RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 GDPD2Q9HCC8 539 aa4.31□□□□□ -1.72
RTN4-208ENST00000404909 FRMD4AQ9P2Q2 1039 aaPredicted RBP4.31□□□□□ -1.72
RTN4-208ENST00000404909 FRMPD2Q68DX3 1309 aaPredicted RBP4.3□□□□□ -1.72
RTN4-208ENST00000404909 USP17L5A8MUK1 530 aa4.3□□□□□ -1.72
RTN4-208ENST00000404909 FMNL1O95466 1100 aaPredicted RBP4.3□□□□□ -1.72
RTN4-208ENST00000404909 PARP1P09874 1014 aaKnown RBP4.3□□□□□ -1.72
RTN4-208ENST00000404909 EEF2P13639 858 aaKnown RBP4.3□□□□□ -1.72
RTN4-208ENST00000404909 JAG1P78504 1218 aa4.3□□□□□ -1.72
RTN4-208ENST00000404909 GNL2Q13823 731 aaKnown RBP4.3□□□□□ -1.72
RTN4-208ENST00000404909 TRIM29Q14134 588 aa4.3□□□□□ -1.72
RTN4-208ENST00000404909 NBPF12Q5TAG4 269 aaPredicted RBP4.3□□□□□ -1.72
RTN4-208ENST00000404909 TMEM179Q6ZVK1 233 aa4.3□□□□□ -1.72
RTN4-208ENST00000404909 TMTC3Q6ZXV5 915 aa4.3□□□□□ -1.72
RTN4-208ENST00000404909 NBPF11Q86T75 865 aa4.3□□□□□ -1.72
RTN4-208ENST00000404909 SRBD1Q8N5C6 995 aaKnown RBP4.3□□□□□ -1.72
RTN4-208ENST00000404909 ANKS1AQ92625 1134 aa4.3□□□□□ -1.72
RTN4-208ENST00000404909 KANSL2Q9H9L4 492 aa4.3□□□□□ -1.72
RTN4-208ENST00000404909 VAT1LQ9HCJ6 419 aa4.3□□□□□ -1.72
RTN4-208ENST00000404909 FZD1Q9UP38 647 aa4.3□□□□□ -1.72
RTN4-208ENST00000404909 ATP6V1DQ9Y5K8 247 aa4.3□□□□□ -1.72
RTN4-208ENST00000404909 FOCADQ5VW36 1801 aa4.3□□□□□ -1.72
RTN4-208ENST00000404909 ECM29Q5VYK3 1845 aa4.3□□□□□ -1.72
RTN4-208ENST00000404909 KLRF2D3W0D1 207 aa4.3□□□□□ -1.72
RTN4-208ENST00000404909 DEXIO95424 95 aa4.3□□□□□ -1.72
RTN4-208ENST00000404909 DNM1Q05193 864 aaKnown RBP4.3□□□□□ -1.72
RTN4-208ENST00000404909 PRKG1Q13976 671 aa4.3□□□□□ -1.72
RTN4-208ENST00000404909 CCDC96Q2M329 555 aa4.3□□□□□ -1.72
RTN4-208ENST00000404909 EAPPQ56P03 285 aaPredicted RBP4.3□□□□□ -1.72
RTN4-208ENST00000404909 DLK2Q6UY11 383 aa4.3□□□□□ -1.72
RTN4-208ENST00000404909 CCDC84Q86UT8 332 aaPredicted RBP4.3□□□□□ -1.72
RTN4-208ENST00000404909 HOMER1Q86YM7 354 aa4.3□□□□□ -1.72
RTN4-208ENST00000404909 FBXO18Q8NFZ0 1043 aa4.3□□□□□ -1.72
RTN4-208ENST00000404909 UBA5Q9GZZ9 404 aa4.3□□□□□ -1.72
RTN4-208ENST00000404909 GPCPD1Q9NPB8 672 aa4.3□□□□□ -1.72
RTN4-208ENST00000404909 ADARB2Q9NS39 739 aaKnown RBP4.3□□□□□ -1.72
RTN4-208ENST00000404909 MAD2L2Q9UI95 211 aa4.3□□□□□ -1.72
RTN4-208ENST00000404909 IGKV6D-41A0A0C4DH26 115 aa4.3□□□□□ -1.72
RTN4-208ENST00000404909 FIBPO43427 364 aa4.3□□□□□ -1.72
RTN4-208ENST00000404909 PRPF40AO75400 957 aaKnown RBP4.3□□□□□ -1.72
RTN4-208ENST00000404909 PDIA4P13667 645 aaKnown RBP4.3□□□□□ -1.72
RTN4-208ENST00000404909 CEBPZQ03701 1054 aaKnown RBP4.3□□□□□ -1.72
RTN4-208ENST00000404909 GRM4Q14833 912 aa4.3□□□□□ -1.72
RTN4-208ENST00000404909 KCTD1Q719H9 257 aa4.3□□□□□ -1.72
RTN4-208ENST00000404909 METTL16Q86W50 562 aaKnown RBP4.3□□□□□ -1.72
RTN4-208ENST00000404909 APOBEC3FQ8IUX4 373 aaKnown RBP4.3□□□□□ -1.72
RTN4-208ENST00000404909 SPICE1Q8N0Z3 855 aa4.3□□□□□ -1.72
RTN4-208ENST00000404909 WASF1Q92558 559 aa4.3□□□□□ -1.72
RTN4-208ENST00000404909 TEPSINQ96N21 525 aa4.3□□□□□ -1.72
RTN4-208ENST00000404909 KCNJ14Q9UNX9 436 aa4.3□□□□□ -1.72
RTN4-208ENST00000404909 CNPY2Q9Y2B0 182 aa4.3□□□□□ -1.72
RTN4-208ENST00000404909 SBF1O95248 1867 aa4.3□□□□□ -1.72
RTN4-208ENST00000404909 PLIN4Q96Q06 1357 aa4.29□□□□□ -1.72
RTN4-208ENST00000404909 DDX11L8A8MPP1 907 aa4.29□□□□□ -1.72
RTN4-208ENST00000404909 PDHBP11177 359 aa4.29□□□□□ -1.72
RTN4-208ENST00000404909 SLC1A4P43007 532 aa4.29□□□□□ -1.72
RTN4-208ENST00000404909 GNAQP50148 359 aa4.29□□□□□ -1.72
RTN4-208ENST00000404909 ZYXQ15942 572 aaKnown RBP4.29□□□□□ -1.72
RTN4-208ENST00000404909 KRT40Q6A162 431 aa4.29□□□□□ -1.72
RTN4-208ENST00000404909 SAMD1Q6SPF0 538 aaPredicted RBP4.29□□□□□ -1.72
RTN4-208ENST00000404909 DCPSQ96C86 337 aaKnown RBP4.29□□□□□ -1.72
RTN4-208ENST00000404909 RNF26Q9BY78 433 aaPredicted RBP4.29□□□□□ -1.72
RTN4-208ENST00000404909 VPS54Q9P1Q0 977 aa4.29□□□□□ -1.72
RTN4-208ENST00000404909 TFIP11Q9UBB9 837 aaKnown RBP4.29□□□□□ -1.72
RTN4-208ENST00000404909 ZBTB21Q9ULJ3 1066 aa4.29□□□□□ -1.72
RTN4-208ENST00000404909 NID2Q14112 1375 aa4.29□□□□□ -1.72
RTN4-208ENST00000404909 PRPF3O43395 683 aaKnown RBP4.29□□□□□ -1.72
RTN4-208ENST00000404909 TBC1D12O60347 775 aa4.29□□□□□ -1.72
RTN4-208ENST00000404909 VEGFAP15692 232 aaPredicted RBP4.29□□□□□ -1.72
RTN4-208ENST00000404909 SLC16A2P36021 539 aa4.29□□□□□ -1.72
RTN4-208ENST00000404909 CAP2P40123 477 aa4.29□□□□□ -1.72
RTN4-208ENST00000404909 ECE1P42892 770 aa4.29□□□□□ -1.72
RTN4-208ENST00000404909 FUT2Q10981 343 aa4.29□□□□□ -1.72
RTN4-208ENST00000404909 IKQ13123 557 aaPredicted RBP4.29□□□□□ -1.72
RTN4-208ENST00000404909 PPP4R3BQ5MIZ7 849 aa4.29□□□□□ -1.72
RTN4-208ENST00000404909 SULF1Q8IWU6 871 aa4.29□□□□□ -1.72
RTN4-208ENST00000404909 PGAP2Q9UHJ9 254 aa4.29□□□□□ -1.72
RTN4-208ENST00000404909 CNTNAP5Q8WYK1 1306 aa4.29□□□□□ -1.72
RTN4-208ENST00000404909 STK36Q9NRP7 1315 aa4.29□□□□□ -1.72
RTN4-208ENST00000404909 COL2A1P02458 1487 aaPredicted RBP4.29□□□□□ -1.72
RTN4-208ENST00000404909 PALM3A6NDB9 673 aaPredicted RBP4.29□□□□□ -1.72
RTN4-208ENST00000404909 GLTPD2A6NH11 291 aa4.29□□□□□ -1.72
RTN4-208ENST00000404909 F5H6K3 240 aa4.29□□□□□ -1.72
RTN4-208ENST00000404909 CYTH3O43739 400 aa4.29□□□□□ -1.72
RTN4-208ENST00000404909 XBP1P17861 261 aa4.29□□□□□ -1.72
RTN4-208ENST00000404909 EPHX2P34913 555 aa4.29□□□□□ -1.72
RTN4-208ENST00000404909 KLRC3Q07444 240 aa4.29□□□□□ -1.72
RTN4-208ENST00000404909 SAFBQ15424 915 aaKnown RBP eCLIP4.29□□□□□ -1.721e-6■■□□□ 14.5
RTN4-208ENST00000404909 PKN1Q16512 942 aa4.29□□□□□ -1.72
RTN4-208ENST00000404909 SLFN13Q68D06 897 aa4.29□□□□□ -1.72
RTN4-208ENST00000404909 TTBK2Q6IQ55 1244 aa4.29□□□□□ -1.72
RTN4-208ENST00000404909 KRT26Q7Z3Y9 468 aa4.29□□□□□ -1.72
RTN4-208ENST00000404909 HEATR3Q7Z4Q2 680 aa4.29□□□□□ -1.72
RTN4-208ENST00000404909 SIAH1Q8IUQ4 282 aa4.29□□□□□ -1.72
RTN4-208ENST00000404909 ACER1Q8TDN7 264 aa4.29□□□□□ -1.72
RTN4-208ENST00000404909 GPKOWQ92917 476 aaPredicted RBP eCLIP4.29□□□□□ -1.72
RTN4-208ENST00000404909 MAP3K14Q99558 947 aa4.29□□□□□ -1.72
RTN4-208ENST00000404909 NUP88Q99567 741 aaPredicted RBP4.29□□□□□ -1.72
RTN4-208ENST00000404909 NYAP2Q9P242 653 aa4.29□□□□□ -1.72
RTN4-208ENST00000404909 MYH8P13535 1937 aa4.28□□□□□ -1.72
RTN4-208ENST00000404909 A0A1W2PRG0 241 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms