RNA–Protein interactions for RNA: ENST00000428307.6

HDAC9-210, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,359 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-210ENST00000428307 CYTH3O43739 400 aa11.94□□□□□ -0.5
HDAC9-210ENST00000428307 SLURP2P0DP57 97 aa11.94□□□□□ -0.5
HDAC9-210ENST00000428307 RBM5P52756 815 aaKnown RBP eCLIP11.94□□□□□ -0.5
HDAC9-210ENST00000428307 CACNB3P54284 484 aa11.94□□□□□ -0.5
HDAC9-210ENST00000428307 EIF6P56537 245 aaKnown RBP11.94□□□□□ -0.5
HDAC9-210ENST00000428307 GRM4Q14833 912 aa11.94□□□□□ -0.5
HDAC9-210ENST00000428307 SLC35G1Q2M3R5 365 aa11.94□□□□□ -0.5
HDAC9-210ENST00000428307 LONRF3Q496Y0 759 aa11.94□□□□□ -0.5
HDAC9-210ENST00000428307 CDC42EP5Q6NZY7 148 aa11.94□□□□□ -0.5
HDAC9-210ENST00000428307 DEFB132Q7Z7B7 95 aa11.94□□□□□ -0.5
HDAC9-210ENST00000428307 FBXO2Q9UK22 296 aaPredicted RBP11.94□□□□□ -0.5
HDAC9-210ENST00000428307 BECN2A8MW95 431 aa11.94□□□□□ -0.5
HDAC9-210ENST00000428307 GOLGA6L19H0YKK7 550 aa11.94□□□□□ -0.5
HDAC9-210ENST00000428307 ECE2O60344 883 aa11.94□□□□□ -0.5
HDAC9-210ENST00000428307 PTPREP23469 700 aa11.94□□□□□ -0.5
HDAC9-210ENST00000428307 NT5C2P49902 561 aa11.94□□□□□ -0.5
HDAC9-210ENST00000428307 NFIAQ12857 509 aa11.94□□□□□ -0.5
HDAC9-210ENST00000428307 IQCB1Q15051 598 aa11.94□□□□□ -0.5
HDAC9-210ENST00000428307 ZNF174Q15697 407 aa11.94□□□□□ -0.5
HDAC9-210ENST00000428307 AOC3Q16853 763 aa11.94□□□□□ -0.5
HDAC9-210ENST00000428307 USP17L2Q6R6M4 530 aa11.94□□□□□ -0.5
HDAC9-210ENST00000428307 PIK3AP1Q6ZUJ8 805 aa11.94□□□□□ -0.5
HDAC9-210ENST00000428307 CNKSR1Q969H4 720 aa11.94□□□□□ -0.5
HDAC9-210ENST00000428307 KLRF2D3W0D1 207 aa11.93□□□□□ -0.5
HDAC9-210ENST00000428307 C21orf2O43822 256 aa11.93□□□□□ -0.5
HDAC9-210ENST00000428307 CAVIN2O95810 425 aa11.93□□□□□ -0.5
HDAC9-210ENST00000428307 CRKP46108 304 aa11.93□□□□□ -0.5
HDAC9-210ENST00000428307 DPCR1Q3MIW9 517 aa11.93□□□□□ -0.5
HDAC9-210ENST00000428307 USP49Q70CQ1 688 aa11.93□□□□□ -0.5
HDAC9-210ENST00000428307 ZFPM1Q8IX07 1006 aa11.93□□□□□ -0.5
HDAC9-210ENST00000428307 PDILTQ8N807 584 aa11.93□□□□□ -0.5
HDAC9-210ENST00000428307 TRIM5Q9C035 493 aa11.93□□□□□ -0.5
HDAC9-210ENST00000428307 ZKSCAN5Q9Y2L8 839 aa11.93□□□□□ -0.5
HDAC9-210ENST00000428307 LTBP1Q14766 1721 aa11.93□□□□□ -0.5
HDAC9-210ENST00000428307 GNAQP50148 359 aa11.93□□□□□ -0.5
HDAC9-210ENST00000428307 TCP10Q12799 353 aa11.93□□□□□ -0.5
HDAC9-210ENST00000428307 PNOCQ13519 176 aa11.93□□□□□ -0.5
HDAC9-210ENST00000428307 TYW1BQ6NUM6 668 aa11.93□□□□□ -0.5
HDAC9-210ENST00000428307 HHIPL2Q6UWX4 724 aa11.93□□□□□ -0.5
HDAC9-210ENST00000428307 CLEC10AQ8IUN9 316 aa11.93□□□□□ -0.5
HDAC9-210ENST00000428307 CNNM3Q8NE01 707 aa11.93□□□□□ -0.5
HDAC9-210ENST00000428307 TNFRSF25Q93038 417 aa11.93□□□□□ -0.5
HDAC9-210ENST00000428307 TTC12Q9H892 705 aaPredicted RBP11.93□□□□□ -0.5
HDAC9-210ENST00000428307 VAT1LQ9HCJ6 419 aa11.93□□□□□ -0.5
HDAC9-210ENST00000428307 SERPINB13Q9UIV8 391 aa11.93□□□□□ -0.5
HDAC9-210ENST00000428307 CEP131Q9UPN4 1083 aa11.93□□□□□ -0.5
HDAC9-210ENST00000428307 SRPRBQ9Y5M8 271 aaKnown RBP11.93□□□□□ -0.5
HDAC9-210ENST00000428307 LRRC37AA6NMS7 1700 aa11.93□□□□□ -0.5
HDAC9-210ENST00000428307 PALM3A6NDB9 673 aaPredicted RBP11.92□□□□□ -0.5
HDAC9-210ENST00000428307 AKR1B1P15121 316 aa11.92□□□□□ -0.5
HDAC9-210ENST00000428307 DACT2Q5SW24 774 aa11.92□□□□□ -0.5
HDAC9-210ENST00000428307 STRIP1Q5VSL9 837 aa11.92□□□□□ -0.5
HDAC9-210ENST00000428307 HEATR3Q7Z4Q2 680 aa11.92□□□□□ -0.5
HDAC9-210ENST00000428307 HOMER1Q86YM7 354 aa11.92□□□□□ -0.5
HDAC9-210ENST00000428307 CEP57L1Q8IYX8 460 aa11.92□□□□□ -0.5
HDAC9-210ENST00000428307 RASGRP4Q8TDF6 673 aa11.92□□□□□ -0.5
HDAC9-210ENST00000428307 C7orf43Q8WVR3 580 aa11.92□□□□□ -0.5
HDAC9-210ENST00000428307 CSRNP2Q9H175 543 aa11.92□□□□□ -0.5
HDAC9-210ENST00000428307 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.92□□□□□ -0.5
HDAC9-210ENST00000428307 SNED1Q8TER0 1413 aa11.92□□□□□ -0.5
HDAC9-210ENST00000428307 NRXN2Q9P2S2 1712 aa11.92□□□□□ -0.5
HDAC9-210ENST00000428307 FOXN1O15353 648 aa11.92□□□□□ -0.5
HDAC9-210ENST00000428307 POLR2DO15514 142 aaKnown RBP11.92□□□□□ -0.5
HDAC9-210ENST00000428307 TOP1P11387 765 aaKnown RBP11.92□□□□□ -0.5
HDAC9-210ENST00000428307 GABPAQ06546 454 aa11.92□□□□□ -0.5
HDAC9-210ENST00000428307 AOPEPQ8N6M6 819 aa11.92□□□□□ -0.5
HDAC9-210ENST00000428307 TIGD1Q96MW7 591 aa11.92□□□□□ -0.5
HDAC9-210ENST00000428307 UBA5Q9GZZ9 404 aa11.92□□□□□ -0.5
HDAC9-210ENST00000428307 OSBPL5Q9H0X9 879 aaPredicted RBP11.92□□□□□ -0.5
HDAC9-210ENST00000428307 FAM13BQ9NYF5 915 aa11.92□□□□□ -0.5
HDAC9-210ENST00000428307 ECM29Q5VYK3 1845 aa11.92□□□□□ -0.5
HDAC9-210ENST00000428307 FAM237AA0A1B0GTK4 181 aa11.91□□□□□ -0.5
HDAC9-210ENST00000428307 USP17L5A8MUK1 530 aa11.91□□□□□ -0.5
HDAC9-210ENST00000428307 PARP1P09874 1014 aaKnown RBP11.91□□□□□ -0.5
HDAC9-210ENST00000428307 TTC38Q5R3I4 469 aa11.91□□□□□ -0.5
HDAC9-210ENST00000428307 WWC2Q6AWC2 1192 aa11.91□□□□□ -0.5
HDAC9-210ENST00000428307 KRBA2Q6ZNG9 492 aa11.91□□□□□ -0.5
HDAC9-210ENST00000428307 DHX40Q8IX18 779 aaKnown RBP11.91□□□□□ -0.5
HDAC9-210ENST00000428307 DRC7Q8IY82 874 aa11.91□□□□□ -0.5
HDAC9-210ENST00000428307 LRRC47Q8N1G4 583 aaKnown RBP11.91□□□□□ -0.5
HDAC9-210ENST00000428307 NAT10Q9H0A0 1025 aaKnown RBP11.91□□□□□ -0.5
HDAC9-210ENST00000428307 LAMB1P07942 1786 aa11.91□□□□□ -0.5
HDAC9-210ENST00000428307 UTRNP46939 3433 aa11.91□□□□□ -0.5
HDAC9-210ENST00000428307 FAM196BA6NMK8 535 aa11.91□□□□□ -0.5
HDAC9-210ENST00000428307 MPHOSPH10O00566 681 aaKnown RBP11.91□□□□□ -0.5
HDAC9-210ENST00000428307 MCM7P33993 719 aa11.91□□□□□ -0.5
HDAC9-210ENST00000428307 PTGDRQ13258 359 aa11.91□□□□□ -0.5
HDAC9-210ENST00000428307 SF3B2Q13435 895 aaKnown RBP11.91□□□□□ -0.5
HDAC9-210ENST00000428307 METTL16Q86W50 562 aaKnown RBP11.91□□□□□ -0.5
HDAC9-210ENST00000428307 FOXP4Q8IVH2 680 aaPredicted RBP11.91□□□□□ -0.5
HDAC9-210ENST00000428307 BLIDQ8IZY5 108 aa11.91□□□□□ -0.5
HDAC9-210ENST00000428307 EPSTI1Q96J88 318 aa11.91□□□□□ -0.5
HDAC9-210ENST00000428307 ZDHHC15Q96MV8 337 aa11.91□□□□□ -0.5
HDAC9-210ENST00000428307 MTMR4Q9NYA4 1195 aa11.91□□□□□ -0.5
HDAC9-210ENST00000428307 CLIP2Q9UDT6 1046 aa11.91□□□□□ -0.5
HDAC9-210ENST00000428307 COL11A2P13942 1736 aaPredicted RBP11.9□□□□□ -0.5
HDAC9-210ENST00000428307 FRMPD2Q68DX3 1309 aaPredicted RBP11.9□□□□□ -0.5
HDAC9-210ENST00000428307 CALML3P27482 149 aa11.9□□□□□ -0.5
HDAC9-210ENST00000428307 ATP2B2Q01814 1243 aa11.9□□□□□ -0.5
HDAC9-210ENST00000428307 ZSCAN29Q8IWY8 852 aaPredicted RBP11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms