENST00000436346 GKAP1Q5VSY0 366 aaPredicted RBP13.33□□□□□ -0.28
CCDC88A-207ENST00000436346 SFMBT2Q5VUG0 894 aa13.33□□□□□ -0.28
CCDC88A-207ENST00000436346 SYCE1Q8N0S2 351 aa13.33□□□□□ -0.28
CCDC88A-207ENST00000436346 CTTNBP2NLQ9P2B4 639 aa13.33□□□□□ -0.28
CCDC88A-207ENST00000436346 GTF2IP78347 998 aa13.33□□□□□ -0.28
CCDC88A-207ENST00000436346 GNPTABQ3T906 1256 aa13.33□□□□□ -0.28
CCDC88A-207ENST00000436346 DENND2CQ68D51 928 aa13.33□□□□□ -0.28
CCDC88A-207ENST00000436346 MIER3Q7Z3K6 550 aa13.33□□□□□ -0.28
CCDC88A-207ENST00000436346 DEPTORQ8TB45 409 aa13.33□□□□□ -0.28
CCDC88A-207ENST00000436346 DDX25Q9UHL0 483 aaKnown RBP13.33□□□□□ -0.28
CCDC88A-207ENST00000436346 MYO5BQ9ULV0 1848 aa13.33□□□□□ -0.28
CCDC88A-207ENST00000436346 A1BGP04217 495 aa13.33□□□□□ -0.28
CCDC88A-207ENST00000436346 ATP11AP98196 1134 aa13.33□□□□□ -0.28
CCDC88A-207ENST00000436346 PRR16Q569H4 304 aa13.33□□□□□ -0.28
CCDC88A-207ENST00000436346 GPBP1Q86WP2 473 aa13.33□□□□□ -0.28
CCDC88A-207ENST00000436346 PTPRKQ15262 1439 aa13.33□□□□□ -0.28
CCDC88A-207ENST00000436346 USP19O94966 1318 aa13.33□□□□□ -0.28
CCDC88A-207ENST00000436346 C4orf50Q6ZRC1 276 aa13.33□□□□□ -0.28
CCDC88A-207ENST00000436346 MLXIPQ9HAP2 919 aa13.33□□□□□ -0.28
CCDC88A-207ENST00000436346 KDM6BO15054 1643 aa13.33□□□□□ -0.28
CCDC88A-207ENST00000436346 CAMSAP1Q5T5Y3 1602 aa13.33□□□□□ -0.28
CCDC88A-207ENST00000436346 TTC36A6NLP5 189 aa13.33□□□□□ -0.28
CCDC88A-207ENST00000436346 Q3C1V9 767 aa13.33□□□□□ -0.28
CCDC88A-207ENST00000436346 RSAD2Q8WXG1 361 aa13.33□□□□□ -0.28
CCDC88A-207ENST00000436346 NBPF3Q9H094 633 aa13.33□□□□□ -0.28
CCDC88A-207ENST00000436346 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.33□□□□□ -0.28
CCDC88A-207ENST00000436346 K7ENM7 598 aa13.32□□□□□ -0.28
CCDC88A-207ENST00000436346 RIOK3O14730 519 aaKnown RBP13.32□□□□□ -0.28
CCDC88A-207ENST00000436346 PIK3CAP42336 1068 aa13.32□□□□□ -0.28
CCDC88A-207ENST00000436346 PPARAQ07869 468 aa13.32□□□□□ -0.28
CCDC88A-207ENST00000436346 ITKQ08881 620 aa13.32□□□□□ -0.28
CCDC88A-207ENST00000436346 DYMQ7RTS9 669 aa13.32□□□□□ -0.28
CCDC88A-207ENST00000436346 ATF7P17544 494 aaPredicted RBP13.32□□□□□ -0.28
CCDC88A-207ENST00000436346 LRMPQ12912 555 aa13.32□□□□□ -0.28
CCDC88A-207ENST00000436346 LGR6Q9HBX8 967 aa13.32□□□□□ -0.28
CCDC88A-207ENST00000436346 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.32□□□□□ -0.28
CCDC88A-207ENST00000436346 CUTAO60888 179 aa13.32□□□□□ -0.28
CCDC88A-207ENST00000436346 POLGP54098 1239 aaPredicted RBP13.32□□□□□ -0.28
CCDC88A-207ENST00000436346 SLC9C1Q4G0N8 1177 aa13.32□□□□□ -0.28
CCDC88A-207ENST00000436346 G2E3Q7L622 706 aa13.32□□□□□ -0.28
CCDC88A-207ENST00000436346 ANKRD35Q8N283 1001 aa13.32□□□□□ -0.28
CCDC88A-207ENST00000436346 ZSCAN10Q96SZ4 725 aaPredicted RBP13.32□□□□□ -0.28
CCDC88A-207ENST00000436346 KIF9Q9HAQ2 790 aa13.32□□□□□ -0.28
CCDC88A-207ENST00000436346 CAPN9O14815 690 aa13.32□□□□□ -0.28
CCDC88A-207ENST00000436346 PSTPIP2Q9H939 334 aa13.32□□□□□ -0.28
CCDC88A-207ENST00000436346 SPDYE16A6NNV3 312 aaPredicted RBP13.32□□□□□ -0.28
CCDC88A-207ENST00000436346 SPDYE2Q495Y8 402 aa13.32□□□□□ -0.28
CCDC88A-207ENST00000436346 ATP2A3Q93084 1043 aa13.32□□□□□ -0.28
CCDC88A-207ENST00000436346 SLC12A2P55011 1212 aa13.32□□□□□ -0.28
CCDC88A-207ENST00000436346 NONOQ15233 471 aaKnown RBP eCLIP13.32□□□□□ -0.28
CCDC88A-207ENST00000436346 SYT10Q6XYQ8 523 aa13.32□□□□□ -0.28
CCDC88A-207ENST00000436346 NCAPG2Q86XI2 1143 aa13.32□□□□□ -0.28
CCDC88A-207ENST00000436346 IFT20Q8IY31 132 aa13.32□□□□□ -0.28
CCDC88A-207ENST00000436346 TUBB4AP04350 444 aa13.32□□□□□ -0.28
CCDC88A-207ENST00000436346 DBNDD2Q9BQY9 259 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms