RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 CALML3P27482 149 aa15.53■□□□□ 0.08
COL6A3-207ENST00000433762 CASQ1P31415 396 aa15.53■□□□□ 0.08
COL6A3-207ENST00000433762 TRIM14Q14142 442 aa15.53■□□□□ 0.08
COL6A3-207ENST00000433762 CTR9Q6PD62 1173 aa15.53■□□□□ 0.08
COL6A3-207ENST00000433762 IQUBQ8NA54 791 aa15.53■□□□□ 0.08
COL6A3-207ENST00000433762 CTCFLQ8NI51 663 aaPredicted RBP15.53■□□□□ 0.08
COL6A3-207ENST00000433762 SYMPKQ92797 1274 aaKnown RBP15.53■□□□□ 0.08
COL6A3-207ENST00000433762 ABCF2Q9UG63 623 aa15.53■□□□□ 0.08
COL6A3-207ENST00000433762 ARHGAP29Q52LW3 1261 aa15.52■□□□□ 0.08
COL6A3-207ENST00000433762 CCDC178Q5BJE1 867 aa15.52■□□□□ 0.08
COL6A3-207ENST00000433762 MEX3CQ5U5Q3 659 aaKnown RBP15.52■□□□□ 0.08
COL6A3-207ENST00000433762 JAKMIP3Q5VZ66 844 aa15.52■□□□□ 0.08
COL6A3-207ENST00000433762 BARGINQ6ZT62 677 aa15.52■□□□□ 0.08
COL6A3-207ENST00000433762 CNGA4Q8IV77 575 aa15.52■□□□□ 0.08
COL6A3-207ENST00000433762 GPR161Q8N6U8 529 aaKnown RBP15.52■□□□□ 0.08
COL6A3-207ENST00000433762 DHX58Q96C10 678 aa15.52■□□□□ 0.08
COL6A3-207ENST00000433762 CRNKL1Q9BZJ0 848 aaKnown RBP15.52■□□□□ 0.08
COL6A3-207ENST00000433762 RMND1Q9NWS8 449 aa15.52■□□□□ 0.08
COL6A3-207ENST00000433762 MRFAP1Q9Y605 127 aa15.52■□□□□ 0.08
COL6A3-207ENST00000433762 ZRANB2O95218 330 aaKnown RBP eCLIP15.51■□□□□ 0.07
COL6A3-207ENST00000433762 CLCN6P51797 869 aa15.51■□□□□ 0.07
COL6A3-207ENST00000433762 E2F4Q16254 413 aa15.51■□□□□ 0.07
COL6A3-207ENST00000433762 PPFIBP1Q86W92 1011 aa15.51■□□□□ 0.07
COL6A3-207ENST00000433762 FAM84BQ96KN1 310 aaPredicted RBP15.51■□□□□ 0.07
COL6A3-207ENST00000433762 SAMSN1Q9NSI8 373 aaKnown RBP15.51■□□□□ 0.07
COL6A3-207ENST00000433762 ZNF446Q9NWS9 450 aa15.51■□□□□ 0.07
COL6A3-207ENST00000433762 MINPP1Q9UNW1 487 aa15.51■□□□□ 0.07
COL6A3-207ENST00000433762 V9GY48 417 aaPredicted RBP15.51■□□□□ 0.07
COL6A3-207ENST00000433762 PPP1R3GB7ZBB8 358 aa15.51■□□□□ 0.07
COL6A3-207ENST00000433762 GTPBP6O43824 516 aaPredicted RBP15.51■□□□□ 0.07
COL6A3-207ENST00000433762 URI1O94763 535 aaPredicted RBP15.51■□□□□ 0.07
COL6A3-207ENST00000433762 KIF5BP33176 963 aa15.51■□□□□ 0.07
COL6A3-207ENST00000433762 PFKFB3Q16875 520 aaPredicted RBP15.51■□□□□ 0.07
COL6A3-207ENST00000433762 USP49Q70CQ1 688 aa15.51■□□□□ 0.07
COL6A3-207ENST00000433762 PDILTQ8N807 584 aa15.51■□□□□ 0.07
COL6A3-207ENST00000433762 ANKS1AQ92625 1134 aa15.51■□□□□ 0.07
COL6A3-207ENST00000433762 KIFC2Q96AC6 838 aa15.51■□□□□ 0.07
COL6A3-207ENST00000433762 NSUN4Q96CB9 384 aaKnown RBP15.51■□□□□ 0.07
COL6A3-207ENST00000433762 ANKRD2Q9GZV1 360 aa15.51■□□□□ 0.07
COL6A3-207ENST00000433762 NOL12Q9UGY1 213 aaKnown RBP eCLIP15.51■□□□□ 0.07
COL6A3-207ENST00000433762 LIMA1Q9UHB6 759 aaKnown RBP15.51■□□□□ 0.07
COL6A3-207ENST00000433762 V9GYY5 206 aaPredicted RBP15.51■□□□□ 0.07
COL6A3-207ENST00000433762 CNTNAP4Q9C0A0 1308 aa15.51■□□□□ 0.07
COL6A3-207ENST00000433762 A0A087X0B3 334 aa15.5■□□□□ 0.07
COL6A3-207ENST00000433762 PLEKHA8P1O95397 391 aa15.5■□□□□ 0.07
COL6A3-207ENST00000433762 MYL1P05976 194 aa15.5■□□□□ 0.07
COL6A3-207ENST00000433762 SCG2P13521 617 aa15.5■□□□□ 0.07
COL6A3-207ENST00000433762 GYG1P46976 350 aa15.5■□□□□ 0.07
COL6A3-207ENST00000433762 CMTR1Q8N1G2 835 aaKnown RBP15.5■□□□□ 0.07
COL6A3-207ENST00000433762 CCDC82Q8N4S0 544 aa15.5■□□□□ 0.07
COL6A3-207ENST00000433762 LONP1P36776 959 aaKnown RBP15.5■□□□□ 0.07
COL6A3-207ENST00000433762 TAF3Q5VWG9 929 aa15.5■□□□□ 0.07
COL6A3-207ENST00000433762 GALNT17Q6IS24 598 aa15.5■□□□□ 0.07
COL6A3-207ENST00000433762 TMCO3Q6UWJ1 677 aa15.5■□□□□ 0.07
COL6A3-207ENST00000433762 RSRC2Q7L4I2 434 aaKnown RBP15.5■□□□□ 0.07
COL6A3-207ENST00000433762 TRMT44Q8IYL2 757 aaKnown RBP15.5■□□□□ 0.07
COL6A3-207ENST00000433762 FNBP4Q8N3X1 1017 aaPredicted RBP15.5■□□□□ 0.07
COL6A3-207ENST00000433762 RABGGTAQ92696 567 aa15.5■□□□□ 0.07
COL6A3-207ENST00000433762 EPSTI1Q96J88 318 aa15.5■□□□□ 0.07
COL6A3-207ENST00000433762 NYXQ9GZU5 481 aa15.5■□□□□ 0.07
COL6A3-207ENST00000433762 RWDD2AQ9UIY3 292 aa15.5■□□□□ 0.07
COL6A3-207ENST00000433762 SPATA31A5Q5VU36 1347 aa15.5■□□□□ 0.07
COL6A3-207ENST00000433762 SPATA31A7Q8IWB4 1347 aa15.5■□□□□ 0.07
COL6A3-207ENST00000433762 FANCGO15287 622 aa15.49■□□□□ 0.07
COL6A3-207ENST00000433762 MFAP3LO75121 409 aa15.49■□□□□ 0.07
COL6A3-207ENST00000433762 GNG11P61952 73 aa15.49■□□□□ 0.07
COL6A3-207ENST00000433762 TERF2Q15554 542 aa15.49■□□□□ 0.07
COL6A3-207ENST00000433762 ZNF827Q17R98 1081 aa15.49■□□□□ 0.07
COL6A3-207ENST00000433762 GRAMD1CQ8IYS0 662 aa15.49■□□□□ 0.07
COL6A3-207ENST00000433762 FHOD1Q9Y613 1164 aa15.49■□□□□ 0.07
COL6A3-207ENST00000433762 ROBO3Q96MS0 1386 aa15.49■□□□□ 0.07
COL6A3-207ENST00000433762 TAF1P21675 1872 aa15.49■□□□□ 0.07
COL6A3-207ENST00000433762 PTGDRQ13258 359 aa15.49■□□□□ 0.07
COL6A3-207ENST00000433762 EARS2Q5JPH6 523 aaKnown RBP15.49■□□□□ 0.07
COL6A3-207ENST00000433762 PDXDC2PQ6P474 469 aa15.49■□□□□ 0.07
COL6A3-207ENST00000433762 RASGRP2Q7LDG7 609 aa15.49■□□□□ 0.07
COL6A3-207ENST00000433762 IGSF22Q8N9C0 903 aa15.49■□□□□ 0.07
COL6A3-207ENST00000433762 MARCH10Q8NA82 808 aaPredicted RBP15.49■□□□□ 0.07
COL6A3-207ENST00000433762 ANKRD20A12PQ8NF67 263 aa15.49■□□□□ 0.07
COL6A3-207ENST00000433762 ZNF384Q8TF68 577 aa15.49■□□□□ 0.07
COL6A3-207ENST00000433762 DCP1AQ9NPI6 582 aaPredicted RBP15.49■□□□□ 0.07
COL6A3-207ENST00000433762 MYO1AQ9UBC5 1043 aa15.49■□□□□ 0.07
COL6A3-207ENST00000433762 GNAQP50148 359 aa15.48■□□□□ 0.07
COL6A3-207ENST00000433762 ADKP55263 362 aaKnown RBP15.48■□□□□ 0.07
COL6A3-207ENST00000433762 SPTY2D1Q68D10 685 aaPredicted RBP15.48■□□□□ 0.07
COL6A3-207ENST00000433762 TOGARAM2Q6ZUX3 1019 aa15.48■□□□□ 0.07
COL6A3-207ENST00000433762 DGKHQ86XP1 1220 aa15.48■□□□□ 0.07
COL6A3-207ENST00000433762 CARD6Q9BX69 1037 aa15.48■□□□□ 0.07
COL6A3-207ENST00000433762 TTF2Q9UNY4 1162 aaKnown RBP15.48■□□□□ 0.07
COL6A3-207ENST00000433762 ADGRG1Q9Y653 693 aa15.48■□□□□ 0.07
COL6A3-207ENST00000433762 FAM205CA6NFA0 338 aa15.48■□□□□ 0.07
COL6A3-207ENST00000433762 USP17L12C9JPN9 530 aa15.48■□□□□ 0.07
COL6A3-207ENST00000433762 USP17L21D6R901 530 aa15.48■□□□□ 0.07
COL6A3-207ENST00000433762 PNMA6AP0CW24 399 aaPredicted RBP15.48■□□□□ 0.07
COL6A3-207ENST00000433762 CD44P16070 742 aaKnown RBP15.48■□□□□ 0.07
COL6A3-207ENST00000433762 TXLNAP40222 546 aa15.48■□□□□ 0.07
COL6A3-207ENST00000433762 DYNLL1P63167 89 aaKnown RBP15.48■□□□□ 0.07
COL6A3-207ENST00000433762 ERFEQ4G0M1 354 aa15.48■□□□□ 0.07
COL6A3-207ENST00000433762 SRBD1Q8N5C6 995 aaKnown RBP15.48■□□□□ 0.07
COL6A3-207ENST00000433762 DAGLBQ8NCG7 672 aa15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms