RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 ADAM21Q9UKJ8 722 aa9.78□□□□□ -0.84
USP40-203ENST00000427112 MAP3K15Q6ZN16 1313 aa9.78□□□□□ -0.84
USP40-203ENST00000427112 STRCQ7RTU9 1775 aa9.78□□□□□ -0.84
USP40-203ENST00000427112 ACTN4O43707 911 aaKnown RBP9.78□□□□□ -0.84
USP40-203ENST00000427112 ERVK-24P63145 666 aa9.78□□□□□ -0.84
USP40-203ENST00000427112 DIXDC1Q155Q3 683 aa9.78□□□□□ -0.84
USP40-203ENST00000427112 ZSCAN26Q16670 478 aa9.78□□□□□ -0.84
USP40-203ENST00000427112 TRIM47Q96LD4 638 aa9.78□□□□□ -0.84
USP40-203ENST00000427112 FAM107BQ9H098 131 aa9.78□□□□□ -0.84
USP40-203ENST00000427112 CENPHQ9H3R5 247 aa9.78□□□□□ -0.84
USP40-203ENST00000427112 TMEM51Q9NW97 253 aa9.78□□□□□ -0.84
USP40-203ENST00000427112 ADGRG1Q9Y653 693 aa9.78□□□□□ -0.84
USP40-203ENST00000427112 B4DLN1 442 aa9.78□□□□□ -0.84
USP40-203ENST00000427112 F8W031 263 aaPredicted RBP9.78□□□□□ -0.84
USP40-203ENST00000427112 CIAO1O76071 339 aa9.78□□□□□ -0.84
USP40-203ENST00000427112 GYPCP04921 128 aa9.78□□□□□ -0.84
USP40-203ENST00000427112 CACNB1Q02641 598 aaPredicted RBP9.78□□□□□ -0.84
USP40-203ENST00000427112 C1orf167Q5SNV9 1468 aa9.78□□□□□ -0.84
USP40-203ENST00000427112 ATL3Q6DD88 541 aa9.78□□□□□ -0.84
USP40-203ENST00000427112 BRINP3Q76B58 766 aa9.78□□□□□ -0.84
USP40-203ENST00000427112 TMC4Q7Z404 712 aa9.78□□□□□ -0.84
USP40-203ENST00000427112 CATIPQ7Z7H3 387 aa9.78□□□□□ -0.84
USP40-203ENST00000427112 LPIN2Q92539 896 aa9.78□□□□□ -0.84
USP40-203ENST00000427112 MCM9Q9NXL9 1143 aa9.78□□□□□ -0.84
USP40-203ENST00000427112 MRFAP1Q9Y605 127 aa9.78□□□□□ -0.84
USP40-203ENST00000427112 AFDNP55196 1824 aaKnown RBP9.77□□□□□ -0.84
USP40-203ENST00000427112 PDE8AO60658 829 aa9.77□□□□□ -0.85
USP40-203ENST00000427112 PPP6R2O75170 966 aa9.77□□□□□ -0.85
USP40-203ENST00000427112 PLEKP08567 350 aaPredicted RBP9.77□□□□□ -0.85
USP40-203ENST00000427112 IDEP14735 1019 aa9.77□□□□□ -0.85
USP40-203ENST00000427112 KRT2P35908 639 aa9.77□□□□□ -0.85
USP40-203ENST00000427112 CCDC155Q8N6L0 562 aa9.77□□□□□ -0.85
USP40-203ENST00000427112 TMEM87BQ96K49 555 aa9.77□□□□□ -0.85
USP40-203ENST00000427112 ZKSCAN7Q9P0L1 754 aaPredicted RBP9.77□□□□□ -0.85
USP40-203ENST00000427112 CPDO75976 1380 aa9.77□□□□□ -0.85
USP40-203ENST00000427112 EFCAB8A8MWE9 144 aa9.77□□□□□ -0.85
USP40-203ENST00000427112 DEXIO95424 95 aa9.77□□□□□ -0.85
USP40-203ENST00000427112 MDM2Q00987 491 aaPredicted RBP9.77□□□□□ -0.85
USP40-203ENST00000427112 APBA1Q02410 837 aa9.77□□□□□ -0.85
USP40-203ENST00000427112 LRRC41Q15345 812 aa9.77□□□□□ -0.85
USP40-203ENST00000427112 TTF1Q15361 905 aaPredicted RBP9.77□□□□□ -0.85
USP40-203ENST00000427112 EZH2Q15910 746 aaKnown RBP9.77□□□□□ -0.85
USP40-203ENST00000427112 GPR108Q9NPR9 543 aa9.77□□□□□ -0.85
USP40-203ENST00000427112 FAM207AQ9NSI2 230 aaPredicted RBP9.77□□□□□ -0.85
USP40-203ENST00000427112 AGPAT5Q9NUQ2 364 aa9.77□□□□□ -0.85
USP40-203ENST00000427112 LAMA4Q16363 1823 aa9.77□□□□□ -0.85
USP40-203ENST00000427112 MYO5AQ9Y4I1 1855 aaKnown RBP9.77□□□□□ -0.85
USP40-203ENST00000427112 TCRBV5S4A2TA0A5A2 114 aa9.77□□□□□ -0.85
USP40-203ENST00000427112 CTAGE9A4FU28 777 aa9.77□□□□□ -0.85
USP40-203ENST00000427112 TPM1P09493 284 aa9.77□□□□□ -0.85
USP40-203ENST00000427112 IFNAR1P17181 557 aa9.77□□□□□ -0.85
USP40-203ENST00000427112 STAT6P42226 847 aa9.77□□□□□ -0.85
USP40-203ENST00000427112 PLCD1P51178 756 aa9.77□□□□□ -0.85
USP40-203ENST00000427112 MORC3Q14149 939 aa9.77□□□□□ -0.85
USP40-203ENST00000427112 RILPL1Q5EBL4 403 aa9.77□□□□□ -0.85
USP40-203ENST00000427112 SRBD1Q8N5C6 995 aaKnown RBP9.77□□□□□ -0.85
USP40-203ENST00000427112 TANGO6Q9C0B7 1094 aa9.77□□□□□ -0.85
USP40-203ENST00000427112 C2orf54Q08AI8 447 aa9.76□□□□□ -0.85
USP40-203ENST00000427112 LETM2Q2VYF4 491 aa9.76□□□□□ -0.85
USP40-203ENST00000427112 CCDC122Q5T0U0 273 aa9.76□□□□□ -0.85
USP40-203ENST00000427112 PTF1AQ7RTS3 328 aa9.76□□□□□ -0.85
USP40-203ENST00000427112 KIFC2Q96AC6 838 aa9.76□□□□□ -0.85
USP40-203ENST00000427112 CRACR2AQ9BSW2 395 aa9.76□□□□□ -0.85
USP40-203ENST00000427112 TRIM21P19474 475 aaKnown RBP9.76□□□□□ -0.85
USP40-203ENST00000427112 PRCPP42785 496 aa9.76□□□□□ -0.85
USP40-203ENST00000427112 MAP3K9P80192 1104 aa9.76□□□□□ -0.85
USP40-203ENST00000427112 UBE3CQ15386 1083 aa9.76□□□□□ -0.85
USP40-203ENST00000427112 TXNRD3Q86VQ6 643 aa9.76□□□□□ -0.85
USP40-203ENST00000427112 CTCFLQ8NI51 663 aaPredicted RBP9.76□□□□□ -0.85
USP40-203ENST00000427112 ESR2Q92731 530 aa9.76□□□□□ -0.85
USP40-203ENST00000427112 CELF1Q92879 486 aaKnown RBP9.76□□□□□ -0.85
USP40-203ENST00000427112 FUT8Q9BYC5 575 aa9.76□□□□□ -0.85
USP40-203ENST00000427112 KRT23Q9C075 422 aa9.76□□□□□ -0.85
USP40-203ENST00000427112 UBA5Q9GZZ9 404 aa9.76□□□□□ -0.85
USP40-203ENST00000427112 KDM3BQ7LBC6 1761 aa9.76□□□□□ -0.85
USP40-203ENST00000427112 WDR17Q8IZU2 1322 aa9.76□□□□□ -0.85
USP40-203ENST00000427112 KCNJ18B7U540 433 aa9.76□□□□□ -0.85
USP40-203ENST00000427112 NCK2O43639 380 aa9.76□□□□□ -0.85
USP40-203ENST00000427112 ATP1A1P05023 1023 aaKnown RBP9.76□□□□□ -0.85
USP40-203ENST00000427112 CYP2C19P33261 490 aa9.76□□□□□ -0.85
USP40-203ENST00000427112 KCNJ12Q14500 433 aa9.76□□□□□ -0.85
USP40-203ENST00000427112 NR1I3Q14994 352 aa9.76□□□□□ -0.85
USP40-203ENST00000427112 MLKLQ8NB16 471 aa9.76□□□□□ -0.85
USP40-203ENST00000427112 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.76□□□□□ -0.853e-10■■■■■ 153.8
USP40-203ENST00000427112 PHLPP2Q6ZVD8 1323 aa9.75□□□□□ -0.85
USP40-203ENST00000427112 TTC26A0AVF1 554 aa9.75□□□□□ -0.85
USP40-203ENST00000427112 CTAGE15A4D2H0 777 aa9.75□□□□□ -0.85
USP40-203ENST00000427112 BUB1O43683 1085 aa9.75□□□□□ -0.85
USP40-203ENST00000427112 MYO1BO43795 1136 aa9.75□□□□□ -0.85
USP40-203ENST00000427112 STX10O60499 249 aa9.75□□□□□ -0.85
USP40-203ENST00000427112 ZRANB2O95218 330 aaKnown RBP eCLIP9.75□□□□□ -0.85
USP40-203ENST00000427112 CTAGE8P0CG41 777 aa9.75□□□□□ -0.85
USP40-203ENST00000427112 FCER1AP12319 257 aa9.75□□□□□ -0.85
USP40-203ENST00000427112 ERFEQ4G0M1 354 aa9.75□□□□□ -0.85
USP40-203ENST00000427112 HSP90B2PQ58FF3 399 aa9.75□□□□□ -0.85
USP40-203ENST00000427112 KCTD16Q68DU8 428 aa9.75□□□□□ -0.85
USP40-203ENST00000427112 CTAGE6Q86UF2 777 aa9.75□□□□□ -0.85
USP40-203ENST00000427112 IQCA1Q86XH1 822 aa9.75□□□□□ -0.85
USP40-203ENST00000427112 CTAGE4Q8IX94 777 aa9.75□□□□□ -0.85
USP40-203ENST00000427112 ZSCAN10Q96SZ4 725 aaPredicted RBP9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms